Wall clock time and date at job start Tue Mar 31 2020 21:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00574 * 2 1 4 4 C 1.39063 * 119.89441 * 0.02562 * 3 2 1 5 5 C 1.37648 * 120.12030 * 179.72369 * 4 3 2 6 6 C 1.39786 * 119.92448 * 0.52754 * 5 4 3 7 7 C 1.47527 * 120.09851 * 179.74651 * 6 5 4 8 8 O 1.21593 * 119.99873 * 179.72478 * 7 6 5 9 9 N 1.34777 * 119.99863 * 359.72173 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72391 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 13 13 N 1.46508 * 109.47024 * 55.00011 * 12 10 9 14 14 C 1.36933 * 119.99920 * 179.97438 * 13 12 10 15 15 H 1.08010 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00299 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99433 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00477 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47161 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47356 * 120.00133 * 18 16 14 21 21 H 1.48496 * 109.47569 * 240.00529 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 23 23 C 1.53000 * 117.49472 * 8.74506 * 22 10 9 24 24 C 1.53003 * 117.49581 * 300.08841 * 22 10 9 25 25 C 1.39852 * 119.80025 * 359.47207 * 6 5 4 26 26 Cl 1.73596 * 120.06377 * 180.27395 * 25 6 5 27 27 C 1.37892 * 119.87271 * 0.25351 * 25 6 5 28 28 H 1.08998 * 109.47168 * 59.99971 * 1 2 3 29 29 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46673 * 300.00408 * 1 2 3 31 31 H 1.07999 * 119.93909 * 359.97407 * 4 3 2 32 32 H 1.08007 * 120.03658 * 180.27727 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.46944 * 174.99908 * 12 10 9 35 35 H 1.08997 * 109.47436 * 295.00057 * 12 10 9 36 36 H 0.96994 * 120.00145 * 0.02562 * 13 12 10 37 37 H 0.97005 * 119.99444 * 179.97438 * 17 16 14 38 38 H 1.08999 * 115.55354 * 154.41821 * 22 10 9 39 39 H 1.08995 * 117.49983 * 0.02562 * 23 22 10 40 40 H 1.09001 * 117.49622 * 145.02295 * 23 22 10 41 41 H 1.09002 * 117.49284 * 214.97689 * 24 22 10 42 42 H 1.08990 * 117.49881 * 359.97438 * 24 22 10 43 43 H 1.08007 * 119.95903 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9060 3.6029 0.0063 6 6 3.3017 3.6796 0.0004 7 6 3.9704 4.9947 0.0009 8 8 5.1846 5.0593 0.0009 9 7 3.2354 6.1244 0.0013 10 6 3.8994 7.4302 0.0079 11 1 4.8146 7.3695 0.5968 12 6 2.9654 8.4742 0.6233 13 7 2.5420 8.0275 1.9528 14 6 1.6979 8.8051 2.6997 15 1 1.3439 9.7476 2.3085 16 6 1.2962 8.3816 3.9591 17 7 1.7272 7.2328 4.4355 18 14 0.1442 9.4420 4.9777 19 1 -0.1924 10.6749 4.2214 20 1 -1.0998 8.6844 5.2673 21 1 0.8083 9.8096 6.2540 22 6 4.2422 7.8353 -1.4271 23 6 3.6786 6.9730 -2.5583 24 6 5.1701 6.9120 -2.2192 25 6 4.0623 2.5060 -0.0001 26 17 5.7961 2.5933 -0.0001 27 6 3.4324 1.2794 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2075 2.3145 0.0005 32 1 1.3148 4.5068 0.0112 33 1 2.2667 6.0729 0.0017 34 1 3.4906 9.4254 0.7098 35 1 2.0900 8.5991 -0.0139 36 1 2.8601 7.1813 2.3042 37 1 1.4468 6.9371 5.3158 38 1 4.3267 8.9073 -1.6056 39 1 3.0633 6.1174 -2.2802 40 1 3.3926 7.4776 -3.4811 41 1 5.8647 7.3766 -2.9191 42 1 5.5366 6.0163 -1.7180 43 1 4.0185 0.3721 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269128844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:21 Heat of formation + Delta-G solvation = -18.480385 kcal Electronic energy + Delta-G solvation = -27189.638353 eV Core-core repulsion = 23262.229179 eV Total energy + Delta-G solvation = -3927.409174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69410 -40.82124 -38.89773 -37.85881 -37.23765 -36.52144 -34.81898 -33.18953 -32.14268 -31.38831 -29.67462 -28.23960 -25.97340 -24.69845 -23.74129 -23.39846 -22.90212 -21.84620 -20.87934 -19.62302 -19.19663 -18.47978 -17.69411 -17.21071 -16.83140 -16.76517 -16.54268 -16.22558 -15.78063 -15.38415 -15.21683 -15.17786 -14.90805 -14.63003 -14.51114 -13.97227 -13.85082 -13.53876 -13.12396 -13.08854 -12.84682 -12.76469 -12.69483 -12.63811 -12.32133 -12.22799 -12.02397 -11.97547 -11.85844 -11.80486 -11.19405 -10.97987 -10.78861 -10.50537 -10.01846 -9.91863 -9.39581 -8.99105 -7.92191 -5.21769 -0.30609 0.04186 1.01914 1.49092 1.50616 1.59997 1.80574 2.14480 2.31145 2.57212 2.65702 2.99359 3.42371 3.53162 3.62282 3.75427 3.85099 4.00040 4.03157 4.14020 4.18136 4.21700 4.38592 4.42077 4.45012 4.53335 4.61439 4.67158 4.77851 4.82345 4.86936 4.91694 5.01516 5.08101 5.10067 5.18545 5.28136 5.30858 5.44852 5.53102 5.62577 6.21081 6.28148 6.59690 7.28936 7.35886 8.09095 8.33352 9.30863 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.004054 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.584641 B = 6905.941804 C = 8820.808162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.168 3.832 4 C -0.206 4.206 5 C -0.028 4.028 6 C -0.186 4.186 7 C 0.555 3.445 8 O -0.546 6.546 9 N -0.700 5.700 10 C 0.181 3.819 11 H 0.062 0.938 12 C 0.151 3.849 13 N -0.742 5.742 14 C -0.241 4.241 15 H 0.079 0.921 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.299 1.299 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.190 4.190 25 C 0.041 3.959 26 Cl -0.038 7.038 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.406 0.594 34 H 0.037 0.963 35 H 0.042 0.958 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -12.689 -15.630 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.121 3.879 4 C -0.224 4.224 5 C -0.047 4.047 6 C -0.190 4.190 7 C 0.343 3.657 8 O -0.426 6.426 9 N -0.352 5.352 10 C 0.076 3.924 11 H 0.080 0.920 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.373 4.373 15 H 0.097 0.903 16 C -0.264 4.264 17 N -0.618 5.618 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.220 1.220 21 H -0.227 1.227 22 C -0.183 4.183 23 C -0.198 4.198 24 C -0.227 4.227 25 C 0.013 3.987 26 Cl -0.009 7.009 27 C -0.184 4.184 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.168 0.832 33 H 0.243 0.757 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.206 0.794 37 H 0.058 0.942 38 H 0.142 0.858 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.734 -12.641 -15.614 20.164 hybrid contribution -0.674 0.361 1.207 1.429 sum -2.408 -12.280 -14.407 19.082 Atomic orbital electron populations 1.23523 0.75473 1.06261 1.02933 1.86040 1.24183 1.25692 1.87325 1.19061 0.91411 0.85293 0.92145 1.21555 1.02234 0.90818 1.07835 1.21296 0.91765 0.99326 0.92285 1.19713 0.94467 0.92384 1.12443 1.18194 0.86912 0.84388 0.76206 1.90765 1.13967 1.87475 1.50387 1.45789 1.10467 1.04894 1.74019 1.20477 0.95334 0.81862 0.94750 0.92019 1.21033 0.95717 0.94939 0.85922 1.42533 1.56580 1.23911 1.15539 1.19661 1.19099 1.01261 0.97252 0.90282 1.25506 1.03112 0.98678 0.99081 1.69847 1.50391 1.22911 1.18693 0.85116 0.78110 0.78382 0.78376 1.18902 1.21974 1.22708 1.22604 1.06202 0.98390 0.91152 1.22939 0.96082 1.02002 0.98769 1.23269 0.93592 1.02588 1.03267 1.20730 0.86035 0.93304 0.98635 1.98406 1.07892 1.98563 1.96037 1.20268 0.92541 0.97013 1.08597 0.90696 0.85715 0.91481 0.81262 0.83155 0.75729 0.94535 0.94018 0.79373 0.94202 0.85772 0.89474 0.87277 0.88207 0.88835 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.78 10.48 -90.28 -0.95 -6.73 16 3 C 0.17 3.59 6.69 22.63 0.15 3.74 16 4 C -0.21 -4.08 9.01 22.33 0.20 -3.88 16 5 C -0.03 -0.67 9.53 22.50 0.21 -0.46 16 6 C -0.19 -5.54 5.88 -20.06 -0.12 -5.66 16 7 C 0.55 18.89 6.61 86.69 0.57 19.46 16 8 O -0.55 -21.17 10.99 -4.01 -0.04 -21.21 16 9 N -0.70 -22.35 2.99 -445.71 -1.33 -23.68 16 10 C 0.18 6.07 2.59 44.99 0.12 6.19 16 11 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 12 C 0.15 5.65 5.80 86.38 0.50 6.16 16 13 N -0.74 -36.13 5.43 -343.43 -1.87 -37.99 16 14 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 18 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 C -0.16 -4.46 5.71 -10.79 -0.06 -4.52 16 23 C -0.16 -3.85 9.74 30.62 0.30 -3.56 16 24 C -0.19 -5.20 9.83 30.62 0.30 -4.90 16 25 C 0.04 1.19 6.35 22.58 0.14 1.33 16 26 Cl -0.04 -1.18 26.01 -2.72 -0.07 -1.25 16 27 C -0.16 -3.98 9.75 22.35 0.22 -3.76 16 28 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.61 7.65 -2.39 -0.02 0.59 16 31 H 0.17 2.25 6.27 -2.91 -0.02 2.23 16 32 H 0.15 3.23 6.40 -2.91 -0.02 3.21 16 33 H 0.41 12.02 6.62 -92.71 -0.61 11.41 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.37 19.92 7.33 -92.71 -0.68 19.24 16 37 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 38 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 39 H 0.09 2.17 6.68 -2.39 -0.02 2.15 16 40 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.09 3.12 5.03 -2.39 -0.01 3.11 16 43 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -68.93 366.86 2.78 -66.15 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.23 Total: 39.92 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.96 Total: -4.22 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -2.92 Total: -119.71 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.99 Total: -27.94 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -68.93 2.78 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269128844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.673 kcal (2) G-P(sol) polarization free energy of solvation -68.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds