Wall clock time and date at job start Tue Mar 31 2020 20:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 119.99918 * 2 1 4 4 C 1.52997 * 109.47170 * 269.99708 * 3 2 1 5 5 H 1.08993 * 112.95947 * 74.66896 * 4 3 2 6 6 C 1.53935 * 113.76336 * 206.31928 * 4 3 2 7 7 C 1.53931 * 86.34712 * 138.03385 * 6 4 3 8 8 N 1.47970 * 113.75896 * 303.02285 * 4 3 2 9 9 C 1.46896 * 110.99926 * 108.09711 * 8 4 3 10 10 C 1.50703 * 109.46969 * 170.00000 * 9 8 4 11 11 O 1.21293 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00170 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00091 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99926 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47158 * 60.00117 * 17 15 13 19 19 H 1.48506 * 109.47004 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46966 * 300.00215 * 17 15 13 21 21 C 1.34774 * 119.99801 * 179.97438 * 2 1 3 22 22 O 1.21629 * 120.00088 * 182.86109 * 21 2 1 23 23 C 1.47267 * 120.00241 * 2.86924 * 21 2 1 24 24 C 1.35201 * 123.14539 * 173.19321 * 23 21 2 25 25 S 1.70937 * 108.83077 * 179.97438 * 24 23 21 26 26 C 1.70774 * 91.12784 * 0.02562 * 25 24 23 27 27 N 1.28648 * 110.55757 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47481 * 264.02647 * 1 2 3 29 29 H 1.09000 * 109.47022 * 24.02695 * 1 2 3 30 30 H 1.09000 * 109.47496 * 144.02442 * 1 2 3 31 31 H 1.08994 * 109.47512 * 29.99772 * 3 2 1 32 32 H 1.09001 * 109.47088 * 149.99782 * 3 2 1 33 33 H 1.09003 * 113.73322 * 252.39730 * 6 4 3 34 34 H 1.09004 * 113.73469 * 23.67438 * 6 4 3 35 35 H 1.09004 * 113.75696 * 90.59233 * 7 6 4 36 36 H 1.08996 * 113.76284 * 221.96146 * 7 6 4 37 37 H 1.08995 * 109.47172 * 289.99966 * 9 8 4 38 38 H 1.08997 * 109.47302 * 50.00046 * 9 8 4 39 39 H 0.97001 * 120.00373 * 0.02562 * 12 10 9 40 40 H 0.96998 * 119.99762 * 180.02562 * 16 15 13 41 41 H 1.08005 * 125.58411 * 359.92511 * 24 23 21 42 42 H 1.07997 * 124.71919 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 1.5601 2.1003 -1.9318 6 6 3.6921 2.6082 -1.6063 7 6 3.9989 1.7856 -2.8708 8 7 3.1874 0.7120 -2.2505 9 6 2.3028 0.0805 -3.2387 10 6 3.1261 -0.7405 -4.1976 11 8 4.3310 -0.7946 -4.0698 12 7 2.5233 -1.4154 -5.1963 13 6 3.2721 -2.1627 -6.0683 14 1 4.3451 -2.2109 -5.9546 15 6 2.6507 -2.8582 -7.0983 16 7 1.3452 -2.7991 -7.2369 17 14 3.6710 -3.8770 -8.2860 18 1 4.4030 -4.9278 -7.5342 19 1 2.7769 -4.5147 -9.2856 20 1 4.6442 -2.9979 -8.9826 21 6 2.1388 -1.1672 0.0005 22 8 3.3540 -1.1679 0.0531 23 6 1.4039 -2.4418 -0.0627 24 6 2.0136 -3.6407 -0.2001 25 16 0.8217 -4.8655 -0.2311 26 6 -0.4214 -3.7072 -0.0598 27 7 0.0727 -2.5214 0.0103 28 1 -0.3634 -0.1069 1.0221 29 1 -0.3633 0.9386 -0.4184 30 1 -0.3634 -0.8316 -0.6037 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 3.4538 3.6523 -1.8092 34 1 4.4303 2.4859 -0.8136 35 1 3.5591 2.1967 -3.7795 36 1 5.0527 1.5312 -2.9843 37 1 1.5892 -0.5654 -2.7273 38 1 1.7648 0.8517 -3.7900 39 1 1.5596 -1.3725 -5.2983 40 1 0.9114 -3.2849 -7.9558 41 1 3.0792 -3.7985 -0.2783 42 1 -1.4755 -3.9380 -0.0163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231198488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:06 Heat of formation + Delta-G solvation = 11.177666 kcal Electronic energy + Delta-G solvation = -27979.057144 eV Core-core repulsion = 24087.270496 eV Total energy + Delta-G solvation = -3891.786647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80036 -41.05324 -39.72341 -39.16351 -36.44946 -35.97140 -33.37352 -32.12216 -31.60891 -30.14329 -27.55103 -27.46285 -26.75958 -25.31900 -24.62539 -22.64103 -21.15924 -20.51273 -20.34485 -19.95663 -19.34716 -17.86390 -17.48648 -17.29842 -17.04163 -16.80924 -16.50143 -16.19960 -16.08916 -15.63392 -15.55244 -15.03091 -14.74221 -14.41584 -14.31859 -14.07653 -13.85366 -13.68550 -13.56187 -13.35145 -13.01840 -12.88109 -12.76520 -12.63310 -12.49210 -12.29549 -12.15452 -11.87599 -11.65404 -11.52991 -11.07652 -10.72420 -10.50249 -10.38548 -10.06050 -9.97550 -9.72094 -9.33331 -8.50133 -5.99509 -0.43657 0.33046 0.67793 1.03988 1.35713 1.37234 1.48688 1.98946 2.07240 2.25734 2.41392 2.83051 3.14298 3.14965 3.27934 3.61636 3.81757 3.88945 4.13930 4.17998 4.21012 4.21885 4.30075 4.37447 4.43973 4.46761 4.51098 4.59573 4.74215 4.84367 4.91871 4.96372 4.97980 5.25536 5.29358 5.35715 5.48690 5.76447 5.89899 6.12723 6.32087 6.50478 6.55910 7.08214 7.24602 7.49181 8.06576 8.67293 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.004823 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.769952 B = 5804.553963 C = 8127.382772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.597 5.597 3 C 0.137 3.863 4 C 0.011 3.989 5 H 0.098 0.902 6 C -0.111 4.111 7 C 0.007 3.993 8 N -0.463 5.463 9 C 0.037 3.963 10 C 0.440 3.560 11 O -0.616 6.616 12 N -0.572 5.572 13 C -0.336 4.336 14 H 0.074 0.926 15 C -0.009 4.009 16 N -0.918 5.918 17 Si 0.992 3.008 18 H -0.273 1.273 19 H -0.265 1.265 20 H -0.272 1.272 21 C 0.582 3.418 22 O -0.556 6.556 23 C -0.014 4.014 24 C -0.255 4.255 25 S 0.272 5.728 26 C -0.004 4.004 27 N -0.448 5.448 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.394 0.606 40 H 0.279 0.721 41 H 0.168 0.832 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 3.882 16.490 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C 0.014 3.986 4 C -0.099 4.099 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.122 4.122 8 N -0.187 5.187 9 C -0.095 4.095 10 C 0.227 3.773 11 O -0.502 6.502 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.092 0.908 15 C -0.209 4.209 16 N -0.559 5.559 17 Si 0.815 3.185 18 H -0.199 1.199 19 H -0.189 1.189 20 H -0.198 1.198 21 C 0.368 3.632 22 O -0.434 6.434 23 C -0.149 4.149 24 C -0.398 4.398 25 S 0.528 5.472 26 C -0.302 4.302 27 N -0.163 5.163 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.227 0.773 40 H 0.089 0.911 41 H 0.186 0.814 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.963 2.588 16.753 19.663 hybrid contribution 0.317 0.640 -1.449 1.615 sum -9.646 3.228 15.304 18.376 Atomic orbital electron populations 1.22345 0.76840 1.04194 1.03174 1.47580 1.08422 1.04841 1.72008 1.21579 0.97842 0.84571 0.94618 1.24123 0.97471 0.92148 0.96167 0.88418 1.23241 0.96220 0.98913 0.96513 1.23708 0.99388 0.91862 0.97271 1.68559 1.14695 1.20416 1.14994 1.22158 0.95134 0.98397 0.93798 1.20706 0.88717 0.84213 0.83625 1.90491 1.16590 1.67788 1.75294 1.41900 1.09695 1.43185 1.26191 1.19584 0.92568 1.25944 1.08420 0.90823 1.26019 0.97144 0.98576 0.99176 1.69663 1.09147 1.43351 1.33741 0.85015 0.77833 0.78087 0.77531 1.19862 1.18879 1.19767 1.17384 0.85950 0.83342 0.76571 1.90816 1.14531 1.87194 1.50842 1.20553 0.89816 0.94862 1.09639 1.26767 1.07736 0.98008 1.07272 1.82643 0.93937 1.09421 1.61222 1.29374 1.07489 0.90608 1.02719 1.67332 1.08487 1.24341 1.16187 0.91869 0.89831 0.89079 0.85835 0.91338 0.87511 0.89177 0.91851 0.92428 0.90242 0.91213 0.77295 0.91147 0.81407 0.73599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 9.47 127.77 1.21 2.75 16 2 N -0.60 -16.28 2.83 -850.87 -2.41 -18.69 16 3 C 0.14 3.21 5.58 86.38 0.48 3.69 16 4 C 0.01 0.28 3.58 45.01 0.16 0.44 16 5 H 0.10 2.07 7.79 -2.39 -0.02 2.05 16 6 C -0.11 -2.62 7.84 31.24 0.25 -2.37 16 7 C 0.01 0.23 6.78 86.36 0.59 0.82 16 8 N -0.46 -17.44 4.80 -885.22 -4.25 -21.69 16 9 C 0.04 1.50 5.31 85.56 0.45 1.95 16 10 C 0.44 23.38 7.59 87.66 0.67 24.04 16 11 O -0.62 -37.87 15.14 -3.07 -0.05 -37.92 16 12 N -0.57 -31.59 5.29 -306.99 -1.62 -33.22 16 13 C -0.34 -20.07 9.68 84.04 0.81 -19.26 16 14 H 0.07 4.73 7.16 -2.91 -0.02 4.71 16 15 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 16 N -0.92 -50.46 13.05 21.66 0.28 -50.18 16 17 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.58 20.73 6.92 86.62 0.60 21.33 16 22 O -0.56 -24.61 15.90 -4.12 -0.07 -24.68 16 23 C -0.01 -0.43 6.49 40.56 0.26 -0.17 16 24 C -0.25 -7.70 10.62 67.12 0.71 -6.99 16 25 S 0.27 5.25 22.97 -56.49 -1.30 3.95 16 26 C 0.00 -0.06 12.17 130.71 1.59 1.53 16 27 N -0.45 -10.95 6.76 -193.03 -1.30 -12.25 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.24 8.03 -2.39 -0.02 1.22 16 30 H 0.09 2.12 5.27 -2.39 -0.01 2.10 16 31 H 0.12 1.78 8.07 -2.39 -0.02 1.77 16 32 H 0.07 1.94 7.11 -2.39 -0.02 1.92 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.17 7.92 -2.39 -0.02 2.15 16 35 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 36 H 0.06 2.35 8.10 -2.39 -0.02 2.34 16 37 H 0.08 3.20 7.91 -2.39 -0.02 3.18 16 38 H 0.07 2.47 7.69 -2.39 -0.02 2.45 16 39 H 0.39 20.66 7.90 -92.71 -0.73 19.93 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.17 5.59 8.04 -2.91 -0.02 5.57 16 42 H 0.25 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -83.91 366.56 -0.11 -84.01 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.33 Total: 36.80 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 8.25 Total: 27.73 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -9.31 Total: -136.03 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.11 Total: -62.60 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.30 Total: 3.95 kcal Total: -83.91 -0.11 -84.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231198488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.192 kcal (2) G-P(sol) polarization free energy of solvation -83.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds