Wall clock time and date at job start Tue Mar 31 2020 20:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47294 * 2 1 4 4 C 1.34220 * 117.00136 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00151 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00326 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47250 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47017 * 55.00660 * 7 6 4 9 9 C 1.50699 * 109.46752 * 175.00077 * 7 6 4 10 10 H 1.08001 * 120.00328 * 240.00236 * 9 7 6 11 11 C 1.37883 * 120.00139 * 60.00591 * 9 7 6 12 12 N 1.31525 * 119.99736 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00493 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46837 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47153 * 119.99625 * 13 11 9 16 16 H 1.48500 * 109.47188 * 239.99915 * 13 11 9 17 17 O 1.42894 * 109.47231 * 295.00278 * 7 6 4 18 18 C 1.36108 * 116.99962 * 150.00179 * 17 7 6 19 19 C 1.39100 * 120.06783 * 270.28016 * 18 17 7 20 20 O 1.35761 * 119.85193 * 0.02562 * 19 18 17 21 21 C 1.39136 * 120.29620 * 180.25492 * 19 18 17 22 22 C 1.36505 * 120.44789 * 359.48155 * 21 19 18 23 23 C 1.40161 * 120.13394 * 0.23789 * 22 21 19 24 24 C 1.46511 * 120.15332 * 180.02562 * 23 22 21 25 25 C 1.50704 * 119.99539 * 354.59060 * 24 23 22 26 26 O 1.21335 * 120.00005 * 174.59503 * 24 23 22 27 27 C 1.38749 * 120.07223 * 89.99576 * 18 17 7 28 28 O 1.35715 * 120.21903 * 0.02612 * 27 18 17 29 29 H 1.08995 * 109.47694 * 299.99882 * 1 2 3 30 30 H 1.09003 * 109.47285 * 59.99960 * 1 2 3 31 31 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47057 * 239.99752 * 2 1 3 33 33 H 1.09003 * 109.47285 * 120.00040 * 2 1 3 34 34 H 1.09002 * 109.46788 * 60.00435 * 6 4 3 35 35 H 1.09000 * 109.46992 * 300.01166 * 6 4 3 36 36 H 0.96988 * 119.99810 * 179.97438 * 12 11 9 37 37 H 0.96702 * 114.00258 * 270.24056 * 20 19 18 38 38 H 1.07996 * 119.77451 * 179.76041 * 21 19 18 39 39 H 1.07999 * 119.93241 * 180.25125 * 22 21 19 40 40 H 1.09000 * 109.47035 * 5.05327 * 25 24 23 41 41 H 1.08997 * 109.47050 * 125.05387 * 25 24 23 42 42 H 1.08999 * 109.46877 * 245.05318 * 25 24 23 43 43 H 0.96699 * 114.00308 * 269.97997 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7806 2.2493 -0.8414 9 6 6.0243 4.2444 -0.1242 10 1 6.6591 4.4925 -0.9620 11 6 5.7407 5.1968 0.8316 12 7 4.9673 4.8948 1.8516 13 14 6.4548 6.9160 0.6779 14 1 7.2862 6.9987 -0.5498 15 1 5.3504 7.9053 0.5959 16 1 7.2961 7.2106 1.8657 17 8 5.8944 2.2642 1.2214 18 6 7.0550 1.5546 1.1761 19 6 7.0292 0.1939 0.8888 20 8 5.8439 -0.4247 0.6531 21 6 8.2123 -0.5371 0.8466 22 6 9.4114 0.0736 1.0758 23 6 9.4593 1.4450 1.3613 24 6 10.7461 2.1011 1.6069 25 6 12.0090 1.2815 1.6738 26 8 10.7949 3.3042 1.7565 27 6 8.2669 2.1883 1.4107 28 8 8.3010 3.5167 1.6866 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5851 3.4691 -0.8904 36 1 4.7681 5.5646 2.5242 37 1 5.4216 -0.7811 1.4466 38 1 8.1822 -1.5940 0.6265 39 1 10.3250 -0.5010 1.0370 40 1 11.7822 0.2439 1.4288 41 1 12.7344 1.6730 0.9606 42 1 12.4239 1.3349 2.6803 43 1 8.3855 4.0788 0.9043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226478962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:32 Heat of formation + Delta-G solvation = -209.259643 kcal Electronic energy + Delta-G solvation = -31027.032765 eV Core-core repulsion = 26618.348866 eV Total energy + Delta-G solvation = -4408.683899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07183 -39.55325 -38.48431 -36.89618 -36.45630 -35.53902 -35.03472 -33.12602 -31.50704 -30.87037 -30.19246 -28.71151 -27.88731 -26.15513 -23.30031 -23.02293 -22.08384 -21.48134 -19.88347 -19.45009 -18.25640 -17.18090 -16.80888 -16.65837 -16.27301 -16.00958 -15.97404 -15.45098 -15.14207 -14.69508 -14.53061 -14.26555 -14.20496 -13.77463 -13.69795 -13.17894 -13.00129 -12.76716 -12.62898 -12.36405 -12.21454 -12.02009 -11.86238 -11.69535 -11.42311 -11.23587 -11.05124 -11.02689 -10.97768 -10.72956 -10.36250 -10.16713 -9.99850 -9.79335 -9.49060 -9.39245 -9.20293 -8.69520 -8.18470 -8.11118 -7.79595 -6.17108 -4.36254 0.98865 1.75628 2.72469 3.20828 3.23244 3.34298 3.35689 3.45141 3.95715 4.29615 4.31709 4.63213 4.94982 5.06363 5.12934 5.14487 5.18565 5.20299 5.27088 5.44045 5.48046 5.56284 5.57164 5.71537 5.92599 5.94199 6.00500 6.10304 6.15752 6.25330 6.45404 6.50350 6.58955 6.62384 6.82166 6.91934 7.07489 7.19001 7.41284 7.70056 7.91624 8.01084 8.26287 8.48271 8.61509 8.77185 9.06773 9.41280 10.84718 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005209 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.452203 B = 5373.710552 C = 7845.834054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.372 6.372 4 C 0.440 3.560 5 O -0.479 6.479 6 C -0.099 4.099 7 C 0.242 3.758 8 H 0.018 0.982 9 C -0.570 4.570 10 H 0.063 0.937 11 C 0.099 3.901 12 N -0.844 5.844 13 Si 0.883 3.117 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.276 1.276 17 O -0.302 6.302 18 C 0.071 3.929 19 C 0.120 3.880 20 O -0.451 6.451 21 C -0.172 4.172 22 C -0.073 4.073 23 C -0.223 4.223 24 C 0.393 3.607 25 C -0.198 4.198 26 O -0.450 6.450 27 C 0.177 3.823 28 O -0.458 6.458 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.266 0.734 37 H 0.379 0.621 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -11.154 -1.773 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.291 6.291 4 C 0.283 3.717 5 O -0.364 6.364 6 C -0.137 4.137 7 C 0.189 3.811 8 H 0.036 0.964 9 C -0.607 4.607 10 H 0.081 0.919 11 C -0.110 4.110 12 N -0.477 5.477 13 Si 0.710 3.290 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.202 1.202 17 O -0.219 6.219 18 C 0.024 3.976 19 C 0.074 3.926 20 O -0.260 6.260 21 C -0.191 4.191 22 C -0.092 4.092 23 C -0.225 4.225 24 C 0.271 3.729 25 C -0.255 4.255 26 O -0.326 6.326 27 C 0.130 3.870 28 O -0.271 6.271 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.235 0.765 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.546 -10.740 -1.394 10.940 hybrid contribution 0.297 0.662 -0.137 0.738 sum 1.842 -10.078 -1.530 10.359 Atomic orbital electron populations 1.21777 0.93672 1.02138 1.03209 1.22760 0.94536 0.82126 1.01762 1.86578 1.26736 1.30632 1.85156 1.25014 0.79477 0.94784 0.72438 1.90742 1.59015 1.42742 1.43923 1.21792 0.96949 0.88391 1.06562 1.19601 0.88337 0.91676 0.81464 0.96412 1.21464 1.33728 0.95440 1.10056 0.91880 1.24927 0.93523 0.98304 0.94231 1.69845 1.33594 1.33975 1.10333 0.86689 0.79378 0.84275 0.78658 1.19528 1.20743 1.20196 1.86246 1.33468 1.66717 1.35504 1.19598 0.88536 0.90342 0.99096 1.19315 0.86696 0.90698 0.95897 1.84993 1.31703 1.74979 1.34345 1.20971 0.92035 1.00263 1.05806 1.20738 0.97683 0.92752 0.97992 1.20818 0.94441 0.95405 1.11854 1.22116 0.89509 0.88880 0.72410 1.22219 0.97324 1.01679 1.04323 1.90580 1.88860 1.16661 1.36472 1.19114 0.89897 0.85990 0.92029 1.84650 1.95198 1.11813 1.35394 0.91724 0.91839 0.91023 0.92063 0.91984 0.84685 0.88760 0.92422 0.76542 0.85543 0.85182 0.90046 0.89430 0.89226 0.74350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.80 10.22 -39.23 -0.40 -7.20 16 4 C 0.44 9.09 7.84 36.01 0.28 9.37 16 5 O -0.48 -10.22 10.84 -29.00 -0.31 -10.54 16 6 C -0.10 -2.22 5.22 -27.88 -0.15 -2.37 16 7 C 0.24 5.88 1.88 -27.88 -0.05 5.83 16 8 H 0.02 0.45 7.72 -51.93 -0.40 0.04 16 9 C -0.57 -14.33 7.04 -34.44 -0.24 -14.57 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.10 2.52 5.05 -17.81 -0.09 2.43 16 12 N -0.84 -22.34 10.93 55.43 0.61 -21.73 16 13 Si 0.88 20.07 29.54 -169.99 -5.02 15.05 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 O -0.30 -7.52 7.94 -50.44 -0.40 -7.92 16 18 C 0.07 1.58 5.57 -39.07 -0.22 1.36 16 19 C 0.12 2.29 6.72 -38.93 -0.26 2.03 16 20 O -0.45 -8.40 9.02 -49.29 -0.44 -8.85 16 21 C -0.17 -2.64 9.90 -39.87 -0.39 -3.04 16 22 C -0.07 -1.05 9.38 -39.49 -0.37 -1.42 16 23 C -0.22 -3.96 5.88 -104.95 -0.62 -4.58 16 24 C 0.39 6.49 7.19 -30.97 -0.22 6.27 16 25 C -0.20 -2.15 10.19 36.01 0.37 -1.79 16 26 O -0.45 -9.17 15.92 -16.37 -0.26 -9.43 16 27 C 0.18 3.84 6.73 -38.50 -0.26 3.58 16 28 O -0.46 -10.93 10.52 -47.46 -0.50 -11.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.14 3.31 6.22 -51.93 -0.32 2.98 16 35 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.38 5.83 8.99 45.56 0.41 6.24 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 1.33 5.92 -52.49 -0.31 1.02 16 40 H 0.08 0.69 5.60 -51.93 -0.29 0.40 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.40 9.09 7.85 45.56 0.36 9.45 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -31.58 362.93 -6.79 -38.36 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -3.91 Total: 15.23 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.61 Total: 2.99 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.61 Total: -21.73 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -2.32 Total: -55.36 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.58 -6.79 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226478962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.898 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds