Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45206 * 109.46937 * 2 1 4 4 C 1.34225 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00422 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47263 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47013 * 55.00612 * 7 6 4 9 9 C 1.50703 * 109.47204 * 175.00191 * 7 6 4 10 10 H 1.07997 * 120.00066 * 240.00071 * 9 7 6 11 11 C 1.37881 * 119.99820 * 60.00284 * 9 7 6 12 12 N 1.31507 * 119.99805 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99668 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47196 * 90.00221 * 13 11 9 15 15 H 1.48503 * 109.46707 * 209.99798 * 13 11 9 16 16 H 1.48501 * 109.47318 * 329.99737 * 13 11 9 17 17 O 1.42899 * 109.47443 * 295.00444 * 7 6 4 18 18 C 1.35720 * 117.00198 * 155.93073 * 17 7 6 19 19 C 1.38679 * 120.09786 * 5.41201 * 18 17 7 20 20 C 1.38029 * 120.15432 * 180.02562 * 19 18 17 21 21 C 1.38980 * 120.34417 * 359.97361 * 20 19 18 22 22 O 1.35987 * 119.90048 * 180.02562 * 21 20 19 23 23 C 1.38205 * 120.19971 * 0.02562 * 21 20 19 24 24 C 1.39781 * 119.84192 * 359.76203 * 23 21 20 25 25 C 1.47413 * 120.17441 * 180.28248 * 24 23 21 26 26 O 1.21502 * 119.99934 * 180.20743 * 25 24 23 27 27 O 1.34756 * 119.99846 * 0.20229 * 25 24 23 28 28 C 1.45195 * 117.00040 * 180.02562 * 27 25 24 29 29 H 1.08995 * 109.47724 * 300.00053 * 1 2 3 30 30 H 1.09004 * 109.47103 * 60.00620 * 1 2 3 31 31 H 1.09006 * 109.46939 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47724 * 239.99947 * 2 1 3 33 33 H 1.09004 * 109.47103 * 119.99379 * 2 1 3 34 34 H 1.09003 * 109.47419 * 300.00419 * 6 4 3 35 35 H 1.09000 * 109.46814 * 60.00261 * 6 4 3 36 36 H 0.97001 * 119.99917 * 179.97438 * 12 11 9 37 37 H 1.07998 * 119.92390 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.82826 * 180.02562 * 20 19 18 39 39 H 0.96701 * 113.99886 * 90.00088 * 22 21 20 40 40 H 1.07993 * 120.08277 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.46851 * 60.00563 * 28 27 25 42 42 H 1.09003 * 109.46757 * 180.02562 * 28 27 25 43 43 H 1.09005 * 109.46997 * 300.00428 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9375 0.0000 7 6 5.4484 2.8575 0.0014 8 1 5.7812 2.2493 -0.8397 9 6 6.0242 4.2447 -0.1229 10 1 6.6597 4.4925 -0.9602 11 6 5.7397 5.1973 0.8324 12 7 4.9655 4.8956 1.8517 13 14 6.4529 6.9169 0.6778 14 1 5.5184 7.7726 -0.0966 15 1 6.6474 7.4956 2.0316 16 1 7.7597 6.8496 -0.0242 17 8 5.8933 2.2649 1.2232 18 6 7.1099 1.6635 1.2092 19 6 7.9102 1.7394 0.0792 20 6 9.1475 1.1278 0.0635 21 6 9.6012 0.4325 1.1780 22 8 10.8220 -0.1663 1.1529 23 6 8.8155 0.3477 2.3118 24 6 7.5631 0.9678 2.3382 25 6 6.7217 0.8873 3.5459 26 8 5.6319 1.4243 3.5639 27 8 7.1611 0.2180 4.6298 28 6 6.2796 0.1795 5.7829 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5850 3.4692 -0.8904 35 1 3.5842 3.4701 0.8895 36 1 4.7656 5.5657 2.5239 37 1 7.5646 2.2783 -0.7906 38 1 9.7666 1.1906 -0.8192 39 1 11.5443 0.4003 1.4568 40 1 9.1698 -0.1935 3.1767 41 1 5.3394 -0.2973 5.5057 42 1 6.7533 -0.3888 6.5834 43 1 6.0846 1.1958 6.1253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225966172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = -223.260454 kcal Electronic energy + Delta-G solvation = -30591.210835 eV Core-core repulsion = 26181.919815 eV Total energy + Delta-G solvation = -4409.291020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12717 -39.71846 -38.93289 -37.78377 -36.08463 -35.62680 -35.20132 -33.15643 -31.57341 -31.10070 -30.33242 -28.10213 -27.28983 -26.36768 -23.60074 -23.36349 -22.51082 -21.22770 -20.53848 -19.73708 -18.13049 -17.70233 -17.06423 -16.80123 -16.22827 -16.05542 -15.83808 -15.69419 -15.52269 -15.13011 -14.73530 -14.56995 -14.05196 -13.79922 -13.61896 -13.16161 -12.96165 -12.84933 -12.69550 -12.44863 -12.23094 -12.06576 -11.79535 -11.63077 -11.50348 -11.27902 -11.21424 -11.06122 -10.99428 -10.80123 -10.50196 -10.34341 -10.28411 -10.10810 -9.76748 -9.68190 -9.36053 -9.18836 -8.78111 -8.60434 -7.21816 -6.24520 -4.48639 1.31049 1.94439 3.04934 3.15780 3.21144 3.22664 3.25332 3.26944 3.35049 4.20219 4.25837 4.33923 4.65092 5.08230 5.11239 5.17839 5.24962 5.35891 5.40357 5.41954 5.48136 5.50520 5.60195 5.79230 5.82142 5.92167 5.93599 6.07242 6.09551 6.27228 6.33761 6.35964 6.43825 6.67051 6.72860 6.87056 6.96229 7.02132 7.16357 7.30439 7.61594 7.80801 7.98965 8.41071 8.50582 8.55154 8.76430 9.29324 10.75029 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.007178 B = 0.005463 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.734940 B = 5124.043956 C = 6700.629981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.458 3.542 5 O -0.515 6.515 6 C -0.099 4.099 7 C 0.216 3.784 8 H 0.035 0.965 9 C -0.569 4.569 10 H 0.070 0.930 11 C 0.086 3.914 12 N -0.844 5.844 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.271 1.271 17 O -0.247 6.247 18 C 0.242 3.758 19 C -0.200 4.200 20 C -0.070 4.070 21 C 0.013 3.987 22 O -0.498 6.498 23 C -0.052 4.052 24 C -0.180 4.180 25 C 0.502 3.498 26 O -0.466 6.466 27 O -0.369 6.369 28 C 0.041 3.959 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.269 0.731 37 H 0.147 0.853 38 H 0.126 0.874 39 H 0.376 0.624 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -6.993 0.725 7.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.303 3.697 5 O -0.403 6.403 6 C -0.137 4.137 7 C 0.162 3.838 8 H 0.053 0.947 9 C -0.605 4.605 10 H 0.088 0.912 11 C -0.123 4.123 12 N -0.477 5.477 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.155 6.155 18 C 0.189 3.811 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.031 4.031 22 O -0.306 6.306 23 C -0.071 4.071 24 C -0.182 4.182 25 C 0.345 3.655 26 O -0.351 6.351 27 O -0.288 6.288 28 C -0.054 4.054 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.230 0.770 40 H 0.154 0.846 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.020 -7.520 0.870 7.570 hybrid contribution 0.604 1.248 0.191 1.400 sum 0.624 -6.272 1.062 6.391 Atomic orbital electron populations 1.21774 0.93315 1.02298 1.03307 1.22845 0.94825 0.81799 1.02009 1.86564 1.26129 1.30968 1.84754 1.24834 0.79528 0.94253 0.71120 1.90589 1.60207 1.43648 1.45847 1.21789 0.96260 0.88307 1.07305 1.19976 0.89220 0.92807 0.81799 0.94727 1.21351 1.33596 0.94749 1.10845 0.91168 1.25077 0.93842 0.98994 0.94395 1.69900 1.33262 1.34247 1.10312 0.86543 0.79806 0.83739 0.77729 1.20181 1.20931 1.19551 1.86489 1.27072 1.63312 1.38583 1.19050 0.86409 0.84998 0.90630 1.21292 0.95421 1.05362 0.99831 1.21363 0.95996 0.93787 0.97750 1.17959 0.88045 1.02867 0.94238 1.84900 1.15082 1.41908 1.88680 1.21299 0.92456 0.95871 0.97430 1.18177 0.96977 1.10442 0.92585 1.20917 0.85599 0.76269 0.82687 1.90962 1.20690 1.41601 1.81879 1.86513 1.48627 1.69996 1.23637 1.23102 0.94106 1.02486 0.85667 0.91592 0.91729 0.90863 0.91914 0.91768 0.87871 0.84044 0.92122 0.83516 0.85604 0.77041 0.84607 0.92347 0.88799 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 37.15 0.38 -1.33 16 2 C 0.06 0.92 6.19 37.15 0.23 1.15 16 3 O -0.37 -7.01 10.22 -39.25 -0.40 -7.41 16 4 C 0.46 10.02 7.84 36.01 0.28 10.30 16 5 O -0.52 -12.31 15.17 -24.05 -0.36 -12.67 16 6 C -0.10 -2.23 5.22 -27.88 -0.15 -2.38 16 7 C 0.22 5.18 1.35 -27.88 -0.04 5.14 16 8 H 0.03 0.80 6.18 -51.93 -0.32 0.48 16 9 C -0.57 -14.08 7.91 -34.44 -0.27 -14.35 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.09 2.18 5.24 -17.82 -0.09 2.08 16 12 N -0.84 -22.48 10.93 55.43 0.61 -21.87 16 13 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 O -0.25 -6.32 6.50 -47.44 -0.31 -6.63 16 18 C 0.24 5.60 6.60 -38.71 -0.26 5.34 16 19 C -0.20 -4.05 8.67 -39.50 -0.34 -4.39 16 20 C -0.07 -1.20 9.97 -39.38 -0.39 -1.60 16 21 C 0.01 0.22 6.69 -39.32 -0.26 -0.05 16 22 O -0.50 -7.00 13.50 -19.70 -0.27 -7.27 16 23 C -0.05 -0.92 9.55 -39.02 -0.37 -1.30 16 24 C -0.18 -3.84 5.88 -104.87 -0.62 -4.46 16 25 C 0.50 10.98 7.89 34.47 0.27 11.25 16 26 O -0.47 -11.81 14.94 -26.60 -0.40 -12.21 16 27 O -0.37 -6.64 9.82 -40.64 -0.40 -7.04 16 28 C 0.04 0.57 10.57 101.05 1.07 1.64 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 33 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.14 3.53 6.22 -51.93 -0.32 3.20 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.15 2.94 5.66 -52.49 -0.30 2.64 16 38 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.38 3.44 9.06 45.56 0.41 3.85 16 40 H 0.14 2.13 7.61 -52.49 -0.40 1.73 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -32.49 373.95 -6.17 -38.66 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.70 Total: 9.07 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.56 Total: 7.07 kcal Atomic # 7 Polarization: -22.48 SS G_CDS: 0.61 Total: -21.87 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -2.14 Total: -53.24 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.49 -6.17 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225966172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.597 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds