Wall clock time and date at job start Tue Mar 31 2020 21:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35934 * 116.99848 * 2 1 4 4 C 1.38406 * 119.98949 * 0.02562 * 3 2 1 5 5 C 1.39545 * 119.80461 * 179.97438 * 4 3 2 6 6 C 1.47801 * 120.10531 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99978 * 22.65402 * 6 5 4 8 8 N 1.34775 * 120.00006 * 202.64801 * 6 5 4 9 9 C 1.47419 * 125.64854 * 5.98511 * 8 6 5 10 10 C 1.54914 * 104.83192 * 155.91559 * 9 8 6 11 11 C 1.55152 * 101.58022 * 37.01252 * 10 9 8 12 12 C 1.47022 * 125.64960 * 186.04030 * 8 6 5 13 13 H 1.09006 * 110.00657 * 300.50598 * 12 8 6 14 14 C 1.52996 * 109.88367 * 61.59252 * 12 8 6 15 15 N 1.46497 * 109.47622 * 282.66702 * 14 12 8 16 16 C 1.36931 * 119.99999 * 173.20942 * 15 14 12 17 17 H 1.08000 * 120.00171 * 352.81152 * 16 15 14 18 18 C 1.38819 * 119.99741 * 172.80724 * 16 15 14 19 19 N 1.31619 * 119.99809 * 194.88517 * 18 16 15 20 20 Si 1.86795 * 119.99966 * 14.88930 * 18 16 15 21 21 H 1.48499 * 109.46984 * 276.50044 * 20 18 16 22 22 H 1.48498 * 109.47239 * 36.49936 * 20 18 16 23 23 H 1.48496 * 109.47270 * 156.50223 * 20 18 16 24 24 C 1.39628 * 119.78897 * 0.25422 * 5 4 3 25 25 C 1.37920 * 119.97150 * 359.49203 * 24 5 4 26 26 C 1.38420 * 120.19241 * 0.52902 * 25 24 5 27 27 Cl 1.73603 * 119.89152 * 179.72175 * 26 25 24 28 28 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46724 * 299.99353 * 1 2 3 30 30 H 1.08998 * 109.47415 * 59.99486 * 1 2 3 31 31 H 1.07998 * 120.09488 * 0.02633 * 4 3 2 32 32 H 1.09007 * 110.36978 * 37.07731 * 9 8 6 33 33 H 1.09004 * 110.46298 * 274.80071 * 9 8 6 34 34 H 1.09000 * 111.00238 * 278.93788 * 10 9 8 35 35 H 1.09005 * 111.03671 * 155.10325 * 10 9 8 36 36 H 1.09000 * 110.71732 * 206.13843 * 11 10 9 37 37 H 1.09000 * 110.72472 * 82.86559 * 11 10 9 38 38 H 1.09004 * 109.46979 * 162.66541 * 14 12 8 39 39 H 1.09003 * 109.46888 * 42.66983 * 14 12 8 40 40 H 0.97006 * 119.99649 * 353.20969 * 15 14 12 41 41 H 0.97007 * 119.99977 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.01160 * 179.74558 * 24 5 4 43 43 H 1.08005 * 119.90569 * 180.25423 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2921 2.3718 0.0005 5 6 1.9296 3.6131 0.0011 6 6 1.1309 4.8567 0.0011 7 8 -0.0152 4.8430 0.4061 8 7 1.6732 6.0060 -0.4479 9 6 2.9988 6.1416 -1.0785 10 6 2.8994 7.4267 -1.9379 11 6 2.0175 8.3342 -1.0403 12 6 1.0414 7.3322 -0.3888 13 1 0.0997 7.3214 -0.9379 14 6 0.7891 7.7239 1.0685 15 7 -0.3875 7.0094 1.5697 16 6 -0.7267 7.0930 2.8937 17 1 -0.0661 7.5878 3.5902 18 6 -1.9199 6.5418 3.3406 19 7 -2.3904 6.8647 4.5266 20 14 -2.8574 5.3418 2.2588 21 1 -3.6960 6.0968 1.2934 22 1 -1.8950 4.4884 1.5167 23 1 -3.7265 4.4864 3.1061 24 6 3.3244 3.6766 -0.0043 25 6 4.0671 2.5144 0.0005 26 6 3.4338 1.2836 -0.0005 27 17 4.3762 -0.1743 -0.0017 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2135 2.3168 0.0014 32 1 3.2087 5.2782 -1.7100 33 1 3.7727 6.2522 -0.3189 34 1 2.4087 7.2232 -2.8897 35 1 3.8830 7.8696 -2.0947 36 1 1.4762 9.0635 -1.6430 37 1 2.6224 8.8318 -0.2823 38 1 0.6158 8.7982 1.1311 39 1 1.6583 7.4604 1.6712 40 1 -0.9263 6.4770 0.9636 41 1 -3.2240 6.4793 4.8391 42 1 3.8215 4.6354 -0.0081 43 1 5.1460 2.5648 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270276286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:28 Heat of formation + Delta-G solvation = -7.636411 kcal Electronic energy + Delta-G solvation = -27775.698899 eV Core-core repulsion = 23848.759955 eV Total energy + Delta-G solvation = -3926.938944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79615 -39.78740 -37.74901 -37.16094 -36.46304 -34.47633 -32.14677 -31.40718 -30.97634 -30.31112 -29.16395 -27.49490 -25.44656 -24.35199 -22.74762 -22.43116 -21.39584 -21.14402 -19.45014 -18.27342 -17.47115 -16.85894 -16.69969 -16.46490 -16.00840 -15.91510 -15.10545 -14.47744 -14.34514 -14.23847 -13.96118 -13.79955 -13.58995 -13.33345 -13.20835 -12.92433 -12.51508 -12.38134 -12.09717 -12.04248 -11.77211 -11.69430 -11.59637 -11.49514 -11.37267 -11.14301 -10.93330 -10.75477 -10.64630 -10.40246 -9.95903 -9.57908 -9.36032 -9.12186 -8.57588 -8.45003 -8.40805 -6.98035 -5.60627 -2.89740 0.56987 1.06103 1.93196 2.83367 2.91350 3.07420 3.58441 3.60778 3.67195 3.88889 4.31803 4.39535 4.50243 4.68891 4.76677 4.83396 4.87096 4.88304 5.00338 5.04382 5.14446 5.17917 5.27918 5.36880 5.38239 5.44599 5.60447 5.63739 5.69884 5.74677 5.82442 5.85790 5.90123 6.04639 6.09101 6.17514 6.23358 6.33316 6.68044 6.81627 6.97502 7.66914 8.17596 8.45041 8.60516 9.47667 10.20250 10.42351 11.56831 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.004465 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.323695 B = 6270.105857 C = 8267.691916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.131 3.869 4 C -0.143 4.143 5 C -0.070 4.070 6 C 0.561 3.439 7 O -0.482 6.482 8 N -0.609 5.609 9 C 0.093 3.907 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.127 3.873 13 H 0.076 0.924 14 C 0.151 3.849 15 N -0.744 5.744 16 C -0.240 4.240 17 H 0.081 0.919 18 C 0.008 3.992 19 N -0.935 5.935 20 Si 0.856 3.144 21 H -0.292 1.292 22 H -0.234 1.234 23 H -0.301 1.301 24 C -0.129 4.129 25 C -0.081 4.081 26 C -0.054 4.054 27 Cl -0.058 7.058 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.373 0.627 41 H 0.256 0.744 42 H 0.151 0.849 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.239 -8.574 -17.123 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.218 6.218 3 C 0.084 3.916 4 C -0.162 4.162 5 C -0.074 4.074 6 C 0.349 3.651 7 O -0.355 6.355 8 N -0.345 5.345 9 C -0.030 4.030 10 C -0.172 4.172 11 C -0.162 4.162 12 C 0.024 3.976 13 H 0.094 0.906 14 C 0.023 3.977 15 N -0.394 5.394 16 C -0.370 4.370 17 H 0.099 0.901 18 C -0.187 4.187 19 N -0.583 5.583 20 Si 0.686 3.314 21 H -0.219 1.219 22 H -0.157 1.157 23 H -0.228 1.228 24 C -0.147 4.147 25 C -0.099 4.099 26 C -0.081 4.081 27 Cl -0.029 7.029 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.211 0.789 41 H 0.065 0.935 42 H 0.168 0.832 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.705 -8.936 -16.646 24.569 hybrid contribution -0.882 -0.849 -0.409 1.290 sum 14.824 -9.785 -17.055 24.625 Atomic orbital electron populations 1.23196 0.77488 1.04388 1.02232 1.86142 1.21976 1.25362 1.88314 1.18518 0.90409 0.85211 0.97416 1.21322 1.01249 0.90156 1.03509 1.19875 0.93659 0.93359 1.00493 1.17875 0.86857 0.81962 0.78437 1.90928 1.16661 1.84097 1.43840 1.48324 1.18249 1.07099 1.60866 1.22621 0.85782 0.98758 0.95805 1.22806 1.00811 0.95157 0.98406 1.22643 0.97520 0.97131 0.98942 1.21980 0.96239 0.80991 0.98425 0.90602 1.20982 0.91227 0.95511 0.90003 1.42866 1.30118 1.58348 1.08064 1.18943 1.02420 1.31164 0.84451 0.90123 1.24546 0.96659 1.01052 0.96470 1.69815 1.21809 1.46426 1.20251 0.86913 0.80289 0.83748 0.80489 1.21938 1.15740 1.22846 1.21773 0.92739 0.99348 1.00848 1.20845 1.00648 0.89398 0.99049 1.20361 0.88714 0.88910 1.10138 1.98364 1.71693 1.35851 1.96956 0.87742 0.91826 0.92256 0.83336 0.90299 0.91041 0.90652 0.89816 0.89910 0.90030 0.95249 0.95549 0.78889 0.93477 0.83202 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.82 9.94 -19.53 -0.19 -4.02 16 3 C 0.13 1.73 6.67 -39.26 -0.26 1.47 16 4 C -0.14 -2.05 8.57 -39.03 -0.33 -2.39 16 5 C -0.07 -1.03 5.70 -104.98 -0.60 -1.63 16 6 C 0.56 9.81 7.40 -12.35 -0.09 9.72 16 7 O -0.48 -10.71 11.17 5.31 0.06 -10.65 16 8 N -0.61 -8.83 3.06 -164.13 -0.50 -9.33 16 9 C 0.09 0.88 4.96 -2.53 -0.01 0.86 16 10 C -0.13 -1.04 7.08 -24.58 -0.17 -1.21 16 11 C -0.12 -1.26 6.43 -24.90 -0.16 -1.42 16 12 C 0.13 1.93 3.02 -66.96 -0.20 1.72 16 13 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 14 C 0.15 3.03 5.60 -4.05 -0.02 3.01 16 15 N -0.74 -19.15 4.23 -59.91 -0.25 -19.41 16 16 C -0.24 -7.30 10.42 -15.06 -0.16 -7.45 16 17 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 19 N -0.94 -31.17 13.97 55.49 0.78 -30.39 16 20 Si 0.86 23.72 27.34 -169.99 -4.65 19.07 16 21 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 22 H -0.23 -6.26 5.05 56.52 0.29 -5.98 16 23 H -0.30 -8.42 7.11 56.52 0.40 -8.02 16 24 C -0.13 -1.45 8.08 -39.18 -0.32 -1.76 16 25 C -0.08 -0.83 9.80 -39.63 -0.39 -1.22 16 26 C -0.05 -0.64 6.34 -39.25 -0.25 -0.89 16 27 Cl -0.06 -0.64 28.49 -51.86 -1.48 -2.12 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 30 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.15 2.20 6.05 -52.49 -0.32 1.88 16 32 H 0.08 0.64 6.75 -51.93 -0.35 0.29 16 33 H 0.07 0.59 6.85 -51.93 -0.36 0.23 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 38 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.37 9.73 3.62 -40.82 -0.15 9.58 16 41 H 0.26 8.15 8.31 -40.82 -0.34 7.81 16 42 H 0.15 1.37 4.39 -52.49 -0.23 1.14 16 43 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -37.82 354.99 -8.62 -46.44 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.65 Total: 4.86 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.07 Total: 0.19 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.02 Total: -59.13 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.13 Total: -14.67 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.65 Total: 19.07 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.82 -8.62 -46.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270276286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.808 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds