Wall clock time and date at job start Tue Mar 31 2020 20:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00007 * 2 1 4 4 C 1.52998 * 109.47334 * 270.00455 * 3 2 1 5 5 H 1.08996 * 112.74926 * 75.76812 * 4 3 2 6 6 C 1.53519 * 113.47558 * 206.62062 * 4 3 2 7 7 C 1.53512 * 83.57531 * 140.78868 * 6 4 3 8 8 N 1.47480 * 113.47313 * 304.99565 * 4 3 2 9 9 C 1.46906 * 110.99692 * 106.53373 * 8 4 3 10 10 C 1.50701 * 109.47303 * 190.00145 * 9 8 4 11 11 O 1.21294 * 119.99592 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00027 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99997 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00127 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99982 * 179.97438 * 13 12 10 16 16 N 1.31404 * 120.00347 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47612 * 89.99414 * 17 15 13 19 19 H 1.48504 * 109.46741 * 209.99994 * 17 15 13 20 20 H 1.48506 * 109.47007 * 329.99118 * 17 15 13 21 21 C 1.34775 * 120.00063 * 180.02562 * 2 1 3 22 22 O 1.21577 * 120.00094 * 174.41705 * 21 2 1 23 23 C 1.47683 * 120.00020 * 354.69730 * 21 2 1 24 24 C 1.39490 * 122.10721 * 173.28898 * 23 21 2 25 25 C 1.34995 * 111.68517 * 179.97438 * 24 23 21 26 26 S 1.71761 * 105.45542 * 0.02562 * 25 24 23 27 27 N 1.30612 * 122.10209 * 353.00879 * 23 21 2 28 28 H 1.08996 * 109.46819 * 265.20700 * 1 2 3 29 29 H 1.08997 * 109.46930 * 25.20114 * 1 2 3 30 30 H 1.09001 * 109.47211 * 145.20395 * 1 2 3 31 31 H 1.08996 * 109.46824 * 30.00586 * 3 2 1 32 32 H 1.09006 * 109.46739 * 150.00067 * 3 2 1 33 33 H 1.08999 * 114.16928 * 254.43797 * 6 4 3 34 34 H 1.08999 * 114.16817 * 27.14361 * 6 4 3 35 35 H 1.08996 * 113.47590 * 219.21423 * 7 6 4 36 36 H 1.08996 * 113.53279 * 88.75100 * 7 6 4 37 37 H 1.08999 * 109.46791 * 309.99671 * 9 8 4 38 38 H 1.08998 * 109.47189 * 69.99860 * 9 8 4 39 39 H 0.96997 * 120.00176 * 359.97438 * 12 10 9 40 40 H 0.96998 * 120.00430 * 180.02562 * 16 15 13 41 41 H 1.07999 * 124.15221 * 359.96523 * 24 23 21 42 42 H 1.08003 * 127.27154 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5624 2.1176 -1.9221 6 6 3.6942 2.5995 -1.5994 7 6 3.8977 1.7910 -2.8884 8 7 3.1443 0.6926 -2.2550 9 6 2.2218 0.0668 -3.2118 10 6 2.8899 -1.1251 -3.8477 11 8 4.0232 -1.4235 -3.5348 12 7 2.2285 -1.8587 -4.7645 13 6 2.8364 -2.9427 -5.3433 14 1 3.8455 -3.2085 -5.0649 15 6 2.1543 -3.6994 -6.2882 16 7 0.9264 -3.3764 -6.6267 17 14 2.9825 -5.1768 -7.0763 18 1 2.7041 -6.3904 -6.2673 19 1 2.4533 -5.3659 -8.4509 20 1 4.4486 -4.9482 -7.1376 21 6 2.1389 -1.1672 -0.0005 22 8 3.3503 -1.1696 -0.1030 23 6 1.4052 -2.4435 0.1171 24 6 2.0400 -3.6785 -0.0158 25 6 1.1732 -4.7031 0.1302 26 16 -0.3542 -3.9728 0.4199 27 7 0.1222 -2.4869 0.3575 28 1 -0.3633 -0.0859 1.0240 29 1 -0.3633 0.9298 -0.4376 30 1 -0.3634 -0.8439 -0.5864 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1384 0.5139 33 1 3.4706 3.6535 -1.7643 34 1 4.4607 2.4330 -0.8426 35 1 4.9408 1.5443 -3.0862 36 1 3.3944 2.2196 -3.7550 37 1 1.3215 -0.2570 -2.6897 38 1 1.9545 0.7883 -3.9839 39 1 1.3223 -1.6198 -5.0149 40 1 0.4501 -3.9048 -7.2861 41 1 3.0951 -3.7999 -0.2116 42 1 1.3936 -5.7590 0.0762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235687545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:55 Heat of formation + Delta-G solvation = 42.406728 kcal Electronic energy + Delta-G solvation = -28275.458175 eV Core-core repulsion = 24385.025721 eV Total energy + Delta-G solvation = -3890.432453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63381 -39.77511 -37.93202 -37.52110 -35.28305 -33.78412 -31.56797 -31.22273 -30.53719 -28.95893 -26.86933 -25.72847 -25.56793 -23.61852 -23.25845 -21.09202 -19.50339 -19.22853 -19.08227 -18.32907 -17.79514 -16.98538 -16.07189 -15.96607 -15.74345 -15.41239 -14.87703 -14.58932 -14.31946 -14.13747 -13.68925 -13.57787 -13.39590 -13.17319 -13.01272 -12.65090 -12.57975 -12.45790 -12.27597 -11.60204 -11.50678 -11.40071 -11.18805 -11.14623 -10.97899 -10.76167 -10.68856 -10.38804 -10.34582 -10.13332 -9.71977 -9.49752 -9.40367 -8.74185 -8.66389 -8.26204 -8.00054 -7.85380 -6.33359 -3.73178 0.69386 1.55388 1.90847 2.02816 3.11999 3.21535 3.29066 3.35958 3.58991 4.03667 4.11368 4.31717 4.59844 4.68960 4.89568 4.98288 5.15759 5.19202 5.29016 5.32374 5.34936 5.44543 5.47855 5.57425 5.66822 5.71116 5.75673 5.79778 5.87186 5.95129 5.98126 6.02748 6.11473 6.32824 6.38559 6.42941 6.67903 6.83548 7.39402 7.56367 7.62702 8.15948 8.47994 8.73392 9.28569 9.65521 10.20208 10.85090 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008560 B = 0.005390 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.140360 B = 5193.356834 C = 7546.105130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.605 5.605 3 C 0.140 3.860 4 C 0.000 4.000 5 H 0.073 0.927 6 C -0.134 4.134 7 C 0.001 3.999 8 N -0.410 5.410 9 C 0.012 3.988 10 C 0.451 3.549 11 O -0.562 6.562 12 N -0.573 5.573 13 C -0.291 4.291 14 H 0.101 0.899 15 C 0.020 3.980 16 N -0.907 5.907 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.586 3.414 22 O -0.480 6.480 23 C 0.058 3.942 24 C -0.125 4.125 25 C -0.275 4.275 26 S 0.431 5.569 27 N -0.515 5.515 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.389 0.611 40 H 0.269 0.731 41 H 0.172 0.828 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 6.749 15.004 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.340 5.340 3 C 0.017 3.983 4 C -0.111 4.111 5 H 0.091 0.909 6 C -0.172 4.172 7 C -0.128 4.128 8 N -0.132 5.132 9 C -0.121 4.121 10 C 0.236 3.764 11 O -0.443 6.443 12 N -0.212 5.212 13 C -0.421 4.421 14 H 0.119 0.881 15 C -0.181 4.181 16 N -0.549 5.549 17 Si 0.754 3.246 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.368 3.632 22 O -0.350 6.350 23 C -0.117 4.117 24 C -0.157 4.157 25 C -0.424 4.424 26 S 0.586 5.414 27 N -0.350 5.350 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.079 0.921 41 H 0.190 0.810 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.763 6.136 15.719 18.179 hybrid contribution 0.885 -0.181 -1.730 1.952 sum -5.879 5.955 13.989 16.300 Atomic orbital electron populations 1.21948 0.79075 1.02295 1.02121 1.47445 1.06974 1.05342 1.74192 1.21439 0.97640 0.84014 0.95215 1.23909 0.96813 0.93818 0.96582 0.90948 1.23136 0.97525 0.97566 0.98981 1.23755 1.01799 0.91698 0.95534 1.68952 1.14542 1.16117 1.13605 1.22482 0.96360 0.97675 0.95561 1.19672 0.87804 0.85730 0.83202 1.90548 1.18630 1.71324 1.63823 1.41860 1.16052 1.26625 1.36629 1.19670 1.00253 1.03663 1.18528 0.88127 1.25198 0.95775 0.99474 0.97633 1.69612 1.10829 1.40757 1.33711 0.85911 0.79455 0.81137 0.78113 1.20530 1.21010 1.19478 1.17169 0.86559 0.81747 0.77735 1.90901 1.12462 1.85701 1.45928 1.21263 0.88359 0.96779 1.05259 1.21454 1.03634 0.89420 1.01237 1.27089 1.00757 1.05493 1.09072 1.80445 1.12196 0.92461 1.56302 1.72854 1.16701 1.21484 1.23956 0.92709 0.92183 0.89620 0.90473 0.89325 0.90959 0.88726 0.89508 0.91980 0.90436 0.92965 0.77879 0.92109 0.81050 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 9.19 59.85 0.55 1.61 16 2 N -0.60 -8.75 2.63 -182.75 -0.48 -9.23 16 3 C 0.14 1.75 5.53 -4.04 -0.02 1.73 16 4 C 0.00 0.00 3.35 -71.43 -0.24 -0.24 16 5 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 6 C -0.13 -1.58 8.00 -26.20 -0.21 -1.79 16 7 C 0.00 0.02 7.71 -7.54 -0.06 -0.04 16 8 N -0.41 -7.46 4.17 -237.93 -0.99 -8.46 16 9 C 0.01 0.23 5.30 -4.97 -0.03 0.20 16 10 C 0.45 11.53 7.85 -10.99 -0.09 11.44 16 11 O -0.56 -16.53 16.01 5.55 0.09 -16.44 16 12 N -0.57 -15.36 5.29 -10.96 -0.06 -15.42 16 13 C -0.29 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 15 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 16 N -0.91 -25.35 13.05 55.50 0.72 -24.62 16 17 Si 0.93 21.70 29.55 -169.99 -5.02 16.67 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.59 10.52 7.21 -12.40 -0.09 10.43 16 22 O -0.48 -10.31 15.43 5.30 0.08 -10.23 16 23 C 0.06 0.97 6.42 -84.06 -0.54 0.43 16 24 C -0.13 -2.02 9.98 -40.27 -0.40 -2.42 16 25 C -0.28 -3.50 11.41 29.58 0.34 -3.17 16 26 S 0.43 4.93 23.20 -107.50 -2.49 2.44 16 27 N -0.52 -7.31 7.52 24.86 0.19 -7.12 16 28 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 30 H 0.09 1.17 5.81 -51.93 -0.30 0.86 16 31 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.09 1.23 7.24 -51.93 -0.38 0.85 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.06 0.90 7.42 -51.93 -0.39 0.51 16 37 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 38 H 0.05 0.94 7.30 -51.93 -0.38 0.56 16 39 H 0.39 10.03 7.90 -40.82 -0.32 9.70 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.17 2.94 8.00 -52.49 -0.42 2.52 16 42 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -35.93 366.69 -8.92 -44.85 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.45 Total: 12.00 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -1.03 Total: 10.04 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.62 Total: -64.85 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.17 Total: -26.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.49 Total: 2.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.93 -8.92 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235687545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.254 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds