Wall clock time and date at job start Tue Mar 31 2020 20:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38906 * 119.99899 * 180.27618 * 4 2 1 6 6 N 1.29519 * 125.26443 * 179.72401 * 5 4 2 7 7 C 1.33637 * 115.66134 * 179.78881 * 6 5 4 8 8 C 1.47206 * 122.49957 * 180.21410 * 7 6 5 9 9 O 1.21639 * 119.99820 * 180.31238 * 8 7 6 10 10 N 1.34774 * 119.99686 * 0.31329 * 8 7 6 11 11 C 1.46498 * 119.99554 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47503 * 324.99248 * 11 10 8 13 13 C 1.53008 * 109.46954 * 204.99764 * 11 10 8 14 14 N 1.46498 * 109.47110 * 54.99586 * 13 11 10 15 15 C 1.36930 * 119.99874 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00139 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00125 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46913 * 89.99972 * 19 17 15 21 21 H 1.48501 * 109.46973 * 209.99734 * 19 17 15 22 22 H 1.48491 * 109.47089 * 330.00107 * 19 17 15 23 23 C 1.52999 * 109.47657 * 84.99498 * 11 10 8 24 24 C 1.53006 * 117.49537 * 8.74852 * 23 11 10 25 25 C 1.53002 * 117.50008 * 300.09029 * 23 11 10 26 26 C 1.34890 * 114.99705 * 0.50241 * 7 6 5 27 27 S 1.70978 * 109.19864 * 359.73662 * 26 7 6 28 28 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46799 * 119.99882 * 1 2 3 30 30 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 32 32 H 0.97001 * 120.00407 * 359.97438 * 10 8 7 33 33 H 1.08997 * 109.46864 * 174.99915 * 13 11 10 34 34 H 1.08997 * 109.46716 * 294.99868 * 13 11 10 35 35 H 0.97006 * 120.00065 * 0.02562 * 14 13 11 36 36 H 0.96991 * 120.00144 * 179.97438 * 18 17 15 37 37 H 1.09003 * 115.55412 * 154.40958 * 23 11 10 38 38 H 1.09001 * 117.49748 * 359.97438 * 24 23 11 39 39 H 1.08996 * 117.49855 * 145.01950 * 24 23 11 40 40 H 1.08999 * 117.49934 * 214.97865 * 25 23 11 41 41 H 1.09001 * 117.49356 * 359.97003 * 25 23 11 42 42 H 1.08006 * 125.39971 * 179.75185 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5699 -1.1672 0.0115 6 7 4.3177 -2.2246 0.0224 7 6 5.6353 -2.0017 0.0218 8 6 6.6223 -3.0939 0.0286 9 8 7.8116 -2.8388 0.0335 10 7 6.2080 -4.3764 0.0294 11 6 7.1903 -5.4633 0.0368 12 1 8.0614 -5.1699 -0.5491 13 6 6.5652 -6.7196 -0.5732 14 7 6.0477 -6.4089 -1.9081 15 6 5.4397 -7.3852 -2.6510 16 1 5.3420 -8.3845 -2.2532 17 6 4.9498 -7.0909 -3.9161 18 7 5.0703 -5.8734 -4.4016 19 14 4.1210 -8.4230 -4.9300 20 1 2.6647 -8.4319 -4.6397 21 1 4.3363 -8.1519 -6.3741 22 1 4.7032 -9.7440 -4.5822 23 6 7.6184 -5.7542 1.4765 24 6 6.8422 -5.0609 2.5981 25 6 8.2680 -4.6147 2.2643 26 6 5.9934 -0.7012 0.0207 27 16 4.5859 0.2695 0.0129 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.6959 -2.0073 0.0057 32 1 5.2596 -4.5798 0.0258 33 1 7.3212 -7.5012 -0.6494 34 1 5.7490 -7.0642 0.0617 35 1 6.1358 -5.5114 -2.2656 36 1 4.7283 -5.6678 -5.2857 37 1 7.9789 -6.7656 1.6646 38 1 6.0269 -4.3973 2.3102 39 1 6.6925 -5.6160 3.5241 40 1 9.0556 -4.8765 2.9709 41 1 8.3907 -3.6580 1.7566 42 1 7.0083 -0.3317 0.0239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269089033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:28 Heat of formation + Delta-G solvation = -3.310899 kcal Electronic energy + Delta-G solvation = -26851.067316 eV Core-core repulsion = 22958.652397 eV Total energy + Delta-G solvation = -3892.414918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81624 -41.24839 -39.99304 -38.27050 -36.55421 -36.04328 -34.80723 -33.03576 -31.83538 -30.21718 -29.91884 -26.67263 -25.78544 -23.87641 -23.45107 -22.95092 -22.54837 -21.17379 -20.86092 -19.72356 -19.19845 -18.33483 -17.87769 -17.55769 -17.35996 -16.95407 -16.91063 -16.58151 -15.86273 -15.54835 -15.29698 -15.20188 -14.97654 -14.84731 -14.38391 -14.32203 -13.67869 -13.43860 -13.17496 -13.15827 -13.10651 -12.83764 -12.71267 -12.66635 -12.37037 -12.15680 -12.09174 -11.83658 -11.44961 -11.27461 -11.11809 -11.01484 -10.95787 -10.81363 -10.49375 -10.01861 -9.40775 -9.01431 -7.93205 -5.23549 -0.54177 -0.09005 0.61132 0.65763 1.47094 1.47880 1.49897 1.51429 1.58445 2.20227 2.33120 2.56208 2.94270 3.24129 3.41008 3.62223 3.69853 3.95059 4.06851 4.08923 4.17600 4.19117 4.39827 4.48828 4.50072 4.53644 4.62348 4.65114 4.81689 4.87236 4.92519 5.04485 5.12087 5.12863 5.25059 5.37567 5.49616 5.53306 5.75936 6.26197 6.35030 6.60710 6.69549 7.13411 7.33433 8.06431 8.30838 9.29933 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.003995 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.622630 B = 7007.812588 C = 9415.837074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.614 5.614 5 C 0.242 3.758 6 N -0.489 5.489 7 C 0.009 3.991 8 C 0.590 3.410 9 O -0.562 6.562 10 N -0.685 5.685 11 C 0.175 3.825 12 H 0.065 0.935 13 C 0.151 3.849 14 N -0.743 5.743 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.074 4.074 18 N -0.970 5.970 19 Si 0.975 3.025 20 H -0.284 1.284 21 H -0.300 1.300 22 H -0.269 1.269 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.187 4.187 26 C -0.266 4.266 27 S 0.304 5.696 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.439 0.561 32 H 0.411 0.589 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.372 0.628 36 H 0.249 0.751 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 11.605 15.501 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.266 5.266 5 C -0.128 4.128 6 N -0.213 5.213 7 C -0.125 4.125 8 C 0.375 3.625 9 O -0.443 6.443 10 N -0.334 5.334 11 C 0.070 3.930 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.386 5.386 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.266 4.266 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.183 4.183 24 C -0.202 4.202 25 C -0.224 4.224 26 C -0.409 4.409 27 S 0.556 5.444 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.281 0.719 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.204 0.796 36 H 0.058 0.942 37 H 0.148 0.852 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.065 12.859 15.482 21.681 hybrid contribution -0.049 -1.630 -1.184 2.015 sum -8.114 11.229 14.298 19.909 Atomic orbital electron populations 1.21991 0.84364 1.07714 1.07490 1.22366 0.93430 0.81006 0.73218 1.90657 1.70612 1.31837 1.49376 1.43109 1.00106 1.12826 1.70563 1.24646 0.91378 0.93575 1.03244 1.67002 1.03049 1.30365 1.20880 1.19761 0.89043 0.93744 1.09980 1.17349 0.86821 0.82566 0.75798 1.90699 1.16857 1.84230 1.52466 1.45755 1.11179 1.04496 1.72002 1.20625 0.91039 0.86205 0.95162 0.91644 1.21031 0.96556 0.94138 0.85819 1.42527 1.70134 1.10896 1.15055 1.19648 1.28555 0.92308 0.97004 0.90166 1.25574 1.03308 0.98654 0.99052 1.69860 1.53337 1.20643 1.18200 0.85117 0.78341 0.78820 0.77309 1.21122 1.22658 1.19349 1.22628 1.05986 0.98858 0.90857 1.22934 0.94739 1.03407 0.99083 1.23291 0.96383 0.99515 1.03216 1.27103 1.08991 0.97587 1.07232 1.84645 0.89676 1.04347 1.65737 0.87320 0.86390 0.85762 0.71916 0.75215 0.93967 0.94347 0.79583 0.94230 0.85184 0.90224 0.86968 0.87496 0.89054 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.32 71.24 0.74 -0.01 16 2 C 0.51 7.92 7.90 87.66 0.69 8.61 16 3 O -0.55 -12.44 14.59 -3.04 -0.04 -12.48 16 4 N -0.61 -11.00 5.40 -309.98 -1.67 -12.67 16 5 C 0.24 6.31 8.36 179.27 1.50 7.81 16 6 N -0.49 -15.37 10.11 -187.16 -1.89 -17.26 16 7 C 0.01 0.31 6.66 40.46 0.27 0.58 16 8 C 0.59 22.20 6.62 86.60 0.57 22.77 16 9 O -0.56 -23.07 13.68 -4.16 -0.06 -23.13 16 10 N -0.69 -24.93 3.05 -445.99 -1.36 -26.29 16 11 C 0.17 6.28 2.59 44.99 0.12 6.39 16 12 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 13 C 0.15 6.02 5.80 86.38 0.50 6.52 16 14 N -0.74 -38.06 5.43 -343.45 -1.87 -39.93 16 15 C -0.24 -13.52 9.99 84.04 0.84 -12.68 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 18 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 19 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 C -0.16 -4.70 5.71 -10.79 -0.06 -4.76 16 24 C -0.16 -4.29 9.74 30.62 0.30 -3.99 16 25 C -0.19 -5.26 9.82 30.62 0.30 -4.96 16 26 C -0.27 -7.66 10.55 67.05 0.71 -6.95 16 27 S 0.30 7.43 20.29 -56.49 -1.15 6.28 16 28 H 0.11 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.44 5.67 8.82 -92.71 -0.82 4.85 16 32 H 0.41 15.23 8.08 -92.71 -0.75 14.48 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 20.98 7.33 -92.70 -0.68 20.30 16 36 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.13 3.22 8.11 -2.39 -0.02 3.20 16 38 H 0.08 2.30 6.67 -2.39 -0.02 2.29 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.09 3.10 5.01 -2.39 -0.01 3.09 16 42 H 0.20 5.14 7.99 -2.91 -0.02 5.12 16 Total: -1.00 -76.11 368.76 0.06 -76.04 By element: Atomic # 1 Polarization: 46.97 SS G_CDS: -1.14 Total: 45.82 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.94 Total: 15.57 kcal Atomic # 7 Polarization: -149.56 SS G_CDS: -6.51 Total: -156.07 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.10 Total: -35.61 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -1.15 Total: 6.28 kcal Total: -76.11 0.06 -76.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269089033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.733 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds