Wall clock time and date at job start Tue Mar 31 2020 20:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34772 * 119.99824 * 2 1 4 4 O 1.21288 * 120.00326 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.00183 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.47220 * 179.97438 * 5 3 2 7 7 C 1.76200 * 100.00330 * 180.02562 * 6 5 3 8 8 H 1.08008 * 119.99569 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00550 * 180.02562 * 7 6 5 10 10 N 1.31637 * 119.99487 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00223 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47235 * 119.99972 * 11 9 7 14 14 H 1.48499 * 109.47432 * 240.00275 * 11 9 7 15 15 C 1.46491 * 120.00161 * 179.97438 * 2 1 3 16 16 C 1.53954 * 113.74248 * 60.00078 * 15 2 1 17 17 N 1.47581 * 86.11703 * 269.26101 * 16 15 2 18 18 C 1.34771 * 134.49381 * 155.35430 * 17 16 15 19 19 O 1.21685 * 120.00001 * 354.62928 * 18 17 16 20 20 C 1.46766 * 120.00071 * 174.62617 * 18 17 16 21 21 C 1.36659 * 126.84710 * 4.82523 * 20 18 17 22 22 N 1.33312 * 107.78668 * 179.89435 * 21 20 18 23 23 C 1.30855 * 109.68665 * 0.38087 * 22 21 20 24 24 N 1.34490 * 109.16170 * 359.75881 * 23 22 21 25 25 C 1.46501 * 126.46975 * 180.02562 * 24 23 22 26 26 C 1.47584 * 91.01318 * 335.35947 * 17 16 15 27 27 H 1.09000 * 109.46879 * 269.99979 * 1 2 3 28 28 H 1.08994 * 109.47096 * 29.99706 * 1 2 3 29 29 H 1.08998 * 109.46704 * 150.00071 * 1 2 3 30 30 H 1.08993 * 109.46825 * 300.00368 * 5 3 2 31 31 H 1.08997 * 109.46780 * 60.00139 * 5 3 2 32 32 H 0.97004 * 119.99126 * 180.02562 * 10 9 7 33 33 H 1.08997 * 113.01879 * 191.66378 * 15 2 1 34 34 H 1.08997 * 113.76665 * 23.56109 * 16 15 2 35 35 H 1.08994 * 113.76910 * 154.95915 * 16 15 2 36 36 H 1.08003 * 126.10567 * 359.97438 * 21 20 18 37 37 H 1.08005 * 125.41751 * 179.79037 * 23 22 21 38 38 H 1.08995 * 109.47467 * 274.87004 * 25 24 23 39 39 H 1.09003 * 109.47102 * 34.87369 * 25 24 23 40 40 H 1.09005 * 109.46768 * 154.86672 * 25 24 23 41 41 H 1.08996 * 113.76903 * 270.33477 * 26 17 16 42 42 H 1.09001 * 113.76687 * 138.94724 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1673 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5615 3.8481 0.0003 7 6 1.4415 5.2083 0.0002 8 1 0.3761 5.0305 0.0001 9 6 1.9281 6.5081 0.0003 10 7 3.2266 6.7247 -0.0001 11 14 0.7407 7.9500 -0.0005 12 1 -0.6547 7.4421 -0.0005 13 1 0.9658 8.7774 1.2120 14 1 0.9669 8.7770 -1.2130 15 6 2.1976 -1.2686 0.0006 16 6 1.8973 -2.1583 -1.2195 17 7 0.8246 -2.7509 -0.3972 18 6 -0.3331 -3.3850 -0.6693 19 8 -0.7195 -3.4791 -1.8193 20 6 -1.1277 -3.9620 0.4214 21 6 -0.8767 -3.8602 1.7609 22 7 -1.8367 -4.5224 2.4066 23 6 -2.6719 -5.0410 1.5431 24 7 -2.2751 -4.7214 0.2984 25 6 -2.9354 -5.1056 -0.9517 26 6 1.5287 -2.3702 0.8427 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8907 31 1 0.7584 2.5302 0.8892 32 1 3.5666 7.6332 0.0003 33 1 3.2615 -1.1464 0.2033 34 1 1.5328 -1.6069 -2.0861 35 1 2.6995 -2.8547 -1.4634 36 1 -0.0491 -3.3356 2.2152 37 1 -3.5418 -5.6314 1.7905 38 1 -2.5930 -6.0952 -1.2542 39 1 -4.0148 -5.1248 -0.8015 40 1 -2.6896 -4.3825 -1.7294 41 1 2.2226 -3.1289 1.2045 42 1 0.8699 -1.9881 1.6224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285997005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:12 Heat of formation + Delta-G solvation = 53.901946 kcal Electronic energy + Delta-G solvation = -26557.442619 eV Core-core repulsion = 22667.508636 eV Total energy + Delta-G solvation = -3889.933983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.62905 -41.01064 -39.05676 -37.79573 -34.67728 -34.34244 -32.44623 -31.43115 -29.74428 -28.47205 -27.57829 -26.83994 -26.47409 -25.51307 -23.55303 -21.88865 -21.55427 -19.91600 -18.87629 -17.96970 -17.66403 -17.19385 -16.92859 -16.39596 -16.10282 -15.78870 -15.50498 -15.22823 -14.81917 -14.57472 -14.17776 -14.08660 -13.64701 -13.56173 -13.50380 -13.30069 -13.15248 -13.07727 -12.68078 -12.56672 -12.36769 -12.05727 -11.95236 -11.45945 -11.08211 -11.03865 -10.77776 -10.68814 -10.19675 -10.13064 -9.82374 -9.57133 -9.20543 -9.09069 -8.96396 -8.66869 -8.25961 -6.52813 -6.23782 -3.94505 0.90104 1.91555 2.44129 2.60838 2.73321 2.88599 2.97238 3.20665 3.23849 3.29889 3.53474 3.84958 4.08517 4.17838 4.18826 4.34853 4.51386 4.61049 4.72563 4.82980 4.86646 4.94428 5.00214 5.06552 5.11139 5.11814 5.15756 5.31222 5.33531 5.42056 5.51208 5.65122 5.70813 5.74287 5.85886 6.05927 6.10023 6.48601 6.58855 7.17821 7.38706 7.44417 7.58376 7.71673 8.33612 8.41915 9.21980 10.83690 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002333 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.085512 B =11998.982690 C =12591.259189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.605 5.605 3 C 0.538 3.462 4 O -0.511 6.511 5 C -0.150 4.150 6 S -0.060 6.060 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.116 3.884 16 C 0.101 3.899 17 N -0.632 5.632 18 C 0.617 3.383 19 O -0.546 6.546 20 C -0.085 4.085 21 C 0.036 3.964 22 N -0.497 5.497 23 C 0.206 3.794 24 N -0.428 5.428 25 C 0.062 3.938 26 C 0.084 3.916 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.181 0.819 37 H 0.213 0.787 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 -25.887 0.913 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.327 3.673 4 O -0.384 6.384 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.206 1.206 15 C 0.009 3.991 16 C -0.022 4.022 17 N -0.368 5.368 18 C 0.407 3.593 19 O -0.425 6.425 20 C -0.201 4.201 21 C -0.118 4.118 22 N -0.214 5.214 23 C -0.076 4.076 24 N -0.109 5.109 25 C -0.079 4.079 26 C -0.039 4.039 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.197 0.803 37 H 0.230 0.770 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.264 -26.012 0.917 27.627 hybrid contribution -2.395 0.783 -0.827 2.651 sum -11.659 -25.229 0.090 27.793 Atomic orbital electron populations 1.21848 0.79378 1.03570 1.01896 1.47550 1.06717 1.04348 1.75429 1.20408 0.87921 0.84345 0.74635 1.90702 1.13621 1.86688 1.47434 1.23561 1.04625 0.96953 1.04903 1.85379 1.07950 0.93328 1.96716 1.22889 0.94318 0.92148 1.58884 0.90886 1.24993 0.95689 0.98398 0.94516 1.70031 1.11715 1.21588 1.46913 0.86113 0.80347 0.81104 0.77914 1.19619 1.20548 1.20563 1.22362 0.98741 0.83355 0.94617 1.23799 0.87589 0.93816 0.97032 1.49740 1.18811 1.57146 1.11085 1.16326 0.79764 0.76667 0.86499 1.90796 1.70114 1.59874 1.21679 1.20670 0.94748 1.08471 0.96255 1.22953 0.99459 1.00617 0.88790 1.70193 1.04775 1.13613 1.32854 1.25192 1.01474 1.02268 0.78657 1.45282 1.19536 1.37195 1.08848 1.22360 0.97809 1.03271 0.84509 1.23943 0.94686 0.95715 0.89554 0.92617 0.90494 0.91120 0.89153 0.89091 0.92221 0.85077 0.89121 0.88110 0.80253 0.77036 0.90157 0.89296 0.87322 0.87576 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.19 59.85 0.55 1.39 16 2 N -0.61 -7.76 3.09 -175.73 -0.54 -8.31 16 3 C 0.54 9.51 7.69 -10.98 -0.08 9.42 16 4 O -0.51 -10.73 15.35 5.55 0.09 -10.64 16 5 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 6 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 7 C -0.53 -15.00 9.50 30.94 0.29 -14.71 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 10 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 11 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.12 1.13 4.51 -70.14 -0.32 0.82 16 16 C 0.10 0.91 8.32 -2.97 -0.02 0.89 16 17 N -0.63 -5.88 2.22 -180.04 -0.40 -6.28 16 18 C 0.62 6.94 7.03 -12.82 -0.09 6.85 16 19 O -0.55 -7.60 15.50 5.20 0.08 -7.52 16 20 C -0.08 -0.86 6.91 -82.14 -0.57 -1.43 16 21 C 0.04 0.35 11.01 -17.48 -0.19 0.16 16 22 N -0.50 -5.12 11.20 -14.43 -0.16 -5.28 16 23 C 0.21 1.58 12.52 -90.58 -1.13 0.45 16 24 N -0.43 -3.62 3.17 -121.97 -0.39 -4.01 16 25 C 0.06 0.36 10.86 59.85 0.65 1.01 16 26 C 0.08 0.60 6.32 -2.97 -0.02 0.58 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 29 H 0.07 0.78 5.32 -51.93 -0.28 0.50 16 30 H 0.09 1.67 7.40 -51.92 -0.38 1.28 16 31 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.13 1.34 7.25 -51.93 -0.38 0.96 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.18 1.37 5.16 -52.48 -0.27 1.10 16 37 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.11 0.88 6.15 -51.93 -0.32 0.56 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.64 6.12 -51.93 -0.32 0.32 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -37.63 364.23 -8.40 -46.03 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.20 Total: -1.40 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.86 Total: 4.64 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.76 Total: -49.00 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.63 -8.40 -46.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285997005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.934 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds