Wall clock time and date at job start Tue Mar 31 2020 20:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38906 * 119.99899 * 180.27618 * 4 2 1 6 6 N 1.29519 * 125.26443 * 179.72401 * 5 4 2 7 7 C 1.33637 * 115.66134 * 179.78881 * 6 5 4 8 8 C 1.47206 * 122.49957 * 180.21410 * 7 6 5 9 9 O 1.21639 * 119.99820 * 180.31238 * 8 7 6 10 10 N 1.34774 * 119.99686 * 0.31329 * 8 7 6 11 11 C 1.46498 * 119.99554 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47503 * 324.99248 * 11 10 8 13 13 C 1.53008 * 109.46954 * 204.99764 * 11 10 8 14 14 N 1.46498 * 109.47110 * 54.99586 * 13 11 10 15 15 C 1.36930 * 119.99874 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00139 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00125 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46913 * 89.99972 * 19 17 15 21 21 H 1.48501 * 109.46973 * 209.99734 * 19 17 15 22 22 H 1.48491 * 109.47089 * 330.00107 * 19 17 15 23 23 C 1.52999 * 109.47657 * 84.99498 * 11 10 8 24 24 C 1.53006 * 117.49537 * 8.74852 * 23 11 10 25 25 C 1.53002 * 117.50008 * 300.09029 * 23 11 10 26 26 C 1.34890 * 114.99705 * 0.50241 * 7 6 5 27 27 S 1.70978 * 109.19864 * 359.73662 * 26 7 6 28 28 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 119.99882 * 1 2 3 30 30 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 32 32 H 0.97001 * 120.00407 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.46864 * 174.99915 * 13 11 10 34 34 H 1.08997 * 109.46716 * 294.99868 * 13 11 10 35 35 H 0.97006 * 120.00065 * 0.02562 * 14 13 11 36 36 H 0.96991 * 120.00144 * 179.97438 * 18 17 15 37 37 H 1.09003 * 115.55412 * 154.40958 * 23 11 10 38 38 H 1.09001 * 117.49748 * 359.97438 * 24 23 11 39 39 H 1.08996 * 117.49855 * 145.01950 * 24 23 11 40 40 H 1.08999 * 117.49934 * 214.97865 * 25 23 11 41 41 H 1.09001 * 117.49356 * 359.97003 * 25 23 11 42 42 H 1.08006 * 125.39971 * 179.75185 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5699 -1.1672 0.0115 6 7 4.3177 -2.2246 0.0224 7 6 5.6353 -2.0017 0.0218 8 6 6.6223 -3.0939 0.0286 9 8 7.8116 -2.8388 0.0335 10 7 6.2080 -4.3764 0.0294 11 6 7.1903 -5.4633 0.0368 12 1 8.0614 -5.1699 -0.5491 13 6 6.5652 -6.7196 -0.5732 14 7 6.0477 -6.4089 -1.9081 15 6 5.4397 -7.3852 -2.6510 16 1 5.3420 -8.3845 -2.2532 17 6 4.9498 -7.0909 -3.9161 18 7 5.0703 -5.8734 -4.4016 19 14 4.1210 -8.4230 -4.9300 20 1 2.6647 -8.4319 -4.6397 21 1 4.3363 -8.1519 -6.3741 22 1 4.7032 -9.7440 -4.5822 23 6 7.6184 -5.7542 1.4765 24 6 6.8422 -5.0609 2.5981 25 6 8.2680 -4.6147 2.2643 26 6 5.9934 -0.7012 0.0207 27 16 4.5859 0.2695 0.0129 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.6959 -2.0073 0.0057 32 1 5.2596 -4.5798 0.0258 33 1 7.3212 -7.5012 -0.6494 34 1 5.7490 -7.0642 0.0617 35 1 6.1358 -5.5114 -2.2656 36 1 4.7283 -5.6678 -5.2857 37 1 7.9789 -6.7656 1.6646 38 1 6.0269 -4.3973 2.3102 39 1 6.6925 -5.6160 3.5241 40 1 9.0556 -4.8765 2.9709 41 1 8.3907 -3.6580 1.7566 42 1 7.0083 -0.3317 0.0239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269089033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:29 Heat of formation + Delta-G solvation = 21.501270 kcal Electronic energy + Delta-G solvation = -26849.991379 eV Core-core repulsion = 22958.652397 eV Total energy + Delta-G solvation = -3891.338982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75350 -40.21142 -38.84125 -36.93008 -35.16361 -34.84973 -33.19568 -31.21634 -30.99912 -29.37105 -28.26994 -25.38436 -23.99629 -22.77652 -22.18525 -21.68754 -21.42916 -19.94167 -19.54643 -18.67866 -17.37119 -17.19037 -17.05660 -16.33020 -16.21853 -15.87593 -15.54699 -14.83796 -14.65550 -14.52617 -14.12857 -13.75431 -13.33516 -13.27134 -13.19616 -13.09342 -12.86577 -12.70106 -12.17547 -11.97602 -11.58786 -11.33488 -11.26907 -11.10397 -10.86878 -10.81776 -10.49147 -10.21662 -10.10429 -10.00269 -9.77420 -9.69285 -9.52658 -9.44854 -8.89640 -8.62606 -8.35348 -6.93342 -5.75449 -3.05234 0.53072 0.91307 1.68037 1.69183 2.30894 2.38441 3.42379 3.47834 3.49833 3.53501 3.63350 4.11426 4.16384 4.40922 4.57897 4.76623 4.86430 4.96691 5.19527 5.23249 5.25705 5.30971 5.36905 5.51276 5.56678 5.63601 5.81082 5.89913 5.93914 6.06013 6.07694 6.28433 6.37820 6.50628 6.52909 6.56939 6.72886 6.97444 7.39034 7.43214 7.69651 7.95857 8.41781 8.53265 9.53610 10.10245 10.45704 11.46757 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.003995 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.622630 B = 7007.812588 C = 9415.837074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.512 3.488 3 O -0.513 6.513 4 N -0.620 5.620 5 C 0.249 3.751 6 N -0.467 5.467 7 C 0.036 3.964 8 C 0.594 3.406 9 O -0.539 6.539 10 N -0.688 5.688 11 C 0.166 3.834 12 H 0.092 0.908 13 C 0.149 3.851 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.187 4.187 26 C -0.263 4.263 27 S 0.263 5.737 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.428 0.572 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 12.283 14.198 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.388 6.388 4 N -0.271 5.271 5 C -0.120 4.120 6 N -0.190 5.190 7 C -0.098 4.098 8 C 0.377 3.623 9 O -0.417 6.417 10 N -0.337 5.337 11 C 0.061 3.939 12 H 0.110 0.890 13 C 0.021 3.979 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.224 4.224 26 C -0.406 4.406 27 S 0.515 5.485 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.268 0.732 32 H 0.250 0.750 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.355 13.578 14.132 20.603 hybrid contribution -0.540 -1.925 -0.830 2.165 sum -6.895 11.653 13.302 18.981 Atomic orbital electron populations 1.21892 0.88605 1.06654 1.05445 1.21334 0.91704 0.82096 0.74913 1.90684 1.69672 1.30698 1.47717 1.42866 1.01633 1.11626 1.71013 1.24283 0.89778 0.93596 1.04349 1.67042 1.03283 1.29262 1.19433 1.19892 0.88641 0.93681 1.07627 1.17065 0.86670 0.82150 0.76382 1.90724 1.15848 1.83860 1.51277 1.45804 1.11463 1.04450 1.72028 1.20818 0.92251 0.87219 0.93565 0.88973 1.20906 0.96233 0.92861 0.87949 1.42347 1.69994 1.11924 1.13314 1.19209 1.29648 0.91568 0.96763 0.91142 1.24742 1.01863 0.96550 0.97644 1.69681 1.51590 1.18475 1.18096 0.86197 0.79271 0.81055 0.79687 1.21804 1.21833 1.20753 1.22693 1.04930 0.97698 0.92599 1.22898 0.95650 1.04155 0.98816 1.23337 0.95083 1.00869 1.03112 1.26870 1.07589 0.97718 1.08406 1.84755 0.91316 1.05697 1.66762 0.87859 0.88206 0.88368 0.73244 0.74980 0.94744 0.95591 0.77965 0.93578 0.87189 0.88989 0.89543 0.89728 0.86611 0.79391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.32 36.01 0.37 -0.26 16 2 C 0.51 4.39 7.90 -10.98 -0.09 4.31 16 3 O -0.51 -6.10 14.59 5.55 0.08 -6.01 16 4 N -0.62 -5.90 5.40 -11.91 -0.06 -5.96 16 5 C 0.25 3.28 8.36 -87.53 -0.73 2.55 16 6 N -0.47 -7.20 10.11 -10.51 -0.11 -7.31 16 7 C 0.04 0.59 6.66 -84.63 -0.56 0.03 16 8 C 0.59 10.72 6.62 -12.62 -0.08 10.63 16 9 O -0.54 -10.55 13.68 5.24 0.07 -10.48 16 10 N -0.69 -12.14 3.05 -54.95 -0.17 -12.30 16 11 C 0.17 2.95 2.59 -67.93 -0.18 2.77 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 13 C 0.15 2.98 5.80 -4.04 -0.02 2.95 16 14 N -0.73 -18.50 5.43 -59.91 -0.33 -18.83 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.16 -2.38 5.71 -90.62 -0.52 -2.89 16 24 C -0.18 -2.46 9.74 -26.69 -0.26 -2.72 16 25 C -0.19 -2.72 9.82 -26.69 -0.26 -2.98 16 26 C -0.26 -3.70 10.55 29.54 0.31 -3.39 16 27 S 0.26 3.25 20.29 -107.50 -2.18 1.07 16 28 H 0.10 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.43 3.05 8.82 -40.82 -0.36 2.69 16 32 H 0.41 7.43 8.08 -40.82 -0.33 7.10 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 10.55 7.33 -40.82 -0.30 10.25 16 36 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.09 1.36 6.67 -51.93 -0.35 1.01 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.12 1.94 5.01 -51.93 -0.26 1.68 16 42 H 0.19 2.41 7.99 -52.48 -0.42 1.99 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -34.69 368.76 -9.04 -43.72 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -5.33 Total: 17.12 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.27 Total: 3.71 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: 0.06 Total: -72.00 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.15 Total: -16.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.18 Total: 1.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.69 -9.04 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269089033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.225 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds