Wall clock time and date at job start Tue Mar 31 2020 20:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47294 * 2 1 4 4 C 1.34220 * 117.00136 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00151 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00326 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47250 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47017 * 55.00660 * 7 6 4 9 9 C 1.50699 * 109.46752 * 175.00077 * 7 6 4 10 10 H 1.08001 * 120.00328 * 240.00236 * 9 7 6 11 11 C 1.37883 * 120.00139 * 60.00591 * 9 7 6 12 12 N 1.31525 * 119.99736 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00493 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46837 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47153 * 119.99625 * 13 11 9 16 16 H 1.48500 * 109.47188 * 239.99915 * 13 11 9 17 17 O 1.42894 * 109.47231 * 295.00278 * 7 6 4 18 18 C 1.36108 * 116.99962 * 150.00179 * 17 7 6 19 19 C 1.39100 * 120.06783 * 270.28016 * 18 17 7 20 20 O 1.35761 * 119.85193 * 0.02562 * 19 18 17 21 21 C 1.39136 * 120.29620 * 180.25492 * 19 18 17 22 22 C 1.36505 * 120.44789 * 359.48155 * 21 19 18 23 23 C 1.40161 * 120.13394 * 0.23789 * 22 21 19 24 24 C 1.46511 * 120.15332 * 180.02562 * 23 22 21 25 25 C 1.50704 * 119.99539 * 354.59060 * 24 23 22 26 26 O 1.21335 * 120.00005 * 174.59503 * 24 23 22 27 27 C 1.38749 * 120.07223 * 89.99576 * 18 17 7 28 28 O 1.35715 * 120.21903 * 0.02612 * 27 18 17 29 29 H 1.08995 * 109.47694 * 299.99882 * 1 2 3 30 30 H 1.09003 * 109.47285 * 59.99960 * 1 2 3 31 31 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47057 * 239.99752 * 2 1 3 33 33 H 1.09003 * 109.47285 * 120.00040 * 2 1 3 34 34 H 1.09002 * 109.46788 * 60.00435 * 6 4 3 35 35 H 1.09000 * 109.46992 * 300.01166 * 6 4 3 36 36 H 0.96988 * 119.99810 * 179.97438 * 12 11 9 37 37 H 0.96702 * 114.00258 * 270.24056 * 20 19 18 38 38 H 1.07996 * 119.77451 * 179.76041 * 21 19 18 39 39 H 1.07999 * 119.93241 * 180.25125 * 22 21 19 40 40 H 1.09000 * 109.47035 * 5.05327 * 25 24 23 41 41 H 1.08997 * 109.47050 * 125.05387 * 25 24 23 42 42 H 1.08999 * 109.46877 * 245.05318 * 25 24 23 43 43 H 0.96699 * 114.00308 * 269.97997 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7806 2.2493 -0.8414 9 6 6.0243 4.2444 -0.1242 10 1 6.6591 4.4925 -0.9620 11 6 5.7407 5.1968 0.8316 12 7 4.9673 4.8948 1.8516 13 14 6.4548 6.9160 0.6779 14 1 7.2862 6.9987 -0.5498 15 1 5.3504 7.9053 0.5959 16 1 7.2961 7.2106 1.8657 17 8 5.8944 2.2642 1.2214 18 6 7.0550 1.5546 1.1761 19 6 7.0292 0.1939 0.8888 20 8 5.8439 -0.4247 0.6531 21 6 8.2123 -0.5371 0.8466 22 6 9.4114 0.0736 1.0758 23 6 9.4593 1.4450 1.3613 24 6 10.7461 2.1011 1.6069 25 6 12.0090 1.2815 1.6738 26 8 10.7949 3.3042 1.7565 27 6 8.2669 2.1883 1.4107 28 8 8.3010 3.5167 1.6866 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5851 3.4691 -0.8904 36 1 4.7681 5.5646 2.5242 37 1 5.4216 -0.7811 1.4466 38 1 8.1822 -1.5940 0.6265 39 1 10.3250 -0.5010 1.0370 40 1 11.7822 0.2439 1.4288 41 1 12.7344 1.6730 0.9606 42 1 12.4239 1.3349 2.6803 43 1 8.3855 4.0788 0.9043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226478962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:32 Heat of formation + Delta-G solvation = -229.776044 kcal Electronic energy + Delta-G solvation = -31027.922423 eV Core-core repulsion = 26618.348866 eV Total energy + Delta-G solvation = -4409.573557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54977 -41.09204 -39.91244 -38.48149 -38.05660 -37.09729 -36.52544 -35.00608 -32.78772 -32.18776 -31.71953 -30.13921 -29.16990 -28.02982 -24.74574 -24.37391 -23.50708 -22.99688 -21.45772 -20.90202 -19.77378 -18.89636 -18.40705 -18.21873 -17.82734 -17.50194 -17.38719 -17.04632 -16.68450 -16.34115 -15.96713 -15.71207 -15.51441 -15.30110 -15.05942 -14.73446 -14.64091 -14.10947 -13.93599 -13.71522 -13.48023 -13.23605 -12.99909 -12.93717 -12.88796 -12.85986 -12.77948 -12.49803 -12.43679 -12.34252 -12.14448 -11.72891 -11.45339 -11.37390 -11.23631 -11.06916 -10.66108 -10.61170 -9.91984 -9.53051 -9.33347 -8.13595 -6.36850 -0.39425 0.32721 1.36923 1.42090 1.45173 1.50519 1.56363 1.99844 2.38805 2.57092 3.03870 3.13561 3.30052 3.51715 3.65145 3.99744 4.08829 4.09839 4.23084 4.23814 4.36031 4.42975 4.49795 4.63295 4.65484 4.70693 4.74752 4.85489 4.95455 4.97441 5.04198 5.15012 5.20130 5.20678 5.37295 5.46277 5.48742 5.62799 5.73121 5.77693 6.08364 6.56878 6.67997 6.80544 6.93290 7.15898 7.28657 7.48565 8.87939 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005209 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.452203 B = 5373.710552 C = 7845.834054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.377 6.377 4 C 0.444 3.556 5 O -0.486 6.486 6 C -0.096 4.096 7 C 0.248 3.752 8 H -0.002 1.002 9 C -0.576 4.576 10 H 0.055 0.945 11 C 0.069 3.931 12 N -0.870 5.870 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.290 1.290 17 O -0.323 6.323 18 C 0.023 3.977 19 C 0.117 3.883 20 O -0.462 6.462 21 C -0.158 4.158 22 C -0.043 4.043 23 C -0.231 4.231 24 C 0.388 3.612 25 C -0.186 4.186 26 O -0.501 6.501 27 C 0.135 3.865 28 O -0.480 6.480 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.263 0.737 37 H 0.391 0.609 38 H 0.169 0.831 39 H 0.190 0.810 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -14.281 -2.268 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.295 6.295 4 C 0.288 3.712 5 O -0.373 6.373 6 C -0.134 4.134 7 C 0.195 3.805 8 H 0.016 0.984 9 C -0.613 4.613 10 H 0.073 0.927 11 C -0.137 4.137 12 N -0.505 5.505 13 Si 0.761 3.239 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.217 1.217 17 O -0.241 6.241 18 C -0.023 4.023 19 C 0.070 3.930 20 O -0.272 6.272 21 C -0.177 4.177 22 C -0.061 4.061 23 C -0.233 4.233 24 C 0.270 3.730 25 C -0.242 4.242 26 O -0.380 6.380 27 C 0.089 3.911 28 O -0.292 6.292 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.248 0.752 38 H 0.187 0.813 39 H 0.207 0.793 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.946 -13.908 -1.892 14.342 hybrid contribution -0.112 1.418 0.001 1.422 sum 2.834 -12.490 -1.891 12.946 Atomic orbital electron populations 1.21804 0.90688 1.04216 1.03333 1.23159 0.96837 0.79916 1.02023 1.86539 1.24996 1.33381 1.84633 1.24486 0.80412 0.93830 0.72521 1.90725 1.59520 1.42709 1.44347 1.21569 0.96198 0.89822 1.05834 1.19438 0.89249 0.90778 0.81076 0.98402 1.21565 1.33539 0.96333 1.09836 0.92669 1.25379 0.93668 1.00751 0.93897 1.69961 1.34913 1.34615 1.10971 0.85881 0.78717 0.81275 0.77992 1.18956 1.19870 1.21657 1.86180 1.34940 1.67493 1.35470 1.20074 0.87997 0.91897 1.02354 1.19545 0.88172 0.89767 0.95498 1.84942 1.32186 1.74790 1.35303 1.21387 0.90584 1.01922 1.03772 1.21353 0.99611 0.91127 0.93963 1.21227 0.93848 0.96913 1.11317 1.22983 0.91005 0.88646 0.70409 1.22236 0.94031 1.02174 1.05787 1.90571 1.89560 1.19084 1.38783 1.19572 0.91577 0.85287 0.94710 1.84640 1.95560 1.13472 1.35486 0.91824 0.91500 0.87903 0.91700 0.91866 0.86838 0.88055 0.92753 0.75192 0.81348 0.79338 0.86690 0.87836 0.87687 0.75375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.05 1.49 6.19 71.98 0.45 1.94 16 3 O -0.38 -13.84 10.22 -51.32 -0.52 -14.36 16 4 C 0.44 18.88 7.84 71.24 0.56 19.44 16 5 O -0.49 -21.12 10.84 31.76 0.34 -20.78 16 6 C -0.10 -4.53 5.22 29.85 0.16 -4.38 16 7 C 0.25 12.73 1.88 29.85 0.06 12.78 16 8 H 0.00 -0.11 7.72 -2.39 -0.02 -0.13 16 9 C -0.58 -30.57 7.04 25.60 0.18 -30.39 16 10 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.07 3.69 5.05 84.65 0.43 4.11 16 12 N -0.87 -48.42 10.93 21.45 0.23 -48.19 16 13 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 17 O -0.32 -16.96 7.94 -65.76 -0.52 -17.48 16 18 C 0.02 1.05 5.57 22.60 0.13 1.17 16 19 C 0.12 4.35 6.72 22.69 0.15 4.50 16 20 O -0.46 -16.93 9.02 -61.90 -0.56 -17.49 16 21 C -0.16 -4.25 9.90 22.08 0.22 -4.03 16 22 C -0.04 -1.04 9.38 22.33 0.21 -0.83 16 23 C -0.23 -7.88 5.88 -20.08 -0.12 -8.00 16 24 C 0.39 12.24 7.19 27.85 0.20 12.44 16 25 C -0.19 -3.18 10.19 71.24 0.73 -2.46 16 26 O -0.50 -20.79 15.92 17.72 0.28 -20.51 16 27 C 0.14 6.07 6.73 22.97 0.15 6.22 16 28 O -0.48 -24.47 10.52 -63.02 -0.66 -25.13 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 33 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 34 H 0.11 5.88 6.22 -2.39 -0.01 5.87 16 35 H 0.10 4.45 8.14 -2.39 -0.02 4.43 16 36 H 0.26 14.15 8.31 -92.72 -0.77 13.38 16 37 H 0.39 11.84 8.99 -74.06 -0.67 11.17 16 38 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.19 2.37 5.92 -2.91 -0.02 2.35 16 40 H 0.11 1.14 5.60 -2.39 -0.01 1.13 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.39 19.44 7.85 -74.06 -0.58 18.86 16 Total: -1.00 -75.35 362.93 4.69 -70.66 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.16 Total: 37.73 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.23 Total: 10.45 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.23 Total: -48.19 kcal Atomic # 8 Polarization: -114.11 SS G_CDS: -1.64 Total: -115.76 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.35 4.69 -70.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226478962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.118 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds