Wall clock time and date at job start Tue Mar 31 2020 20:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00211 * 2 1 4 4 C 1.52999 * 109.47485 * 270.00109 * 3 2 1 5 5 N 1.46496 * 109.47485 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99761 * 269.72312 * 5 4 3 7 7 C 1.34776 * 120.00117 * 89.99731 * 5 4 3 8 8 O 1.21478 * 120.00093 * 356.96973 * 7 5 4 9 9 C 1.48452 * 120.00184 * 176.96422 * 7 5 4 10 10 C 1.39541 * 120.55166 * 186.71539 * 9 7 5 11 11 C 1.38763 * 118.26057 * 179.97438 * 10 9 7 12 12 N 1.32202 * 119.14883 * 359.97438 * 11 10 9 13 13 C 1.31879 * 121.03806 * 0.02562 * 12 11 10 14 14 N 1.31582 * 121.91733 * 359.72966 * 13 12 11 15 15 C 1.34775 * 119.99604 * 180.02562 * 2 1 3 16 16 O 1.21291 * 119.99667 * 180.02562 * 15 2 1 17 17 C 1.50698 * 120.00397 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47206 * 180.02562 * 17 15 2 19 19 C 1.76202 * 99.99891 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00157 * 359.97438 * 19 18 17 21 21 C 1.38790 * 119.99939 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00420 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47151 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47277 * 119.99370 * 23 21 19 26 26 H 1.48498 * 109.47244 * 239.99675 * 23 21 19 27 27 H 1.09004 * 109.47294 * 89.99511 * 1 2 3 28 28 H 1.08992 * 109.47441 * 210.00145 * 1 2 3 29 29 H 1.08999 * 109.47036 * 330.00374 * 1 2 3 30 30 H 1.08999 * 109.47496 * 149.99535 * 3 2 1 31 31 H 1.09000 * 109.47386 * 29.99814 * 3 2 1 32 32 H 1.08999 * 109.47222 * 59.99258 * 4 3 2 33 33 H 1.09004 * 109.47015 * 300.00381 * 4 3 2 34 34 H 1.08999 * 109.46981 * 96.03558 * 6 5 4 35 35 H 1.09000 * 109.46611 * 216.03148 * 6 5 4 36 36 H 1.08995 * 109.47158 * 336.02857 * 6 5 4 37 37 H 1.07998 * 120.86784 * 0.02562 * 10 9 7 38 38 H 1.08006 * 120.41985 * 180.02562 * 11 10 9 39 39 H 1.08005 * 119.03948 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46758 * 300.00153 * 17 15 2 41 41 H 1.08997 * 109.47193 * 59.99692 * 17 15 2 42 42 H 0.96997 * 120.00333 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 2.4515 4.2478 -1.4488 7 6 4.5323 2.9799 -1.4423 8 8 5.1401 1.9296 -1.3865 9 6 5.2741 4.2640 -1.5103 10 6 6.6623 4.2746 -1.6514 11 6 7.3073 5.5018 -1.7105 12 7 6.5911 6.6102 -1.6324 13 6 5.2798 6.5645 -1.4994 14 7 4.6256 5.4242 -1.4437 15 6 2.1388 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3853 -2.4723 -0.0005 18 16 2.5615 -3.8481 -0.0005 19 6 1.4413 -5.2082 -0.0013 20 1 0.3760 -5.0305 -0.0012 21 6 1.9280 -6.5080 -0.0010 22 7 3.2263 -6.7247 -0.0006 23 14 0.7405 -7.9500 -0.0011 24 1 -0.6550 -7.4421 -0.0021 25 1 0.9664 -8.7773 -1.2135 26 1 0.9659 -8.7770 1.2115 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1384 0.5139 31 1 1.6085 2.0284 0.5138 32 1 1.5002 1.8407 -1.9563 33 1 3.0416 0.9507 -1.9564 34 1 2.3589 4.6189 -0.4281 35 1 2.9919 4.9767 -2.0528 36 1 1.4585 4.0915 -1.8701 37 1 7.2200 3.3519 -1.7137 38 1 8.3808 5.5507 -1.8198 39 1 4.7263 7.4900 -1.4391 40 1 0.7590 -2.5302 0.8897 41 1 0.7583 -2.5298 -0.8902 42 1 3.5664 -7.6331 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285352466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:01 Heat of formation + Delta-G solvation = -14.716453 kcal Electronic energy + Delta-G solvation = -25928.223772 eV Core-core repulsion = 22035.314272 eV Total energy + Delta-G solvation = -3892.909500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.38975 -41.05839 -40.41983 -37.42700 -36.39623 -34.95519 -34.59441 -33.19077 -32.17389 -29.95904 -27.87629 -27.70763 -27.65037 -26.22965 -25.43803 -24.21175 -21.44103 -20.68706 -19.56695 -19.04439 -18.59903 -18.09975 -17.53439 -17.15038 -16.91132 -16.85957 -16.61534 -16.48933 -16.33430 -15.83541 -15.43478 -14.90639 -14.83518 -14.72838 -14.47722 -14.37339 -14.08306 -13.97835 -13.57502 -13.28374 -13.24196 -13.16269 -13.02085 -12.91807 -12.60616 -12.11738 -11.97432 -11.78660 -11.69815 -11.65550 -11.16736 -10.93356 -10.88258 -10.26608 -10.24022 -10.11415 -9.51108 -8.69443 -8.35108 -6.14386 -0.66883 -0.14074 1.22488 1.40953 1.41325 1.50573 1.56012 1.58698 1.67345 2.18919 2.26928 2.69479 2.76402 2.98875 3.17425 3.25919 3.34970 3.65249 3.69146 3.91691 3.97001 4.00648 4.19779 4.24540 4.37283 4.40722 4.46878 4.48132 4.56608 4.68016 4.71656 4.82985 4.87986 4.96777 5.07605 5.27889 5.41043 5.44942 5.56953 5.68608 6.10998 6.19259 6.24583 6.77819 6.91704 7.05598 7.13939 8.74578 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.002073 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.258934 B =13503.883810 C =14434.207961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.111 3.889 4 C 0.105 3.895 5 N -0.588 5.588 6 C 0.070 3.930 7 C 0.549 3.451 8 O -0.561 6.561 9 C 0.119 3.881 10 C -0.179 4.179 11 C 0.164 3.836 12 N -0.519 5.519 13 C 0.289 3.711 14 N -0.488 5.488 15 C 0.524 3.476 16 O -0.562 6.562 17 C -0.119 4.119 18 S -0.162 6.162 19 C -0.542 4.542 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.210 0.790 39 H 0.240 0.760 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 31.722 -3.720 32.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.013 4.013 4 C -0.019 4.019 5 N -0.319 5.319 6 C -0.071 4.071 7 C 0.335 3.665 8 O -0.438 6.438 9 C -0.028 4.028 10 C -0.202 4.202 11 C -0.003 4.003 12 N -0.233 5.233 13 C 0.002 3.998 14 N -0.206 5.206 15 C 0.312 3.688 16 O -0.440 6.440 17 C -0.270 4.270 18 S 0.065 5.935 19 C -0.690 4.690 20 H 0.103 0.897 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.824 3.176 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.173 0.827 38 H 0.227 0.773 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.031 31.898 -3.632 32.356 hybrid contribution -0.887 -2.126 0.019 2.303 sum -4.918 29.773 -3.612 30.392 Atomic orbital electron populations 1.22194 0.76015 1.05148 1.03788 1.47781 1.08804 1.04099 1.73746 1.21743 0.97349 0.85095 0.97112 1.21897 0.97562 0.84872 0.97524 1.47797 1.04699 1.09092 1.70292 1.22694 0.97203 0.83129 1.04086 1.18449 0.83128 0.87476 0.77412 1.90914 1.68879 1.33260 1.50786 1.21398 0.92559 0.92391 0.96417 1.23144 0.94800 1.02776 0.99493 1.23896 1.02669 0.85727 0.88023 1.68473 1.09622 1.32741 1.12416 1.25935 0.87828 0.96881 0.89176 1.68845 1.39636 0.98335 1.13747 1.20321 0.87336 0.85795 0.75376 1.90748 1.16005 1.87442 1.49819 1.23355 1.02507 0.94574 1.06588 1.85743 1.13050 0.97698 1.97038 1.23221 0.94600 0.92438 1.58713 0.89651 1.26198 0.97665 1.01852 0.93758 1.70210 1.14252 1.22400 1.48112 0.84857 0.78184 0.76556 0.78029 1.17705 1.19978 1.19961 0.90583 0.90684 0.87506 0.93885 0.86271 0.86152 0.93669 0.91420 0.87141 0.89251 0.82671 0.77302 0.74461 0.87119 0.87162 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.28 127.77 1.31 2.42 16 2 N -0.61 -16.62 2.87 -846.78 -2.43 -19.06 16 3 C 0.11 2.76 5.77 86.38 0.50 3.26 16 4 C 0.11 2.47 5.75 86.38 0.50 2.97 16 5 N -0.59 -12.50 2.87 -849.52 -2.44 -14.94 16 6 C 0.07 0.81 9.45 127.77 1.21 2.01 16 7 C 0.55 15.11 7.67 86.97 0.67 15.78 16 8 O -0.56 -21.48 16.05 -3.65 -0.06 -21.53 16 9 C 0.12 2.46 6.66 41.99 0.28 2.74 16 10 C -0.18 -3.18 9.72 22.71 0.22 -2.96 16 11 C 0.16 2.00 11.31 84.76 0.96 2.96 16 12 N -0.52 -6.80 10.42 -200.09 -2.09 -8.88 16 13 C 0.29 3.13 12.27 180.92 2.22 5.35 16 14 N -0.49 -7.22 6.20 -189.15 -1.17 -8.40 16 15 C 0.52 21.10 7.69 87.66 0.67 21.77 16 16 O -0.56 -29.11 15.44 -3.06 -0.05 -29.16 16 17 C -0.12 -4.93 4.71 71.24 0.34 -4.60 16 18 S -0.16 -9.42 20.57 -56.49 -1.16 -10.59 16 19 C -0.54 -31.54 9.50 67.95 0.65 -30.90 16 20 H 0.09 4.57 7.80 -2.91 -0.02 4.55 16 21 C 0.01 0.56 5.49 84.86 0.47 1.03 16 22 N -0.91 -57.53 13.22 21.65 0.29 -57.25 16 23 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 24 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 29 H 0.11 0.93 7.89 -2.39 -0.02 0.92 16 30 H 0.04 1.48 7.42 -2.39 -0.02 1.47 16 31 H 0.12 1.89 7.89 -2.39 -0.02 1.87 16 32 H 0.12 1.85 7.85 -2.39 -0.02 1.83 16 33 H 0.04 1.52 7.47 -2.38 -0.02 1.50 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 1.30 5.17 -3.06 -0.02 1.28 16 36 H 0.09 0.58 7.82 -2.39 -0.02 0.56 16 37 H 0.16 2.92 7.75 -2.91 -0.02 2.89 16 38 H 0.21 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.24 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.11 4.08 7.40 -2.39 -0.02 4.06 16 41 H 0.11 4.07 8.11 -2.40 -0.02 4.05 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -93.03 374.54 3.94 -89.10 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.04 Total: 12.65 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 9.98 Total: 21.82 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -7.85 Total: -108.52 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.11 Total: -50.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.16 Total: -10.59 kcal Total: -93.03 3.94 -89.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285352466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.379 kcal (2) G-P(sol) polarization free energy of solvation -93.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds