Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45206 * 109.46937 * 2 1 4 4 C 1.34225 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00422 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99951 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47263 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47013 * 55.00612 * 7 6 4 9 9 C 1.50703 * 109.47204 * 175.00191 * 7 6 4 10 10 H 1.07997 * 120.00066 * 240.00071 * 9 7 6 11 11 C 1.37881 * 119.99820 * 60.00284 * 9 7 6 12 12 N 1.31507 * 119.99805 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99668 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47196 * 90.00221 * 13 11 9 15 15 H 1.48503 * 109.46707 * 209.99798 * 13 11 9 16 16 H 1.48501 * 109.47318 * 329.99737 * 13 11 9 17 17 O 1.42899 * 109.47443 * 295.00444 * 7 6 4 18 18 C 1.35720 * 117.00198 * 155.93073 * 17 7 6 19 19 C 1.38679 * 120.09786 * 5.41201 * 18 17 7 20 20 C 1.38029 * 120.15432 * 180.02562 * 19 18 17 21 21 C 1.38980 * 120.34417 * 359.97361 * 20 19 18 22 22 O 1.35987 * 119.90048 * 180.02562 * 21 20 19 23 23 C 1.38205 * 120.19971 * 0.02562 * 21 20 19 24 24 C 1.39781 * 119.84192 * 359.76203 * 23 21 20 25 25 C 1.47413 * 120.17441 * 180.28248 * 24 23 21 26 26 O 1.21502 * 119.99934 * 180.20743 * 25 24 23 27 27 O 1.34756 * 119.99846 * 0.20229 * 25 24 23 28 28 C 1.45195 * 117.00040 * 180.02562 * 27 25 24 29 29 H 1.08995 * 109.47724 * 300.00053 * 1 2 3 30 30 H 1.09004 * 109.47103 * 60.00620 * 1 2 3 31 31 H 1.09006 * 109.46939 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47724 * 239.99947 * 2 1 3 33 33 H 1.09004 * 109.47103 * 119.99379 * 2 1 3 34 34 H 1.09003 * 109.47419 * 300.00419 * 6 4 3 35 35 H 1.09000 * 109.46814 * 60.00261 * 6 4 3 36 36 H 0.97001 * 119.99917 * 179.97438 * 12 11 9 37 37 H 1.07998 * 119.92390 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.82826 * 180.02562 * 20 19 18 39 39 H 0.96701 * 113.99886 * 90.00088 * 22 21 20 40 40 H 1.07993 * 120.08277 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.46851 * 60.00563 * 28 27 25 42 42 H 1.09003 * 109.46757 * 180.02562 * 28 27 25 43 43 H 1.09005 * 109.46997 * 300.00428 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9375 0.0000 7 6 5.4484 2.8575 0.0014 8 1 5.7812 2.2493 -0.8397 9 6 6.0242 4.2447 -0.1229 10 1 6.6597 4.4925 -0.9602 11 6 5.7397 5.1973 0.8324 12 7 4.9655 4.8956 1.8517 13 14 6.4529 6.9169 0.6778 14 1 5.5184 7.7726 -0.0966 15 1 6.6474 7.4956 2.0316 16 1 7.7597 6.8496 -0.0242 17 8 5.8933 2.2649 1.2232 18 6 7.1099 1.6635 1.2092 19 6 7.9102 1.7394 0.0792 20 6 9.1475 1.1278 0.0635 21 6 9.6012 0.4325 1.1780 22 8 10.8220 -0.1663 1.1529 23 6 8.8155 0.3477 2.3118 24 6 7.5631 0.9678 2.3382 25 6 6.7217 0.8873 3.5459 26 8 5.6319 1.4243 3.5639 27 8 7.1611 0.2180 4.6298 28 6 6.2796 0.1795 5.7829 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5850 3.4692 -0.8904 35 1 3.5842 3.4701 0.8895 36 1 4.7656 5.5657 2.5239 37 1 7.5646 2.2783 -0.7906 38 1 9.7666 1.1906 -0.8192 39 1 11.5443 0.4003 1.4568 40 1 9.1698 -0.1935 3.1767 41 1 5.3394 -0.2973 5.5057 42 1 6.7533 -0.3888 6.5834 43 1 6.0846 1.1958 6.1253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225966172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = -243.573823 kcal Electronic energy + Delta-G solvation = -30592.091689 eV Core-core repulsion = 26181.919815 eV Total energy + Delta-G solvation = -4410.171874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72071 -41.36169 -40.45160 -39.26738 -37.64911 -37.24563 -36.69041 -34.98039 -32.92858 -32.59195 -31.96014 -29.57701 -28.58401 -28.18235 -25.11877 -24.89406 -23.89020 -22.77229 -22.03744 -21.41569 -19.62175 -19.31694 -18.73492 -18.33710 -17.90372 -17.54504 -17.34218 -17.25651 -17.15176 -16.69351 -16.41466 -15.88521 -15.54215 -15.37438 -15.13506 -14.62275 -14.42983 -14.33665 -14.03909 -13.89246 -13.68782 -13.51880 -13.26208 -13.02287 -12.92175 -12.83672 -12.77272 -12.66283 -12.53032 -12.48562 -12.13938 -11.80225 -11.73955 -11.55427 -11.49870 -11.40475 -11.03890 -10.92210 -10.67940 -10.09093 -8.79430 -8.13840 -6.43927 -0.21065 0.48449 1.30942 1.42335 1.45111 1.53913 1.62100 1.78362 1.83052 2.38514 2.67144 2.77500 3.22889 3.34825 3.86761 3.91552 3.95615 3.97330 4.10823 4.24861 4.29725 4.30855 4.31329 4.35276 4.46016 4.53154 4.60048 4.67265 4.84845 4.88723 4.89798 4.94128 5.06383 5.11138 5.26012 5.32689 5.39454 5.47486 5.53013 5.68858 5.75316 5.93776 6.54762 6.85656 6.89309 6.94309 7.03321 7.37659 8.84386 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.007178 B = 0.005463 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.734940 B = 5124.043956 C = 6700.629981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.368 6.368 4 C 0.463 3.537 5 O -0.539 6.539 6 C -0.097 4.097 7 C 0.215 3.785 8 H 0.033 0.967 9 C -0.573 4.573 10 H 0.074 0.926 11 C 0.044 3.956 12 N -0.875 5.875 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.291 1.291 16 H -0.266 1.266 17 O -0.275 6.275 18 C 0.199 3.801 19 C -0.212 4.212 20 C -0.059 4.059 21 C 0.036 3.964 22 O -0.495 6.495 23 C -0.047 4.047 24 C -0.203 4.203 25 C 0.500 3.500 26 O -0.515 6.515 27 O -0.361 6.361 28 C 0.033 3.967 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.264 0.736 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.405 0.595 40 H 0.160 0.840 41 H 0.053 0.947 42 H 0.143 0.857 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -7.985 0.345 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.285 6.285 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.134 4.134 7 C 0.161 3.839 8 H 0.051 0.949 9 C -0.609 4.609 10 H 0.092 0.908 11 C -0.162 4.162 12 N -0.510 5.510 13 Si 0.780 3.220 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.190 1.190 17 O -0.184 6.184 18 C 0.148 3.852 19 C -0.231 4.231 20 C -0.077 4.077 21 C -0.009 4.009 22 O -0.306 6.306 23 C -0.065 4.065 24 C -0.205 4.205 25 C 0.346 3.654 26 O -0.404 6.404 27 O -0.279 6.279 28 C -0.060 4.060 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.263 0.737 40 H 0.177 0.823 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.725 -8.525 0.493 8.712 hybrid contribution 0.206 1.361 0.355 1.422 sum 1.932 -7.164 0.848 7.468 Atomic orbital electron populations 1.21803 0.89766 1.04478 1.03709 1.23261 0.97567 0.79761 1.01854 1.86540 1.24396 1.33476 1.84092 1.24608 0.80339 0.93630 0.70597 1.90564 1.61023 1.44242 1.47109 1.21668 0.96005 0.88856 1.06878 1.19956 0.89777 0.92433 0.81753 0.94937 1.21573 1.33329 0.95296 1.10743 0.90808 1.25754 0.94149 1.02218 0.94078 1.70067 1.34819 1.34999 1.11102 0.85618 0.79402 0.79824 0.77203 1.19127 1.21737 1.18983 1.86438 1.28670 1.64564 1.38771 1.19541 0.86503 0.86670 0.92485 1.21311 0.96518 1.06417 0.98879 1.21689 0.94806 0.92107 0.99110 1.17934 0.88872 1.00841 0.93247 1.84840 1.14647 1.42411 1.88736 1.21521 0.91041 0.95153 0.98792 1.18437 0.98402 1.11475 0.92177 1.21199 0.84980 0.75553 0.83629 1.90934 1.22714 1.43857 1.82863 1.86492 1.49003 1.68755 1.23623 1.23485 0.94320 1.02961 0.85259 0.91728 0.90770 0.87731 0.91216 0.92880 0.86080 0.86512 0.92648 0.84163 0.82140 0.73743 0.82272 0.92792 0.83911 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.29 71.98 0.74 -2.25 16 2 C 0.05 1.52 6.19 71.98 0.45 1.96 16 3 O -0.37 -14.42 10.22 -51.37 -0.53 -14.95 16 4 C 0.46 21.11 7.84 71.24 0.56 21.67 16 5 O -0.54 -26.88 15.17 27.03 0.41 -26.47 16 6 C -0.10 -4.56 5.22 29.85 0.16 -4.41 16 7 C 0.21 10.77 1.35 29.85 0.04 10.81 16 8 H 0.03 1.59 6.18 -2.39 -0.01 1.57 16 9 C -0.57 -29.09 7.91 25.60 0.20 -28.89 16 10 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 11 C 0.04 2.26 5.24 84.66 0.44 2.70 16 12 N -0.88 -48.67 10.93 21.45 0.23 -48.44 16 13 Si 0.95 40.97 29.54 68.60 2.03 42.99 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 O -0.28 -14.80 6.50 -63.09 -0.41 -15.21 16 18 C 0.20 9.50 6.60 22.84 0.15 9.65 16 19 C -0.21 -8.62 8.67 22.33 0.19 -8.42 16 20 C -0.06 -1.88 9.97 22.40 0.22 -1.65 16 21 C 0.04 1.08 6.69 22.44 0.15 1.23 16 22 O -0.49 -11.66 13.50 -93.41 -1.26 -12.92 16 23 C -0.05 -1.58 9.55 22.64 0.22 -1.36 16 24 C -0.20 -8.79 5.88 -20.03 -0.12 -8.90 16 25 C 0.50 22.56 7.89 70.24 0.55 23.12 16 26 O -0.51 -27.54 14.94 26.84 0.40 -27.14 16 27 O -0.36 -12.84 9.82 -56.66 -0.56 -13.40 16 28 C 0.03 0.90 10.57 113.37 1.20 2.10 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 2.04 8.13 -2.39 -0.02 2.03 16 33 H 0.05 1.75 8.13 -2.38 -0.02 1.73 16 34 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 35 H 0.12 6.19 6.22 -2.39 -0.01 6.17 16 36 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.14 5.75 5.66 -2.91 -0.02 5.73 16 38 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.41 5.33 9.06 -74.06 -0.67 4.66 16 40 H 0.16 4.54 7.61 -2.91 -0.02 4.52 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -74.35 373.95 5.86 -68.49 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.39 Total: 29.69 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 5.16 Total: 17.35 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.23 Total: -48.44 kcal Atomic # 8 Polarization: -108.14 SS G_CDS: -1.94 Total: -110.08 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -74.35 5.86 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225966172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.087 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds