Wall clock time and date at job start Tue Mar 31 2020 20:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47561 * 2 1 4 4 C 1.46508 * 119.99584 * 89.99824 * 3 2 1 5 5 C 1.53001 * 109.47159 * 270.00090 * 4 3 2 6 6 N 1.46498 * 109.46777 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99780 * 180.02562 * 6 5 4 8 8 O 1.21515 * 120.00160 * 359.97438 * 7 6 5 9 9 C 1.48148 * 120.00017 * 180.02562 * 7 6 5 10 10 C 1.39443 * 120.09698 * 180.02562 * 9 7 6 11 11 N 1.32079 * 119.87260 * 179.97438 * 10 9 7 12 12 C 1.32142 * 120.07304 * 359.97438 * 11 10 9 13 13 C 1.38724 * 120.19178 * 0.28422 * 12 11 10 14 14 N 1.31797 * 120.12804 * 359.43155 * 13 12 11 15 15 C 1.34774 * 120.00425 * 270.00258 * 3 2 1 16 16 O 1.21279 * 120.00381 * 179.97438 * 15 3 2 17 17 C 1.50699 * 119.99775 * 359.97438 * 15 3 2 18 18 S 1.80995 * 109.47205 * 179.97438 * 17 15 3 19 19 C 1.76197 * 100.00306 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00128 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00516 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99703 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00338 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47015 * 60.00157 * 23 21 19 25 25 H 1.48497 * 109.47406 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47393 * 300.00157 * 23 21 19 27 27 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46873 * 299.99828 * 1 2 3 29 29 H 1.08997 * 109.47147 * 59.99642 * 1 2 3 30 30 H 1.09004 * 109.46873 * 240.00172 * 2 1 3 31 31 H 1.09004 * 109.46861 * 120.00617 * 2 1 3 32 32 H 1.09001 * 109.46861 * 150.00427 * 4 3 2 33 33 H 1.08995 * 109.47058 * 30.00846 * 4 3 2 34 34 H 1.09001 * 109.46959 * 60.00397 * 5 4 3 35 35 H 1.09002 * 109.46922 * 300.00350 * 5 4 3 36 36 H 0.97003 * 120.00291 * 359.97438 * 6 5 4 37 37 H 1.07999 * 120.06715 * 359.94846 * 10 9 7 38 38 H 1.08002 * 119.90049 * 180.02562 * 12 11 10 39 39 H 1.08008 * 119.93444 * 179.69733 * 13 12 11 40 40 H 1.09000 * 109.47246 * 300.00248 * 17 15 3 41 41 H 1.09005 * 109.47358 * 59.99987 * 17 15 3 42 42 H 0.97003 * 120.00295 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 0.9876 2.7930 1.7105 6 7 1.2320 3.4840 2.9790 7 6 0.2438 4.1904 3.5628 8 8 -0.8497 4.2546 3.0368 9 6 0.4911 4.8896 4.8453 10 6 -0.5300 5.6207 5.4513 11 7 -0.3048 6.2419 6.5949 12 6 0.8856 6.1706 7.1641 13 6 1.9051 5.4486 6.5609 14 7 1.6873 4.8210 5.4226 15 6 2.2431 2.0165 -1.1671 16 8 2.6470 3.1601 -1.1671 17 6 1.9924 1.3060 -2.4722 18 16 2.3836 2.4152 -3.8479 19 6 2.0102 1.3593 -5.2081 20 1 1.6551 0.3549 -5.0305 21 6 2.1714 1.8186 -6.5080 22 7 2.6036 3.0429 -6.7246 23 14 1.7762 0.6989 -7.9500 24 1 0.3484 0.2953 -7.8866 25 1 2.0308 1.4215 -9.2221 26 1 2.6357 -0.5105 -7.8878 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 3.0645 2.7983 1.1385 33 1 2.5507 1.3450 2.0284 34 1 0.1857 2.0663 1.8408 35 1 0.6996 3.5197 0.9508 36 1 2.1049 3.4324 3.3991 37 1 -1.5031 5.6791 4.9864 38 1 1.0666 6.6793 8.0994 39 1 2.8779 5.3971 7.0273 40 1 2.6228 0.4187 -2.5298 41 1 0.9445 1.0115 -2.5302 42 1 2.7160 3.3640 -7.6330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284594490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:01 Heat of formation + Delta-G solvation = -17.448704 kcal Electronic energy + Delta-G solvation = -25546.301528 eV Core-core repulsion = 21653.273549 eV Total energy + Delta-G solvation = -3893.027980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72589 -39.94690 -39.35142 -36.25892 -35.23709 -34.68619 -32.43112 -32.32593 -31.26170 -29.87983 -28.17192 -25.87714 -25.46864 -25.00886 -23.36801 -23.04822 -21.33660 -19.36629 -18.53496 -18.10241 -17.72556 -17.30158 -16.85463 -16.29612 -15.94338 -15.68596 -15.56622 -15.10642 -14.86996 -14.80471 -14.26554 -13.94004 -13.88015 -13.68263 -13.37607 -13.32479 -13.06252 -12.57907 -12.37517 -12.26519 -11.90465 -11.87359 -11.83871 -11.52294 -11.07310 -11.04494 -11.01189 -10.77075 -10.75423 -10.01821 -9.82329 -9.69717 -9.43365 -9.34667 -9.06035 -8.72180 -8.23719 -6.50680 -6.21589 -3.92492 -0.13840 0.48017 2.31739 2.45147 2.97771 3.00557 3.23403 3.25214 3.28147 3.28997 3.44775 3.60475 3.65345 3.89397 4.20083 4.30185 4.58205 4.61168 4.65460 4.75477 4.86773 4.97186 5.01691 5.13216 5.18449 5.19784 5.33565 5.51641 5.60042 5.69338 5.74089 5.76288 5.85636 5.90412 6.03231 6.05591 6.22550 6.52531 6.57418 6.98058 7.20168 7.43671 7.59086 7.77507 8.34730 8.48398 9.23501 10.85750 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.001946 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.565118 B =14385.404944 C =14756.944045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.099 3.901 6 N -0.703 5.703 7 C 0.574 3.426 8 O -0.523 6.523 9 C 0.032 3.968 10 C 0.111 3.889 11 N -0.439 5.439 12 C 0.072 3.928 13 C 0.051 3.949 14 N -0.413 5.413 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.411 0.589 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -2.048 28.829 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.026 4.026 6 N -0.355 5.355 7 C 0.357 3.643 8 O -0.398 6.398 9 C -0.110 4.110 10 C -0.049 4.049 11 N -0.154 5.154 12 C -0.089 4.089 13 C -0.112 4.112 14 N -0.131 5.131 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.246 0.754 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.770 -0.200 28.221 28.277 hybrid contribution -0.279 -2.076 -0.608 2.181 sum -2.049 -2.276 27.613 27.782 Atomic orbital electron populations 1.22325 0.95867 1.02385 1.02953 1.21603 0.94585 0.82073 1.03415 1.47899 1.68133 1.14337 1.05023 1.21439 0.96843 0.97327 0.85925 1.22007 0.98872 0.96911 0.84766 1.45665 1.15123 1.50767 1.23959 1.17591 0.84601 0.79028 0.83065 1.90847 1.23658 1.61640 1.63639 1.22209 0.91685 0.99837 0.97228 1.23894 1.00540 0.89958 0.90480 1.68660 1.21731 1.16396 1.08563 1.24161 0.89250 0.95264 1.00233 1.23884 1.01346 0.94068 0.91881 1.68334 1.20237 1.15683 1.08815 1.20412 0.76216 0.86499 0.84604 1.90709 1.43637 1.17387 1.86733 1.23584 1.04900 1.04536 0.97065 1.85408 1.86832 1.17890 0.93345 1.22810 1.51934 1.01441 0.92190 0.90974 1.24990 0.94657 0.95545 0.98373 1.70006 1.42849 1.15615 1.21775 0.86228 0.78963 0.80022 0.80311 1.19924 1.20815 1.19946 0.91469 0.92311 0.91723 0.89643 0.90508 0.89042 0.90127 0.90675 0.90193 0.75360 0.79873 0.80564 0.80384 0.89195 0.89076 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.11 1.05 5.97 -4.04 -0.02 1.03 16 3 N -0.62 -8.09 2.47 -173.69 -0.43 -8.52 16 4 C 0.11 1.17 5.56 -4.04 -0.02 1.15 16 5 C 0.10 1.14 6.00 -4.04 -0.02 1.12 16 6 N -0.70 -7.19 5.55 -61.15 -0.34 -7.53 16 7 C 0.57 6.75 7.81 -12.19 -0.10 6.65 16 8 O -0.52 -7.75 16.35 5.35 0.09 -7.67 16 9 C 0.03 0.31 6.75 -82.84 -0.56 -0.25 16 10 C 0.11 1.01 10.77 -17.00 -0.18 0.83 16 11 N -0.44 -3.66 10.49 -12.71 -0.13 -3.79 16 12 C 0.07 0.38 11.23 -17.24 -0.19 0.18 16 13 C 0.05 0.26 11.22 -17.39 -0.20 0.07 16 14 N -0.41 -3.35 9.71 -9.61 -0.09 -3.45 16 15 C 0.53 9.81 7.69 -10.99 -0.08 9.72 16 16 O -0.51 -11.35 15.44 5.56 0.09 -11.26 16 17 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 29 H 0.06 0.76 7.22 -51.93 -0.38 0.39 16 30 H 0.09 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 33 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 34 H 0.08 0.84 6.26 -51.93 -0.33 0.52 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.41 3.36 7.82 -40.82 -0.32 3.04 16 37 H 0.18 1.55 7.65 -52.49 -0.40 1.15 16 38 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.18 0.27 8.06 -52.48 -0.42 -0.16 16 40 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 41 H 0.09 1.70 7.19 -51.91 -0.37 1.32 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -37.31 375.61 -7.58 -44.88 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.28 Total: 1.14 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.63 Total: 3.48 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.26 Total: -48.69 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.17 Total: -18.93 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.31 -7.58 -44.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284594490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.434 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds