Wall clock time and date at job start Tue Mar 31 2020 21:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00574 * 2 1 4 4 C 1.39063 * 119.89441 * 0.02562 * 3 2 1 5 5 C 1.37648 * 120.12030 * 179.72369 * 4 3 2 6 6 C 1.39786 * 119.92448 * 0.52754 * 5 4 3 7 7 C 1.47527 * 120.09851 * 179.74651 * 6 5 4 8 8 O 1.21593 * 119.99873 * 179.72478 * 7 6 5 9 9 N 1.34777 * 119.99863 * 359.72173 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72391 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 13 13 N 1.46508 * 109.47024 * 55.00011 * 12 10 9 14 14 C 1.36933 * 119.99920 * 179.97438 * 13 12 10 15 15 H 1.08010 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00299 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99433 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00477 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47161 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47356 * 120.00133 * 18 16 14 21 21 H 1.48496 * 109.47569 * 240.00529 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 23 23 C 1.53000 * 117.49472 * 8.74506 * 22 10 9 24 24 C 1.53003 * 117.49581 * 300.08841 * 22 10 9 25 25 C 1.39852 * 119.80025 * 359.47207 * 6 5 4 26 26 Cl 1.73596 * 120.06377 * 180.27395 * 25 6 5 27 27 C 1.37892 * 119.87271 * 0.25351 * 25 6 5 28 28 H 1.08998 * 109.47168 * 59.99971 * 1 2 3 29 29 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46673 * 300.00408 * 1 2 3 31 31 H 1.07999 * 119.93909 * 359.97407 * 4 3 2 32 32 H 1.08007 * 120.03658 * 180.27727 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.46944 * 174.99908 * 12 10 9 35 35 H 1.08997 * 109.47436 * 295.00057 * 12 10 9 36 36 H 0.96994 * 120.00145 * 0.02562 * 13 12 10 37 37 H 0.97005 * 119.99444 * 179.97438 * 17 16 14 38 38 H 1.08999 * 115.55354 * 154.41821 * 22 10 9 39 39 H 1.08995 * 117.49983 * 0.02562 * 23 22 10 40 40 H 1.09001 * 117.49622 * 145.02295 * 23 22 10 41 41 H 1.09002 * 117.49284 * 214.97689 * 24 22 10 42 42 H 1.08990 * 117.49881 * 359.97438 * 24 22 10 43 43 H 1.08007 * 119.95903 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9060 3.6029 0.0063 6 6 3.3017 3.6796 0.0004 7 6 3.9704 4.9947 0.0009 8 8 5.1846 5.0593 0.0009 9 7 3.2354 6.1244 0.0013 10 6 3.8994 7.4302 0.0079 11 1 4.8146 7.3695 0.5968 12 6 2.9654 8.4742 0.6233 13 7 2.5420 8.0275 1.9528 14 6 1.6979 8.8051 2.6997 15 1 1.3439 9.7476 2.3085 16 6 1.2962 8.3816 3.9591 17 7 1.7272 7.2328 4.4355 18 14 0.1442 9.4420 4.9777 19 1 -0.1924 10.6749 4.2214 20 1 -1.0998 8.6844 5.2673 21 1 0.8083 9.8096 6.2540 22 6 4.2422 7.8353 -1.4271 23 6 3.6786 6.9730 -2.5583 24 6 5.1701 6.9120 -2.2192 25 6 4.0623 2.5060 -0.0001 26 17 5.7961 2.5933 -0.0001 27 6 3.4324 1.2794 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2075 2.3145 0.0005 32 1 1.3148 4.5068 0.0112 33 1 2.2667 6.0729 0.0017 34 1 3.4906 9.4254 0.7098 35 1 2.0900 8.5991 -0.0139 36 1 2.8601 7.1813 2.3042 37 1 1.4468 6.9371 5.3158 38 1 4.3267 8.9073 -1.6056 39 1 3.0633 6.1174 -2.2802 40 1 3.3926 7.4776 -3.4811 41 1 5.8647 7.3766 -2.9191 42 1 5.5366 6.0163 -1.7180 43 1 4.0185 0.3721 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269128844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:22 Heat of formation + Delta-G solvation = 0.506959 kcal Electronic energy + Delta-G solvation = -27188.815000 eV Core-core repulsion = 23262.229179 eV Total energy + Delta-G solvation = -3926.585821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65182 -39.76355 -37.86755 -36.66426 -36.18238 -34.88413 -33.33383 -31.62924 -30.93828 -30.29532 -28.24479 -27.46764 -24.16605 -23.62421 -22.70653 -22.19960 -21.46104 -20.71605 -19.62462 -18.63872 -17.63773 -17.07802 -16.69737 -16.10197 -15.88261 -15.56241 -15.29336 -14.84949 -14.40199 -14.28206 -14.17630 -13.75523 -13.54447 -13.22857 -13.04985 -12.84250 -12.74631 -12.41219 -12.07470 -11.90630 -11.59946 -11.40224 -11.28711 -11.18340 -10.98710 -10.94313 -10.89123 -10.84749 -10.18540 -10.04063 -9.80068 -9.54769 -9.26596 -9.02910 -8.93631 -8.64706 -8.41708 -6.97736 -5.79803 -3.09754 0.72106 0.99878 2.05614 2.91114 3.01229 3.39721 3.43115 3.46423 3.48440 3.75327 4.10985 4.43445 4.54349 4.68816 4.75967 4.83479 4.86016 4.97390 5.00139 5.15471 5.18617 5.23370 5.25547 5.52644 5.56176 5.58345 5.72837 5.83053 5.88788 5.98507 6.00363 6.05027 6.07279 6.19054 6.25952 6.35348 6.49822 6.59171 6.70154 6.95607 6.99786 7.66886 7.85429 8.37778 8.54484 9.49834 10.05780 10.41337 11.42354 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.004054 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.584641 B = 6905.941804 C = 8820.808162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.162 3.838 4 C -0.213 4.213 5 C -0.026 4.026 6 C -0.162 4.162 7 C 0.558 3.442 8 O -0.520 6.520 9 N -0.704 5.704 10 C 0.170 3.830 11 H 0.093 0.907 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.160 4.160 23 C -0.178 4.178 24 C -0.186 4.186 25 C 0.054 3.946 26 Cl -0.023 7.023 27 C -0.160 4.160 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.401 0.599 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -12.756 -14.261 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.115 3.885 4 C -0.232 4.232 5 C -0.045 4.045 6 C -0.166 4.166 7 C 0.346 3.654 8 O -0.398 6.398 9 N -0.356 5.356 10 C 0.066 3.934 11 H 0.111 0.889 12 C 0.020 3.980 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.180 4.180 23 C -0.215 4.215 24 C -0.222 4.222 25 C 0.026 3.974 26 Cl 0.007 6.993 27 C -0.180 4.180 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.418 -12.729 -14.199 19.074 hybrid contribution -1.295 0.465 0.833 1.608 sum -0.877 -12.264 -13.366 18.161 Atomic orbital electron populations 1.23165 0.77659 1.04311 1.01950 1.86030 1.21967 1.26520 1.87902 1.18982 0.91616 0.84464 0.93424 1.21256 1.00743 0.91806 1.09353 1.21146 0.92667 0.98113 0.92595 1.19742 0.93410 0.93341 1.10097 1.17866 0.87100 0.83645 0.76835 1.90783 1.12821 1.87041 1.49136 1.45874 1.10350 1.05273 1.74084 1.20747 0.97260 0.81929 0.93506 0.88930 1.20918 0.94860 0.94326 0.87944 1.42366 1.56879 1.24564 1.13866 1.19255 1.19827 1.01120 0.97093 0.91093 1.24741 1.00970 0.97368 0.97678 1.69686 1.48513 1.21024 1.18575 0.86138 0.80321 0.79467 0.80362 1.20555 1.21931 1.21861 1.22689 1.05248 0.97444 0.92582 1.22871 0.97224 1.02683 0.98717 1.23338 0.92421 1.03467 1.03021 1.20607 0.86693 0.92607 0.97514 1.98421 1.06552 1.98500 1.95853 1.20121 0.91688 0.97313 1.08847 0.92233 0.87942 0.92013 0.84275 0.84112 0.76265 0.94795 0.95647 0.77961 0.93550 0.87350 0.89106 0.89640 0.89868 0.86377 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.18 10.48 -18.83 -0.20 -3.37 16 3 C 0.16 1.86 6.69 -39.03 -0.26 1.60 16 4 C -0.21 -2.32 9.01 -39.49 -0.36 -2.68 16 5 C -0.03 -0.33 9.53 -39.22 -0.37 -0.70 16 6 C -0.16 -2.38 5.88 -104.93 -0.62 -3.00 16 7 C 0.56 9.23 6.61 -12.47 -0.08 9.15 16 8 O -0.52 -9.62 10.99 5.28 0.06 -9.56 16 9 N -0.70 -11.13 2.99 -54.85 -0.16 -11.30 16 10 C 0.17 2.84 2.59 -67.93 -0.18 2.67 16 11 H 0.09 1.77 7.57 -51.93 -0.39 1.38 16 12 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 13 N -0.73 -17.78 5.43 -59.90 -0.33 -18.10 16 14 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 18 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.16 -2.27 5.71 -90.62 -0.52 -2.78 16 23 C -0.18 -2.30 9.74 -26.69 -0.26 -2.56 16 24 C -0.19 -2.61 9.83 -26.69 -0.26 -2.87 16 25 C 0.05 0.77 6.35 -39.10 -0.25 0.52 16 26 Cl -0.02 -0.34 26.01 -51.86 -1.35 -1.69 16 27 C -0.16 -1.97 9.75 -39.46 -0.38 -2.36 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.14 1.16 6.27 -52.49 -0.33 0.83 16 32 H 0.14 1.59 6.40 -52.48 -0.34 1.25 16 33 H 0.40 5.99 6.62 -40.82 -0.27 5.72 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16 39 H 0.09 1.20 6.68 -51.93 -0.35 0.85 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.12 1.92 5.03 -51.93 -0.26 1.66 16 43 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -31.76 366.86 -9.10 -40.86 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.53 Total: 13.78 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.82 Total: -6.19 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.23 Total: -56.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.14 Total: -12.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.35 Total: -1.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.76 -9.10 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269128844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.372 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds