Wall clock time and date at job start Tue Mar 31 2020 20:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99916 * 2 1 4 4 C 1.53009 * 109.46855 * 93.39844 * 3 2 1 5 5 H 1.08998 * 112.77829 * 316.33762 * 4 3 2 6 6 C 1.53496 * 113.46801 * 87.12200 * 4 3 2 7 7 C 1.53232 * 83.43122 * 140.67472 * 6 4 3 8 8 N 1.47064 * 88.08396 * 334.10230 * 7 6 4 9 9 C 1.34782 * 136.05978 * 207.20051 * 8 7 6 10 10 O 1.21281 * 120.00371 * 174.53573 * 9 8 7 11 11 C 1.50701 * 119.99619 * 354.53188 * 9 8 7 12 12 S 1.81004 * 109.46844 * 179.97438 * 11 9 8 13 13 C 1.76202 * 100.00023 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99505 * 0.02562 * 13 12 11 15 15 C 1.38800 * 120.00149 * 179.97438 * 13 12 11 16 16 N 1.31627 * 119.99931 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99710 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47361 * 90.00006 * 17 15 13 19 19 H 1.48507 * 109.46633 * 209.99683 * 17 15 13 20 20 H 1.48498 * 109.47272 * 329.99250 * 17 15 13 21 21 C 1.34777 * 120.00206 * 180.02562 * 2 1 3 22 22 O 1.21568 * 119.99889 * 184.63635 * 21 2 1 23 23 C 1.47711 * 120.00023 * 4.63730 * 21 2 1 24 24 C 1.41496 * 126.51959 * 185.52543 * 23 21 2 25 25 C 1.35364 * 105.50284 * 180.02562 * 24 23 21 26 26 N 1.35035 * 107.23255 * 359.97438 * 25 24 23 27 27 H 0.96996 * 124.88618 * 180.02562 * 26 25 24 28 28 N 1.28472 * 110.22439 * 359.72825 * 26 25 24 29 29 H 1.08994 * 109.47291 * 354.83348 * 1 2 3 30 30 H 1.08996 * 109.47042 * 114.83640 * 1 2 3 31 31 H 1.08999 * 109.47006 * 234.83546 * 1 2 3 32 32 H 1.09002 * 109.47082 * 333.40483 * 3 2 1 33 33 H 1.08998 * 109.47397 * 213.39724 * 3 2 1 34 34 H 1.08999 * 114.20619 * 254.43994 * 6 4 3 35 35 H 1.09009 * 114.20515 * 27.06013 * 6 4 3 36 36 H 1.08999 * 113.38939 * 219.29426 * 7 6 4 37 37 H 1.08995 * 113.47051 * 88.92706 * 7 6 4 38 38 H 1.09000 * 109.46688 * 60.00343 * 11 9 8 39 39 H 1.08991 * 109.47221 * 300.00195 * 11 9 8 40 40 H 0.97000 * 119.99978 * 180.02562 * 16 15 13 41 41 H 1.07995 * 127.24778 * 359.97438 * 24 23 21 42 42 H 1.08006 * 126.38688 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5265 1.6676 1.4401 5 1 1.6872 1.5231 2.1203 6 6 3.8415 1.0667 1.9555 7 6 4.0090 2.4422 2.6098 8 7 3.1496 2.9951 1.5522 9 6 3.0019 4.1906 0.9477 10 8 2.2414 4.3063 0.0100 11 6 3.7817 5.3838 1.4370 12 16 3.3687 6.8291 0.4287 13 6 4.3918 8.0406 1.1971 14 1 5.0181 7.7667 2.0333 15 6 4.3936 9.3466 0.7271 16 7 5.1583 10.2514 1.3008 17 14 3.3109 9.8200 -0.7197 18 1 1.9847 10.2644 -0.2210 19 1 3.9513 10.9260 -1.4761 20 1 3.1362 8.6461 -1.6123 21 6 2.1389 -1.1672 -0.0005 22 8 3.3516 -1.1689 0.0846 23 6 1.4040 -2.4443 -0.1045 24 6 1.9561 -3.7436 -0.0092 25 6 0.9130 -4.5922 -0.1647 26 7 -0.1932 -3.8382 -0.3414 27 1 -1.0875 -4.1885 -0.4771 28 7 0.1084 -2.5901 -0.2978 29 1 -0.3633 1.0234 0.0925 30 1 -0.3633 -0.4316 -0.9326 31 1 -0.3633 -0.5919 0.8401 32 1 1.5833 2.0429 -0.4601 33 1 3.1222 1.1545 -0.5656 34 1 3.7116 0.2464 2.6615 35 1 4.5710 0.8516 1.1746 36 1 5.0326 2.8154 2.5766 37 1 3.5686 2.5062 3.6047 38 1 4.8490 5.1780 1.3565 39 1 3.5273 5.5819 2.4782 40 1 5.1593 11.1642 0.9725 41 1 2.9917 -4.0036 0.1527 42 1 0.9571 -5.6713 -0.1494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282023265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:19 Heat of formation + Delta-G solvation = 62.865147 kcal Electronic energy + Delta-G solvation = -26201.088966 eV Core-core repulsion = 22311.543656 eV Total energy + Delta-G solvation = -3889.545310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.04474 -40.63403 -39.36460 -37.47983 -35.70654 -32.41946 -32.39809 -31.29004 -30.77239 -29.03925 -28.15885 -26.82414 -25.58624 -24.60329 -22.82636 -22.09694 -21.88902 -19.58212 -18.93669 -18.72012 -17.69207 -17.12379 -16.72209 -16.49651 -16.22774 -15.73739 -15.23783 -14.89859 -14.77050 -14.20596 -14.14137 -14.07354 -13.84444 -13.44194 -13.30691 -13.12710 -12.82169 -12.69727 -12.61117 -12.52656 -12.06963 -11.75129 -11.52150 -11.23633 -11.19988 -10.99017 -10.69813 -10.57753 -10.30977 -9.84783 -9.83147 -9.63913 -9.39888 -8.98425 -8.93341 -8.53224 -8.47582 -6.89472 -6.26675 -3.98247 1.21784 1.72822 2.34400 2.55540 2.86621 2.98162 3.13554 3.23731 3.34810 3.52410 3.61544 4.01471 4.30971 4.35340 4.40646 4.61036 4.66161 4.83635 4.92222 5.01797 5.03197 5.10984 5.12376 5.20649 5.30221 5.32229 5.42233 5.46869 5.58982 5.65376 5.75121 5.78115 5.82582 5.92653 5.99379 6.07103 6.17057 6.36827 6.51420 7.11581 7.39618 7.84849 7.94801 7.96465 8.44199 8.46651 9.19426 10.82558 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.002132 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.280738 B =13128.834342 C =13725.122518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.112 3.888 4 C 0.120 3.880 5 H 0.090 0.910 6 C -0.138 4.138 7 C 0.098 3.902 8 N -0.646 5.646 9 C 0.561 3.439 10 O -0.519 6.519 11 C -0.115 4.115 12 S -0.142 6.142 13 C -0.520 4.520 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.600 3.400 22 O -0.524 6.524 23 C -0.010 4.010 24 C -0.179 4.179 25 C -0.016 4.016 26 N -0.386 5.386 27 H 0.446 0.554 28 N -0.255 5.255 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.270 0.730 41 H 0.163 0.837 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 -32.885 0.767 34.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.334 5.334 3 C -0.011 4.011 4 C 0.015 3.985 5 H 0.107 0.893 6 C -0.176 4.176 7 C -0.026 4.026 8 N -0.385 5.385 9 C 0.351 3.649 10 O -0.394 6.394 11 C -0.266 4.266 12 S 0.084 5.916 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.159 1.159 21 C 0.386 3.614 22 O -0.398 6.398 23 C -0.171 4.171 24 C -0.207 4.207 25 C -0.160 4.160 26 N -0.100 5.100 27 H 0.290 0.710 28 N -0.092 5.092 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.181 0.819 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.800 -31.630 -0.834 33.769 hybrid contribution 0.618 -0.347 0.772 1.048 sum -11.182 -31.976 -0.061 33.875 Atomic orbital electron populations 1.21895 0.78294 1.02560 1.02756 1.47660 1.07671 1.05422 1.72649 1.21844 0.98778 0.84199 0.96313 1.23021 0.97162 0.81051 0.97258 0.89272 1.23420 0.97246 0.95795 1.01107 1.22930 0.96062 0.91668 0.91906 1.49728 1.40684 1.08836 1.39207 1.19898 0.81890 0.81215 0.81887 1.90678 1.38128 1.83177 1.27390 1.23219 1.02872 0.96057 1.04445 1.84747 1.60214 1.01771 1.44844 1.22313 1.28697 0.95176 1.20600 0.89394 1.24714 0.94829 0.95174 0.96618 1.69939 1.37900 1.03120 1.40734 0.86730 0.81040 0.80550 0.83500 1.19236 1.19951 1.15901 1.16946 0.86176 0.81639 0.76684 1.90798 1.12713 1.86499 1.49808 1.21983 0.90090 0.95367 1.09659 1.21823 1.00782 0.90417 1.07674 1.22970 0.86584 0.99286 1.07189 1.43484 1.10925 1.03499 1.52135 0.70982 1.73797 1.16460 1.00120 1.18825 0.90677 0.91273 0.91689 0.88212 0.89253 0.89797 0.87945 0.90038 0.89938 0.88579 0.88635 0.91961 0.81913 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 9.07 59.85 0.54 1.32 16 2 N -0.60 -6.72 2.88 -182.74 -0.53 -7.24 16 3 C 0.11 1.44 5.12 -4.04 -0.02 1.42 16 4 C 0.12 1.46 4.28 -72.39 -0.31 1.15 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.14 -1.46 6.85 -26.36 -0.18 -1.64 16 7 C 0.10 1.06 8.41 -8.65 -0.07 0.99 16 8 N -0.65 -9.43 3.57 -177.63 -0.63 -10.07 16 9 C 0.56 10.63 8.02 -10.98 -0.09 10.55 16 10 O -0.52 -11.37 15.20 5.56 0.08 -11.29 16 11 C -0.12 -2.36 5.99 36.01 0.22 -2.14 16 12 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 13 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 14 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 17 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 21 C 0.60 7.20 7.65 -12.39 -0.09 7.11 16 22 O -0.52 -7.44 15.14 5.31 0.08 -7.36 16 23 C -0.01 -0.10 6.85 -82.77 -0.57 -0.67 16 24 C -0.18 -1.38 10.81 -39.37 -0.43 -1.81 16 25 C -0.02 -0.07 12.02 -17.17 -0.21 -0.28 16 26 N -0.39 -1.77 6.83 30.47 0.21 -1.56 16 27 H 0.45 0.35 8.96 -190.44 -1.71 -1.36 16 28 N -0.26 -2.05 8.96 33.42 0.30 -1.75 16 29 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 30 H 0.07 0.59 7.24 -51.93 -0.38 0.22 16 31 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 32 H 0.10 1.44 6.73 -51.93 -0.35 1.09 16 33 H 0.09 1.28 7.32 -51.93 -0.38 0.90 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.22 7.64 -51.92 -0.40 0.82 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 39 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.18 0.08 8.06 -52.48 -0.42 -0.34 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -37.39 368.75 -8.81 -46.20 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.96 Total: -1.87 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.99 Total: 3.79 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.12 Total: -46.69 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.39 -8.81 -46.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282023265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.070 kcal (2) G-P(sol) polarization free energy of solvation -37.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds