Wall clock time and date at job start Tue Mar 31 2020 21:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35934 * 116.99848 * 2 1 4 4 C 1.38406 * 119.98949 * 0.02562 * 3 2 1 5 5 C 1.39545 * 119.80461 * 179.97438 * 4 3 2 6 6 C 1.47801 * 120.10531 * 179.97438 * 5 4 3 7 7 O 1.21563 * 119.99978 * 22.65402 * 6 5 4 8 8 N 1.34775 * 120.00006 * 202.64801 * 6 5 4 9 9 C 1.47419 * 125.64854 * 5.98511 * 8 6 5 10 10 C 1.54914 * 104.83192 * 155.91559 * 9 8 6 11 11 C 1.55152 * 101.58022 * 37.01252 * 10 9 8 12 12 C 1.47022 * 125.64960 * 186.04030 * 8 6 5 13 13 H 1.09006 * 110.00657 * 300.50598 * 12 8 6 14 14 C 1.52996 * 109.88367 * 61.59252 * 12 8 6 15 15 N 1.46497 * 109.47622 * 282.66702 * 14 12 8 16 16 C 1.36931 * 119.99999 * 173.20942 * 15 14 12 17 17 H 1.08000 * 120.00171 * 352.81152 * 16 15 14 18 18 C 1.38819 * 119.99741 * 172.80724 * 16 15 14 19 19 N 1.31619 * 119.99809 * 194.88517 * 18 16 15 20 20 Si 1.86795 * 119.99966 * 14.88930 * 18 16 15 21 21 H 1.48499 * 109.46984 * 276.50044 * 20 18 16 22 22 H 1.48498 * 109.47239 * 36.49936 * 20 18 16 23 23 H 1.48496 * 109.47270 * 156.50223 * 20 18 16 24 24 C 1.39628 * 119.78897 * 0.25422 * 5 4 3 25 25 C 1.37920 * 119.97150 * 359.49203 * 24 5 4 26 26 C 1.38420 * 120.19241 * 0.52902 * 25 24 5 27 27 Cl 1.73603 * 119.89152 * 179.72175 * 26 25 24 28 28 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46724 * 299.99353 * 1 2 3 30 30 H 1.08998 * 109.47415 * 59.99486 * 1 2 3 31 31 H 1.07998 * 120.09488 * 0.02633 * 4 3 2 32 32 H 1.09007 * 110.36978 * 37.07731 * 9 8 6 33 33 H 1.09004 * 110.46298 * 274.80071 * 9 8 6 34 34 H 1.09000 * 111.00238 * 278.93788 * 10 9 8 35 35 H 1.09005 * 111.03671 * 155.10325 * 10 9 8 36 36 H 1.09000 * 110.71732 * 206.13843 * 11 10 9 37 37 H 1.09000 * 110.72472 * 82.86559 * 11 10 9 38 38 H 1.09004 * 109.46979 * 162.66541 * 14 12 8 39 39 H 1.09003 * 109.46888 * 42.66983 * 14 12 8 40 40 H 0.97006 * 119.99649 * 353.20969 * 15 14 12 41 41 H 0.97007 * 119.99977 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.01160 * 179.74558 * 24 5 4 43 43 H 1.08005 * 119.90569 * 180.25423 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2921 2.3718 0.0005 5 6 1.9296 3.6131 0.0011 6 6 1.1309 4.8567 0.0011 7 8 -0.0152 4.8430 0.4061 8 7 1.6732 6.0060 -0.4479 9 6 2.9988 6.1416 -1.0785 10 6 2.8994 7.4267 -1.9379 11 6 2.0175 8.3342 -1.0403 12 6 1.0414 7.3322 -0.3888 13 1 0.0997 7.3214 -0.9379 14 6 0.7891 7.7239 1.0685 15 7 -0.3875 7.0094 1.5697 16 6 -0.7267 7.0930 2.8937 17 1 -0.0661 7.5878 3.5902 18 6 -1.9199 6.5418 3.3406 19 7 -2.3904 6.8647 4.5266 20 14 -2.8574 5.3418 2.2588 21 1 -3.6960 6.0968 1.2934 22 1 -1.8950 4.4884 1.5167 23 1 -3.7265 4.4864 3.1061 24 6 3.3244 3.6766 -0.0043 25 6 4.0671 2.5144 0.0005 26 6 3.4338 1.2836 -0.0005 27 17 4.3762 -0.1743 -0.0017 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2135 2.3168 0.0014 32 1 3.2087 5.2782 -1.7100 33 1 3.7727 6.2522 -0.3189 34 1 2.4087 7.2232 -2.8897 35 1 3.8830 7.8696 -2.0947 36 1 1.4762 9.0635 -1.6430 37 1 2.6224 8.8318 -0.2823 38 1 0.6158 8.7982 1.1311 39 1 1.6583 7.4604 1.6712 40 1 -0.9263 6.4770 0.9636 41 1 -3.2240 6.4793 4.8391 42 1 3.8215 4.6354 -0.0081 43 1 5.1460 2.5648 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270276286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:27 Heat of formation + Delta-G solvation = -33.775955 kcal Electronic energy + Delta-G solvation = -27776.832395 eV Core-core repulsion = 23848.759955 eV Total energy + Delta-G solvation = -3928.072440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.84053 -40.81756 -38.74369 -38.26770 -37.41644 -36.40080 -33.73491 -32.97183 -31.93047 -31.35963 -30.54539 -28.36579 -26.87422 -25.61953 -24.10135 -23.45901 -22.89247 -22.03346 -20.65398 -19.80693 -19.02435 -17.97406 -17.70461 -17.45743 -16.98732 -16.91040 -16.63200 -16.30936 -15.63941 -15.29512 -15.23972 -14.85485 -14.73833 -14.50614 -14.31370 -14.23790 -13.83947 -13.73980 -13.56973 -13.31851 -12.94806 -12.92752 -12.72528 -12.60100 -12.53399 -12.24588 -12.08373 -11.98703 -11.95521 -11.74155 -11.71539 -11.49231 -10.91542 -10.83693 -10.09466 -9.63629 -9.38446 -9.17040 -8.05251 -5.29423 -0.44164 0.14121 1.02338 1.32960 1.36630 1.68284 1.71707 1.90779 2.12556 2.53870 2.56709 3.24206 3.35810 3.52687 3.61305 3.72235 3.84628 3.91454 4.03565 4.16984 4.22864 4.23232 4.26138 4.29029 4.36492 4.55495 4.58957 4.62533 4.73706 4.78236 4.83041 4.87513 4.96571 5.04448 5.11707 5.13460 5.20409 5.38337 5.42194 5.54229 5.74701 6.04864 6.20108 6.53180 7.08647 7.24726 7.97713 8.17278 9.15403 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.004465 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.323695 B = 6270.105857 C = 8267.691916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.315 6.315 3 C 0.121 3.879 4 C -0.159 4.159 5 C -0.091 4.091 6 C 0.551 3.449 7 O -0.546 6.546 8 N -0.608 5.608 9 C 0.081 3.919 10 C -0.119 4.119 11 C -0.115 4.115 12 C 0.128 3.872 13 H 0.058 0.942 14 C 0.145 3.855 15 N -0.750 5.750 16 C -0.225 4.225 17 H 0.052 0.948 18 C -0.056 4.056 19 N -0.980 5.980 20 Si 0.923 3.077 21 H -0.290 1.290 22 H -0.225 1.225 23 H -0.305 1.305 24 C -0.116 4.116 25 C -0.067 4.067 26 C -0.059 4.059 27 Cl -0.048 7.048 28 H 0.131 0.869 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.020 0.980 40 H 0.373 0.627 41 H 0.254 0.746 42 H 0.177 0.823 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.499 -8.784 -19.814 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.228 6.228 3 C 0.075 3.925 4 C -0.179 4.179 5 C -0.095 4.095 6 C 0.340 3.660 7 O -0.424 6.424 8 N -0.341 5.341 9 C -0.039 4.039 10 C -0.157 4.157 11 C -0.154 4.154 12 C 0.024 3.976 13 H 0.076 0.924 14 C 0.018 3.982 15 N -0.399 5.399 16 C -0.356 4.356 17 H 0.070 0.930 18 C -0.247 4.247 19 N -0.631 5.631 20 Si 0.752 3.248 21 H -0.217 1.217 22 H -0.148 1.148 23 H -0.233 1.233 24 C -0.134 4.134 25 C -0.085 4.085 26 C -0.087 4.087 27 Cl -0.019 7.019 28 H 0.149 0.851 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.211 0.789 41 H 0.063 0.937 42 H 0.193 0.807 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 19.049 -9.124 -19.407 28.684 hybrid contribution -1.752 -0.747 0.423 1.952 sum 17.296 -9.871 -18.984 27.513 Atomic orbital electron populations 1.23364 0.76442 1.05995 1.01814 1.86123 1.23117 1.25214 1.88322 1.18643 0.91104 0.84969 0.97810 1.21253 1.00776 0.90970 1.04923 1.19808 0.94971 0.91969 1.02711 1.18420 0.86458 0.83442 0.77657 1.90845 1.19311 1.85215 1.47015 1.48454 1.19988 1.05908 1.59782 1.23047 0.83421 1.00726 0.96746 1.22830 1.02081 0.93267 0.97482 1.22652 0.96844 0.96397 0.99478 1.21943 0.97612 0.83029 0.94986 0.92393 1.21243 0.88698 0.95070 0.93177 1.42997 1.31943 1.58791 1.06174 1.19000 1.01386 1.29050 0.86185 0.93002 1.25246 0.98215 1.03238 0.98032 1.69948 1.22655 1.48234 1.22306 0.85878 0.78868 0.81497 0.78588 1.21672 1.14798 1.23286 1.22022 0.91145 1.00938 0.99287 1.21252 1.02330 0.88071 0.96832 1.20641 0.88423 0.90024 1.09595 1.98369 1.71165 1.35548 1.96865 0.85069 0.93181 0.91816 0.84999 0.88412 0.88976 0.90110 0.86227 0.88394 0.89182 0.94719 0.96175 0.78902 0.93731 0.80650 0.80047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.31 -7.78 9.94 -92.80 -0.92 -8.70 16 3 C 0.12 3.14 6.67 22.48 0.15 3.29 16 4 C -0.16 -4.65 8.57 22.63 0.19 -4.46 16 5 C -0.09 -2.59 5.70 -20.10 -0.11 -2.71 16 6 C 0.55 19.24 7.40 86.77 0.64 19.88 16 7 O -0.55 -24.95 11.17 -3.91 -0.04 -24.99 16 8 N -0.61 -16.60 3.06 -791.47 -2.43 -19.03 16 9 C 0.08 1.19 4.96 86.86 0.43 1.62 16 10 C -0.12 -1.25 7.08 31.99 0.23 -1.02 16 11 C -0.12 -1.93 6.43 31.78 0.20 -1.73 16 12 C 0.13 3.73 3.02 45.34 0.14 3.87 16 13 H 0.06 1.90 8.08 -2.38 -0.02 1.89 16 14 C 0.15 5.81 5.60 86.38 0.48 6.29 16 15 N -0.75 -39.41 4.23 -343.45 -1.45 -40.86 16 16 C -0.22 -14.13 10.42 84.04 0.88 -13.25 16 17 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.98 -67.63 13.97 21.65 0.30 -67.33 16 20 Si 0.92 51.48 27.34 68.60 1.88 53.35 16 21 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 22 H -0.22 -12.20 5.05 99.48 0.50 -11.69 16 23 H -0.31 -17.01 7.11 99.48 0.71 -16.30 16 24 C -0.12 -2.26 8.08 22.53 0.18 -2.07 16 25 C -0.07 -1.13 9.80 22.24 0.22 -0.91 16 26 C -0.06 -1.29 6.34 22.48 0.14 -1.15 16 27 Cl -0.05 -0.96 28.49 -2.72 -0.08 -1.04 16 28 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 30 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 31 H 0.13 4.18 6.05 -2.91 -0.02 4.17 16 32 H 0.10 1.13 6.75 -2.38 -0.02 1.11 16 33 H 0.09 1.03 6.85 -2.39 -0.02 1.02 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.40 7.85 -2.39 -0.02 1.38 16 38 H 0.04 1.36 8.07 -2.39 -0.02 1.34 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.37 19.86 3.62 -92.70 -0.34 19.52 16 41 H 0.25 16.77 8.31 -92.70 -0.77 16.00 16 42 H 0.18 2.42 4.39 -2.91 -0.01 2.40 16 43 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -87.32 354.99 3.12 -84.21 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.51 Total: 18.43 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.35 Total: 5.96 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -3.58 Total: -127.22 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.97 Total: -33.70 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.88 Total: 53.35 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -87.32 3.12 -84.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270276286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.430 kcal (2) G-P(sol) polarization free energy of solvation -87.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds