Wall clock time and date at job start Tue Mar 31 2020 20:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34772 * 119.99824 * 2 1 4 4 O 1.21288 * 120.00326 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.00183 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.47220 * 179.97438 * 5 3 2 7 7 C 1.76200 * 100.00330 * 180.02562 * 6 5 3 8 8 H 1.08008 * 119.99569 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00550 * 180.02562 * 7 6 5 10 10 N 1.31637 * 119.99487 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00223 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47235 * 119.99972 * 11 9 7 14 14 H 1.48499 * 109.47432 * 240.00275 * 11 9 7 15 15 C 1.46491 * 120.00161 * 179.97438 * 2 1 3 16 16 C 1.53954 * 113.74248 * 60.00078 * 15 2 1 17 17 N 1.47581 * 86.11703 * 269.26101 * 16 15 2 18 18 C 1.34771 * 134.49381 * 155.35430 * 17 16 15 19 19 O 1.21685 * 120.00001 * 354.62928 * 18 17 16 20 20 C 1.46766 * 120.00071 * 174.62617 * 18 17 16 21 21 C 1.36659 * 126.84710 * 4.82523 * 20 18 17 22 22 N 1.33312 * 107.78668 * 179.89435 * 21 20 18 23 23 C 1.30855 * 109.68665 * 0.38087 * 22 21 20 24 24 N 1.34490 * 109.16170 * 359.75881 * 23 22 21 25 25 C 1.46501 * 126.46975 * 180.02562 * 24 23 22 26 26 C 1.47584 * 91.01318 * 335.35947 * 17 16 15 27 27 H 1.09000 * 109.46879 * 269.99979 * 1 2 3 28 28 H 1.08994 * 109.47096 * 29.99706 * 1 2 3 29 29 H 1.08998 * 109.46704 * 150.00071 * 1 2 3 30 30 H 1.08993 * 109.46825 * 300.00368 * 5 3 2 31 31 H 1.08997 * 109.46780 * 60.00139 * 5 3 2 32 32 H 0.97004 * 119.99126 * 180.02562 * 10 9 7 33 33 H 1.08997 * 113.01879 * 191.66378 * 15 2 1 34 34 H 1.08997 * 113.76665 * 23.56109 * 16 15 2 35 35 H 1.08994 * 113.76910 * 154.95915 * 16 15 2 36 36 H 1.08003 * 126.10567 * 359.97438 * 21 20 18 37 37 H 1.08005 * 125.41751 * 179.79037 * 23 22 21 38 38 H 1.08995 * 109.47467 * 274.87004 * 25 24 23 39 39 H 1.09003 * 109.47102 * 34.87369 * 25 24 23 40 40 H 1.09005 * 109.46768 * 154.86672 * 25 24 23 41 41 H 1.08996 * 113.76903 * 270.33477 * 26 17 16 42 42 H 1.09001 * 113.76687 * 138.94724 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1673 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5615 3.8481 0.0003 7 6 1.4415 5.2083 0.0002 8 1 0.3761 5.0305 0.0001 9 6 1.9281 6.5081 0.0003 10 7 3.2266 6.7247 -0.0001 11 14 0.7407 7.9500 -0.0005 12 1 -0.6547 7.4421 -0.0005 13 1 0.9658 8.7774 1.2120 14 1 0.9669 8.7770 -1.2130 15 6 2.1976 -1.2686 0.0006 16 6 1.8973 -2.1583 -1.2195 17 7 0.8246 -2.7509 -0.3972 18 6 -0.3331 -3.3850 -0.6693 19 8 -0.7195 -3.4791 -1.8193 20 6 -1.1277 -3.9620 0.4214 21 6 -0.8767 -3.8602 1.7609 22 7 -1.8367 -4.5224 2.4066 23 6 -2.6719 -5.0410 1.5431 24 7 -2.2751 -4.7214 0.2984 25 6 -2.9354 -5.1056 -0.9517 26 6 1.5287 -2.3702 0.8427 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8907 31 1 0.7584 2.5302 0.8892 32 1 3.5666 7.6332 0.0003 33 1 3.2615 -1.1464 0.2033 34 1 1.5328 -1.6069 -2.0861 35 1 2.6995 -2.8547 -1.4634 36 1 -0.0491 -3.3356 2.2152 37 1 -3.5418 -5.6314 1.7905 38 1 -2.5930 -6.0952 -1.2542 39 1 -4.0148 -5.1248 -0.8015 40 1 -2.6896 -4.3825 -1.7294 41 1 2.2226 -3.1289 1.2045 42 1 0.8699 -1.9881 1.6224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285997005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:11 Heat of formation + Delta-G solvation = 28.952668 kcal Electronic energy + Delta-G solvation = -26558.524501 eV Core-core repulsion = 22667.508636 eV Total energy + Delta-G solvation = -3891.015865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.26534 -41.89759 -40.22011 -38.77653 -35.76879 -35.00369 -34.58150 -32.26519 -30.91503 -29.50543 -28.10946 -27.77032 -27.63116 -27.22949 -24.37575 -22.67021 -22.32808 -20.78787 -20.00426 -19.51930 -18.60992 -18.27645 -17.73168 -17.20349 -16.95292 -16.88649 -16.80612 -16.62824 -16.31393 -15.70427 -15.19330 -14.79805 -14.71145 -14.63724 -14.50819 -14.25683 -14.14138 -13.84930 -13.63297 -13.58922 -13.44747 -13.28187 -13.14471 -12.91716 -12.80851 -12.59495 -12.27736 -11.71423 -11.40103 -11.15579 -11.00227 -10.94664 -10.76583 -10.26985 -10.01544 -9.78906 -9.58748 -8.66092 -8.34856 -6.12235 0.22141 1.23658 1.27391 1.41200 1.44375 1.50378 1.56308 1.78811 1.98466 2.00377 2.23414 2.27091 2.99497 3.15198 3.23861 3.34409 3.67456 3.70715 3.78871 3.90590 4.04440 4.07489 4.21394 4.25793 4.31618 4.33992 4.37347 4.46978 4.50205 4.54059 4.60555 4.64455 4.73160 4.79612 4.81856 5.13137 5.41313 5.42417 5.48545 6.05658 6.14971 6.20405 6.44214 6.78024 6.96193 7.06875 7.07641 8.74475 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002333 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.085512 B =11998.982690 C =12591.259189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.541 3.459 4 O -0.552 6.552 5 C -0.127 4.127 6 S -0.145 6.145 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.014 3.986 10 N -0.910 5.910 11 Si 0.997 3.003 12 H -0.258 1.258 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.104 3.896 16 C 0.103 3.897 17 N -0.632 5.632 18 C 0.615 3.385 19 O -0.583 6.583 20 C -0.109 4.109 21 C 0.038 3.962 22 N -0.531 5.531 23 C 0.219 3.781 24 N -0.434 5.434 25 C 0.062 3.938 26 C 0.099 3.901 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.194 0.806 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.141 0.859 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 -27.414 1.844 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.329 3.671 4 O -0.429 6.429 5 C -0.278 4.278 6 S 0.083 5.917 7 C -0.693 4.693 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.546 5.546 11 Si 0.819 3.181 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.200 1.200 15 C -0.001 4.001 16 C -0.019 4.019 17 N -0.366 5.366 18 C 0.406 3.594 19 O -0.465 6.465 20 C -0.226 4.226 21 C -0.116 4.116 22 N -0.249 5.249 23 C -0.063 4.063 24 N -0.114 5.114 25 C -0.079 4.079 26 C -0.023 4.023 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.211 0.789 37 H 0.268 0.732 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.159 0.841 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.597 -27.583 1.854 29.979 hybrid contribution -1.733 1.089 -1.113 2.329 sum -13.330 -26.494 0.741 29.667 Atomic orbital electron populations 1.21962 0.77967 1.03580 1.03134 1.47435 1.07495 1.04086 1.73433 1.20020 0.87249 0.84990 0.74873 1.90690 1.15103 1.87252 1.49868 1.23390 1.02896 0.95232 1.06250 1.85498 1.12244 0.96995 1.97005 1.23211 0.94596 0.92736 1.58750 0.90140 1.26095 0.97567 1.01620 0.93791 1.70184 1.13977 1.22426 1.48038 0.84928 0.78182 0.76885 0.78099 1.18198 1.19848 1.19984 1.22598 0.98637 0.82455 0.96424 1.23841 0.88180 0.93984 0.95919 1.49781 1.18427 1.56394 1.12007 1.16520 0.80028 0.76515 0.86311 1.90778 1.71084 1.61509 1.23088 1.20636 0.95877 1.10006 0.96034 1.23213 0.99675 1.00183 0.88558 1.70216 1.05823 1.14965 1.33936 1.25993 1.01523 1.00891 0.77919 1.45517 1.19171 1.36846 1.09837 1.22473 0.99576 1.02825 0.83039 1.24085 0.94642 0.94983 0.88612 0.90669 0.90838 0.90801 0.87904 0.87436 0.91977 0.85274 0.91038 0.85492 0.78900 0.73156 0.89121 0.86085 0.89854 0.84142 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 9.19 127.77 1.17 2.73 16 2 N -0.59 -14.52 3.09 -828.28 -2.56 -17.08 16 3 C 0.54 19.05 7.69 87.66 0.67 19.72 16 4 O -0.55 -23.67 15.35 -3.05 -0.05 -23.71 16 5 C -0.13 -4.96 4.71 71.24 0.34 -4.62 16 6 S -0.14 -7.90 20.57 -56.49 -1.16 -9.06 16 7 C -0.55 -30.89 9.50 67.95 0.65 -30.25 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 C 0.01 0.80 5.49 84.86 0.47 1.27 16 10 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 11 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 C 0.10 1.89 4.51 46.75 0.21 2.10 16 16 C 0.10 1.75 8.32 86.48 0.72 2.47 16 17 N -0.63 -10.71 2.22 -841.74 -1.87 -12.58 16 18 C 0.61 13.24 7.03 86.47 0.61 13.85 16 19 O -0.58 -16.25 15.50 -4.30 -0.07 -16.31 16 20 C -0.11 -2.05 6.91 40.01 0.28 -1.77 16 21 C 0.04 0.66 11.01 84.10 0.93 1.58 16 22 N -0.53 -9.73 11.20 -199.57 -2.24 -11.97 16 23 C 0.22 2.75 12.52 180.33 2.26 5.01 16 24 N -0.43 -6.48 3.17 -539.81 -1.71 -8.19 16 25 C 0.06 0.62 10.86 127.77 1.39 2.00 16 26 C 0.10 1.15 6.32 86.48 0.55 1.69 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.57 6.44 -2.39 -0.02 1.56 16 29 H 0.07 1.52 5.32 -2.39 -0.01 1.51 16 30 H 0.10 3.75 7.40 -2.40 -0.02 3.73 16 31 H 0.11 3.83 8.11 -2.40 -0.02 3.81 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 33 H 0.13 2.51 7.25 -2.39 -0.02 2.49 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.19 2.44 5.16 -2.91 -0.01 2.42 16 37 H 0.25 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 1.32 6.15 -2.38 -0.01 1.31 16 41 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 1.08 6.12 -2.39 -0.01 1.06 16 Total: -1.00 -84.91 364.23 3.95 -80.96 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.06 Total: 11.78 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 10.23 Total: 15.79 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -8.09 Total: -104.93 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.11 Total: -40.03 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -84.91 3.95 -80.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285997005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.915 kcal (2) G-P(sol) polarization free energy of solvation -84.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds