Wall clock time and date at job start Tue Mar 31 2020 20:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00474 * 2 1 4 4 O 1.21601 * 120.00500 * 177.46287 * 3 2 1 5 5 C 1.47433 * 119.99709 * 357.45611 * 3 2 1 6 6 C 1.41288 * 126.41256 * 200.43588 * 5 3 2 7 7 N 1.30446 * 108.02217 * 179.88079 * 6 5 3 8 8 N 1.39935 * 108.89531 * 0.38688 * 7 6 5 9 9 H 0.97009 * 125.75156 * 179.73058 * 8 7 6 10 10 C 1.34258 * 108.49255 * 359.75135 * 8 7 6 11 11 C 1.46499 * 119.99431 * 179.97438 * 2 1 3 12 12 C 1.53774 * 113.61467 * 60.00281 * 11 2 1 13 13 C 1.53788 * 87.07901 * 220.01467 * 12 11 2 14 14 N 1.46501 * 113.61510 * 270.88325 * 13 12 11 15 15 C 1.34773 * 119.99766 * 205.00439 * 14 13 12 16 16 O 1.21285 * 120.00238 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00045 * 180.02562 * 15 14 13 18 18 S 1.80993 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99916 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00047 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99750 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00420 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46829 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47409 * 119.99614 * 23 21 19 26 26 H 1.48502 * 109.47064 * 239.99513 * 23 21 19 27 27 C 1.53778 * 113.61600 * 322.49888 * 11 2 1 28 28 H 1.09006 * 109.47370 * 275.97477 * 1 2 3 29 29 H 1.09008 * 109.46914 * 35.96237 * 1 2 3 30 30 H 1.08994 * 109.47597 * 155.96716 * 1 2 3 31 31 H 1.08002 * 125.99008 * 0.02562 * 6 5 3 32 32 H 1.07996 * 126.28801 * 179.97438 * 10 8 7 33 33 H 1.09003 * 112.90580 * 191.25385 * 11 2 1 34 34 H 1.09000 * 113.61478 * 105.47246 * 12 11 2 35 35 H 1.08999 * 113.61507 * 334.56315 * 12 11 2 36 36 H 1.09006 * 113.61193 * 139.98475 * 13 12 11 37 37 H 0.96997 * 120.00019 * 25.00178 * 14 13 12 38 38 H 1.09004 * 109.46832 * 299.99380 * 17 15 14 39 39 H 1.08995 * 109.47478 * 59.99049 * 17 15 14 40 40 H 0.96999 * 120.00308 * 179.97438 * 22 21 19 41 41 H 1.09001 * 113.61424 * 25.44067 * 27 11 2 42 42 H 1.08995 * 113.61777 * 254.52829 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3541 1.1676 0.0466 5 6 1.4029 2.4433 -0.0567 6 6 1.9218 3.6935 -0.4619 7 7 0.9638 4.5747 -0.3769 8 7 -0.1943 3.9418 0.0884 9 1 -1.0504 4.3702 0.2450 10 6 0.0795 2.6418 0.2820 11 6 2.1974 -1.2688 0.0006 12 6 1.8952 -2.1550 -1.2193 13 6 1.9127 -3.3527 -0.2547 14 7 3.2395 -3.9504 -0.0853 15 6 3.3547 -5.2409 0.2859 16 8 2.3601 -5.9072 0.4802 17 6 4.7195 -5.8557 0.4607 18 16 4.5422 -7.5863 0.9600 19 6 6.2391 -8.0433 1.0879 20 1 7.0110 -7.3181 0.8767 21 6 6.5837 -9.3356 1.4590 22 7 5.6429 -10.2196 1.7159 23 14 8.3828 -9.8198 1.5954 24 1 9.2365 -8.6526 1.2576 25 1 8.6730 -10.2607 2.9833 26 1 8.6690 -10.9312 0.6530 27 6 1.5372 -2.3608 0.8588 28 1 -0.3634 0.1070 1.0221 29 1 -0.3633 0.8319 -0.6035 30 1 -0.3634 -0.9385 -0.4185 31 1 2.9335 3.8853 -0.7874 32 1 -0.6090 1.8897 0.6378 33 1 3.2623 -1.1438 0.1965 34 1 2.6996 -2.1748 -1.9545 35 1 0.9181 -1.9670 -1.6643 36 1 1.1380 -4.0911 -0.4614 37 1 4.0349 -3.4174 -0.2404 38 1 5.2651 -5.8031 -0.4815 39 1 5.2679 -5.3106 1.2290 40 1 5.8838 -11.1229 1.9750 41 1 0.4622 -2.2290 0.9819 42 1 2.0526 -2.5467 1.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281339335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:25 Heat of formation + Delta-G solvation = 43.743637 kcal Electronic energy + Delta-G solvation = -25573.746169 eV Core-core repulsion = 21683.371688 eV Total energy + Delta-G solvation = -3890.374481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.97259 -40.63339 -39.18557 -37.85810 -35.28271 -32.84298 -32.41879 -32.24522 -30.76233 -29.03058 -27.75913 -26.00278 -25.53220 -25.04279 -22.90251 -22.21580 -20.77839 -20.55177 -19.24349 -18.13820 -17.87979 -17.21091 -16.70683 -16.12157 -16.02011 -15.88448 -15.18896 -15.05932 -14.80761 -14.79606 -14.39944 -14.27250 -13.82182 -13.59717 -13.33363 -13.14559 -12.82009 -12.78956 -12.64676 -12.40208 -12.10262 -11.88803 -11.46963 -11.07303 -11.04225 -11.01142 -10.75100 -10.68421 -10.35994 -10.18952 -9.79638 -9.43438 -9.34313 -9.07190 -8.99547 -8.90177 -8.23120 -6.49404 -6.21206 -3.91583 0.98871 1.73605 2.15087 2.65622 2.98295 2.99983 3.04486 3.22665 3.28950 3.33674 3.68394 4.00538 4.10845 4.19383 4.21253 4.32902 4.51156 4.58062 4.66854 4.80027 4.83893 4.91684 5.05924 5.09778 5.12371 5.14282 5.33719 5.37324 5.56196 5.61370 5.69252 5.78056 5.87556 5.89825 5.93437 6.15590 6.20579 6.50950 6.64975 6.92660 7.06947 7.61054 7.68003 7.90002 8.36474 8.58505 9.24550 10.86276 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001771 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.202454 B =15810.176991 C =16455.546655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.601 5.601 3 C 0.592 3.408 4 O -0.539 6.539 5 C -0.285 4.285 6 C 0.109 3.891 7 N -0.298 5.298 8 N -0.463 5.463 9 H 0.444 0.556 10 C 0.091 3.909 11 C 0.123 3.877 12 C -0.158 4.158 13 C 0.130 3.870 14 N -0.722 5.722 15 C 0.536 3.464 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.163 4.163 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.195 0.805 32 H 0.198 0.802 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.400 0.600 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 27.850 -4.939 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.333 5.333 3 C 0.382 3.618 4 O -0.416 6.416 5 C -0.301 4.301 6 C -0.079 4.079 7 N -0.119 5.119 8 N -0.168 5.168 9 H 0.289 0.711 10 C -0.061 4.061 11 C 0.020 3.980 12 C -0.198 4.198 13 C 0.022 3.978 14 N -0.376 5.376 15 C 0.323 3.677 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.202 4.202 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.212 0.788 32 H 0.214 0.786 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.486 27.774 -4.709 32.640 hybrid contribution 2.282 0.067 0.053 2.284 sum -14.204 27.841 -4.657 31.600 Atomic orbital electron populations 1.22251 0.80367 1.04038 1.01524 1.47604 1.06508 1.05598 1.73600 1.17347 0.86580 0.82342 0.75568 1.90794 1.13352 1.87090 1.50353 1.20399 0.94274 0.95915 1.19477 1.24070 0.99120 0.88918 0.95820 1.77245 0.92135 1.21211 1.21288 1.46308 1.12714 1.06741 1.51074 0.71138 1.23936 0.97062 0.87630 0.97484 1.22782 0.98172 0.80538 0.96517 1.23843 1.03513 0.94905 0.97508 1.21525 0.87051 0.94016 0.95165 1.45741 1.07597 1.12213 1.72053 1.20336 0.91452 0.80735 0.75218 1.90697 1.39039 1.60893 1.48361 1.23542 0.96007 1.05794 1.05151 1.85373 1.10872 0.98569 1.88578 1.22918 0.91824 0.99675 1.53875 0.90825 1.24993 0.98652 0.95353 0.94597 1.70026 1.32439 1.04390 1.43474 0.86115 0.82882 0.78556 0.77941 1.19587 1.20574 1.20577 1.23947 1.01754 0.95071 0.99464 0.92103 0.90408 0.90028 0.78817 0.78588 0.85997 0.90121 0.88576 0.87328 0.76552 0.89097 0.89091 0.92249 0.88790 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 7.52 59.85 0.45 0.66 16 2 N -0.60 -4.57 3.08 -174.27 -0.54 -5.11 16 3 C 0.59 5.97 7.65 -12.52 -0.10 5.87 16 4 O -0.54 -7.54 16.46 5.28 0.09 -7.45 16 5 C -0.29 -2.24 5.80 -105.07 -0.61 -2.85 16 6 C 0.11 0.90 11.89 -16.98 -0.20 0.70 16 7 N -0.30 -2.38 12.63 30.86 0.39 -1.99 16 8 N -0.46 -2.06 7.29 30.85 0.22 -1.84 16 9 H 0.44 0.42 8.96 -182.71 -1.64 -1.22 16 10 C 0.09 0.39 9.76 -16.56 -0.16 0.23 16 11 C 0.12 1.07 4.09 -67.12 -0.27 0.79 16 12 C -0.16 -1.25 7.34 -25.92 -0.19 -1.44 16 13 C 0.13 1.37 4.32 -67.11 -0.29 1.08 16 14 N -0.72 -9.25 5.26 -53.01 -0.28 -9.53 16 15 C 0.54 9.70 7.85 -10.98 -0.09 9.62 16 16 O -0.52 -11.34 15.46 5.55 0.09 -11.25 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.16 -1.44 7.27 -25.92 -0.19 -1.63 16 28 H 0.06 0.12 7.39 -51.93 -0.38 -0.26 16 29 H 0.08 0.17 5.26 -51.92 -0.27 -0.11 16 30 H 0.08 0.23 6.11 -51.93 -0.32 -0.09 16 31 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.20 0.12 5.01 -52.49 -0.26 -0.14 16 33 H 0.12 1.28 7.22 -51.93 -0.37 0.91 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.60 7.01 -51.93 -0.36 0.24 16 36 H 0.11 1.31 7.47 -51.93 -0.39 0.92 16 37 H 0.40 4.19 8.70 -40.82 -0.36 3.83 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 0.65 6.58 -51.93 -0.34 0.31 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -39.21 365.95 -8.60 -47.82 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.36 Total: -0.58 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.23 Total: -2.78 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.53 Total: -43.87 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.21 -8.60 -47.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281339335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.559 kcal (2) G-P(sol) polarization free energy of solvation -39.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds