Wall clock time and date at job start Tue Mar 31 2020 20:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00474 * 2 1 4 4 O 1.21601 * 120.00500 * 177.46287 * 3 2 1 5 5 C 1.47433 * 119.99709 * 357.45611 * 3 2 1 6 6 C 1.41288 * 126.41256 * 200.43588 * 5 3 2 7 7 N 1.30446 * 108.02217 * 179.88079 * 6 5 3 8 8 N 1.39935 * 108.89531 * 0.38688 * 7 6 5 9 9 H 0.97009 * 125.75156 * 179.73058 * 8 7 6 10 10 C 1.34258 * 108.49255 * 359.75135 * 8 7 6 11 11 C 1.46499 * 119.99431 * 179.97438 * 2 1 3 12 12 C 1.53774 * 113.61467 * 60.00281 * 11 2 1 13 13 C 1.53788 * 87.07901 * 220.01467 * 12 11 2 14 14 N 1.46501 * 113.61510 * 270.88325 * 13 12 11 15 15 C 1.34773 * 119.99766 * 205.00439 * 14 13 12 16 16 O 1.21285 * 120.00238 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00045 * 180.02562 * 15 14 13 18 18 S 1.80993 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99916 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00047 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99750 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00420 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46829 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47409 * 119.99614 * 23 21 19 26 26 H 1.48502 * 109.47064 * 239.99513 * 23 21 19 27 27 C 1.53778 * 113.61600 * 322.49888 * 11 2 1 28 28 H 1.09006 * 109.47370 * 275.97477 * 1 2 3 29 29 H 1.09008 * 109.46914 * 35.96237 * 1 2 3 30 30 H 1.08994 * 109.47597 * 155.96716 * 1 2 3 31 31 H 1.08002 * 125.99008 * 0.02562 * 6 5 3 32 32 H 1.07996 * 126.28801 * 179.97438 * 10 8 7 33 33 H 1.09003 * 112.90580 * 191.25385 * 11 2 1 34 34 H 1.09000 * 113.61478 * 105.47246 * 12 11 2 35 35 H 1.08999 * 113.61507 * 334.56315 * 12 11 2 36 36 H 1.09006 * 113.61193 * 139.98475 * 13 12 11 37 37 H 0.96997 * 120.00019 * 25.00178 * 14 13 12 38 38 H 1.09004 * 109.46832 * 299.99380 * 17 15 14 39 39 H 1.08995 * 109.47478 * 59.99049 * 17 15 14 40 40 H 0.96999 * 120.00308 * 179.97438 * 22 21 19 41 41 H 1.09001 * 113.61424 * 25.44067 * 27 11 2 42 42 H 1.08995 * 113.61777 * 254.52829 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3541 1.1676 0.0466 5 6 1.4029 2.4433 -0.0567 6 6 1.9218 3.6935 -0.4619 7 7 0.9638 4.5747 -0.3769 8 7 -0.1943 3.9418 0.0884 9 1 -1.0504 4.3702 0.2450 10 6 0.0795 2.6418 0.2820 11 6 2.1974 -1.2688 0.0006 12 6 1.8952 -2.1550 -1.2193 13 6 1.9127 -3.3527 -0.2547 14 7 3.2395 -3.9504 -0.0853 15 6 3.3547 -5.2409 0.2859 16 8 2.3601 -5.9072 0.4802 17 6 4.7195 -5.8557 0.4607 18 16 4.5422 -7.5863 0.9600 19 6 6.2391 -8.0433 1.0879 20 1 7.0110 -7.3181 0.8767 21 6 6.5837 -9.3356 1.4590 22 7 5.6429 -10.2196 1.7159 23 14 8.3828 -9.8198 1.5954 24 1 9.2365 -8.6526 1.2576 25 1 8.6730 -10.2607 2.9833 26 1 8.6690 -10.9312 0.6530 27 6 1.5372 -2.3608 0.8588 28 1 -0.3634 0.1070 1.0221 29 1 -0.3633 0.8319 -0.6035 30 1 -0.3634 -0.9385 -0.4185 31 1 2.9335 3.8853 -0.7874 32 1 -0.6090 1.8897 0.6378 33 1 3.2623 -1.1438 0.1965 34 1 2.6996 -2.1748 -1.9545 35 1 0.9181 -1.9670 -1.6643 36 1 1.1380 -4.0911 -0.4614 37 1 4.0349 -3.4174 -0.2404 38 1 5.2651 -5.8031 -0.4815 39 1 5.2679 -5.3106 1.2290 40 1 5.8838 -11.1229 1.9750 41 1 0.4622 -2.2290 0.9819 42 1 2.0526 -2.5467 1.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281339335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:24 Heat of formation + Delta-G solvation = 12.964073 kcal Electronic energy + Delta-G solvation = -25575.080871 eV Core-core repulsion = 21683.371688 eV Total energy + Delta-G solvation = -3891.709183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47487 -41.46802 -40.25155 -38.87880 -36.04109 -34.58440 -33.99152 -32.72462 -31.40664 -30.44954 -28.17963 -27.67490 -26.70465 -25.84956 -23.44056 -22.84179 -22.04912 -21.10478 -20.07843 -19.81170 -18.63594 -18.17005 -17.60080 -17.11369 -17.00840 -16.87635 -16.57690 -16.34433 -15.93760 -15.62951 -15.40697 -15.18598 -14.85426 -14.62777 -14.36777 -14.11660 -13.97790 -13.74883 -13.47371 -13.17644 -13.15248 -12.93290 -12.90713 -12.75474 -12.55628 -11.94864 -11.87256 -11.71029 -11.46443 -11.15498 -10.96924 -10.91749 -10.83435 -10.27517 -10.07717 -9.88084 -9.54639 -8.65598 -8.34747 -6.12185 0.56623 1.13068 1.27330 1.41356 1.47015 1.58632 1.59689 1.77822 2.13279 2.24778 2.29228 2.36258 2.99453 3.31945 3.39090 3.54340 3.61737 3.83089 3.86833 3.97223 4.02635 4.17070 4.30089 4.31272 4.38380 4.52070 4.57848 4.59155 4.67272 4.73801 4.84610 4.84978 4.98276 5.04020 5.09140 5.32608 5.42781 5.51951 5.67627 6.20450 6.25104 6.39691 6.48561 6.54804 7.07002 7.23044 7.23978 8.74663 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.001771 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.202454 B =15810.176991 C =16455.546655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.596 5.596 3 C 0.587 3.413 4 O -0.594 6.594 5 C -0.316 4.316 6 C 0.094 3.906 7 N -0.325 5.325 8 N -0.449 5.449 9 H 0.461 0.539 10 C 0.125 3.875 11 C 0.123 3.877 12 C -0.138 4.138 13 C 0.115 3.885 14 N -0.700 5.700 15 C 0.540 3.460 16 O -0.560 6.560 17 C -0.133 4.133 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.150 4.150 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.190 0.810 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.122 0.878 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 29.519 -5.246 34.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.326 5.326 3 C 0.378 3.622 4 O -0.475 6.475 5 C -0.331 4.331 6 C -0.094 4.094 7 N -0.147 5.147 8 N -0.156 5.156 9 H 0.309 0.691 10 C -0.029 4.029 11 C 0.019 3.981 12 C -0.177 4.177 13 C 0.009 3.991 14 N -0.353 5.353 15 C 0.326 3.674 16 O -0.438 6.438 17 C -0.284 4.284 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.190 4.190 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.207 0.793 32 H 0.256 0.744 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.688 29.518 -5.036 34.778 hybrid contribution 2.499 -0.314 0.130 2.522 sum -15.189 29.204 -4.906 33.281 Atomic orbital electron populations 1.22651 0.77534 1.05698 1.03649 1.47633 1.08203 1.04321 1.72429 1.17698 0.86116 0.83520 0.74854 1.90758 1.15714 1.87893 1.53152 1.20323 0.95872 0.94804 1.22142 1.24155 0.99385 0.89598 0.96271 1.77188 0.93157 1.21929 1.22427 1.46354 1.12628 1.06891 1.49709 0.69098 1.24446 0.96015 0.87903 0.94514 1.22578 0.97314 0.81299 0.96866 1.23779 1.04924 0.92332 0.96709 1.21761 0.85203 0.94533 0.97646 1.45518 1.09580 1.10394 1.69840 1.19979 0.89944 0.82093 0.75379 1.90683 1.39895 1.62364 1.50879 1.23397 0.97963 1.00821 1.06242 1.85494 1.11906 1.05077 1.89414 1.23248 0.92007 1.00329 1.53941 0.90067 1.26102 1.03876 0.95212 0.93863 1.70179 1.35100 1.04920 1.44467 0.84920 0.76461 0.78509 0.78148 1.18227 1.19895 1.19843 1.23913 1.03275 0.93924 0.97859 0.89653 0.88590 0.88639 0.79289 0.74417 0.88323 0.90279 0.85926 0.88531 0.74987 0.87294 0.87459 0.91964 0.86003 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.12 7.52 127.77 0.96 1.08 16 2 N -0.60 -7.66 3.08 -823.53 -2.54 -10.20 16 3 C 0.59 11.37 7.65 86.67 0.66 12.03 16 4 O -0.59 -17.20 16.46 -4.03 -0.07 -17.27 16 5 C -0.32 -4.52 5.80 -20.15 -0.12 -4.64 16 6 C 0.09 1.55 11.89 85.65 1.02 2.57 16 7 N -0.33 -4.86 12.63 -56.28 -0.71 -5.57 16 8 N -0.45 -2.73 7.29 -56.32 -0.41 -3.14 16 9 H 0.46 -0.67 8.96 -213.42 -1.91 -2.59 16 10 C 0.12 0.62 9.76 84.27 0.82 1.45 16 11 C 0.12 1.94 4.09 45.51 0.19 2.12 16 12 C -0.14 -1.86 7.34 31.12 0.23 -1.63 16 13 C 0.11 2.25 4.32 45.52 0.20 2.44 16 14 N -0.70 -17.31 5.26 -440.01 -2.32 -19.63 16 15 C 0.54 19.52 7.85 87.66 0.69 20.21 16 16 O -0.56 -25.10 15.46 -3.05 -0.05 -25.15 16 17 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 18 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 19 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 23 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 C -0.15 -2.36 7.27 31.12 0.23 -2.13 16 28 H 0.09 -0.13 7.39 -2.38 -0.02 -0.15 16 29 H 0.10 -0.07 5.26 -2.38 -0.01 -0.08 16 30 H 0.10 0.05 6.11 -2.39 -0.01 0.04 16 31 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.24 -1.04 5.01 -2.91 -0.01 -1.05 16 33 H 0.10 2.06 7.22 -2.39 -0.02 2.04 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.06 7.01 -2.39 -0.02 1.04 16 36 H 0.10 2.22 7.47 -2.38 -0.02 2.20 16 37 H 0.41 8.16 8.70 -92.71 -0.81 7.36 16 38 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 39 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.12 1.24 6.58 -2.39 -0.02 1.22 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -90.45 365.95 -0.13 -90.59 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -1.62 Total: 10.20 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.42 Total: -0.92 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.69 Total: -94.18 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.11 Total: -42.42 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -90.45 -0.13 -90.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281339335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.554 kcal (2) G-P(sol) polarization free energy of solvation -90.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds