Wall clock time and date at job start Tue Mar 31 2020 20:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00172 * 2 1 4 4 O 1.21275 * 119.99875 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99907 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.46940 * 179.97438 * 5 3 2 7 7 C 1.76200 * 99.99704 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00386 * 0.02562 * 7 6 5 9 9 C 1.38806 * 119.99781 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00019 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00059 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47364 * 89.99352 * 11 9 7 13 13 H 1.48504 * 109.47006 * 209.99781 * 11 9 7 14 14 H 1.48507 * 109.46820 * 329.99406 * 11 9 7 15 15 C 1.46507 * 119.99911 * 180.02562 * 2 1 3 16 16 C 1.53779 * 113.61373 * 113.97893 * 15 2 1 17 17 C 1.53781 * 87.08285 * 270.88403 * 16 15 2 18 18 N 1.46496 * 113.61241 * 220.02331 * 17 16 15 19 19 C 1.34783 * 119.99815 * 205.00205 * 18 17 16 20 20 O 1.21602 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.47425 * 120.00199 * 179.97438 * 19 18 17 22 22 C 1.41295 * 126.41207 * 359.68418 * 21 19 18 23 23 N 1.30452 * 108.02069 * 179.88023 * 22 21 19 24 24 N 1.39934 * 108.89637 * 0.38439 * 23 22 21 25 25 H 0.97001 * 125.75186 * 179.73033 * 24 23 22 26 26 C 1.34258 * 108.49324 * 359.75265 * 24 23 22 27 27 C 1.53777 * 113.61191 * 16.48108 * 15 2 1 28 28 H 1.09000 * 109.47146 * 264.65821 * 1 2 3 29 29 H 1.09003 * 109.47369 * 24.65430 * 1 2 3 30 30 H 1.08992 * 109.47442 * 144.65584 * 1 2 3 31 31 H 1.09004 * 109.46822 * 299.99975 * 5 3 2 32 32 H 1.08996 * 109.47113 * 59.99722 * 5 3 2 33 33 H 0.96997 * 120.00289 * 179.97438 * 10 9 7 34 34 H 1.08994 * 112.90362 * 245.23402 * 15 2 1 35 35 H 1.08997 * 113.61698 * 25.43536 * 16 15 2 36 36 H 1.09005 * 113.61051 * 156.33411 * 16 15 2 37 37 H 1.08993 * 113.61184 * 89.11899 * 17 16 15 38 38 H 0.96999 * 120.00435 * 25.00161 * 18 17 16 39 39 H 1.07999 * 125.99303 * 0.02562 * 22 21 19 40 40 H 1.07999 * 126.29152 * 179.97438 * 26 24 23 41 41 H 1.09006 * 113.61481 * 203.66302 * 27 15 2 42 42 H 1.09000 * 113.62143 * 334.56897 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5617 3.8480 0.0012 7 6 1.4416 5.2081 0.0010 8 1 0.3764 5.0305 0.0011 9 6 1.9284 6.5080 0.0019 10 7 1.0917 7.5242 0.0013 11 14 3.7709 6.8154 0.0026 12 1 4.2596 6.8975 -1.3972 13 1 4.0595 8.0924 0.7035 14 1 4.4584 5.7004 0.7023 15 6 2.1975 -1.2688 -0.0006 16 6 3.0014 -1.5154 -1.2881 17 6 1.7379 -2.1833 -1.8556 18 7 2.0139 -3.3874 -2.6431 19 6 1.1427 -3.7874 -3.5906 20 8 0.1273 -3.1491 -3.7913 21 6 1.4207 -4.9988 -4.3835 22 6 2.5544 -5.8343 -4.2690 23 7 2.4335 -6.7999 -5.1377 24 7 1.2388 -6.6260 -5.8452 25 1 0.9096 -7.2029 -6.5521 26 6 0.6252 -5.5258 -5.3809 27 6 1.3353 -2.4776 -0.4008 28 1 -0.3633 -0.0957 1.0232 29 1 -0.3634 0.9340 -0.4287 30 1 -0.3634 -0.8382 -0.5944 31 1 0.7585 2.5302 -0.8892 32 1 0.7591 2.5298 0.8908 33 1 1.4318 8.4326 0.0023 34 1 2.7738 -1.4263 0.9110 35 1 3.2831 -0.6003 -1.8090 36 1 3.8370 -2.2028 -1.1562 37 1 1.0673 -1.4894 -2.3624 38 1 2.8237 -3.8968 -2.4827 39 1 3.3759 -5.6987 -3.5811 40 1 -0.3174 -5.1263 -5.7249 41 1 1.7154 -3.4282 -0.0264 42 1 0.2719 -2.3394 -0.2056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288289980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:13 Heat of formation + Delta-G solvation = 7.011620 kcal Electronic energy + Delta-G solvation = -25824.774470 eV Core-core repulsion = 21932.807170 eV Total energy + Delta-G solvation = -3891.967300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.33134 -41.66659 -40.17027 -38.81015 -35.88990 -34.66778 -34.16805 -32.61215 -31.29731 -30.61931 -28.38514 -27.86074 -26.53034 -25.59808 -23.56259 -22.94210 -21.82531 -21.07470 -20.06184 -19.62938 -19.18032 -18.24429 -17.51270 -17.28078 -17.10977 -16.95307 -16.59391 -16.22727 -15.87847 -15.53158 -15.38995 -15.14851 -15.02834 -14.80960 -14.35918 -14.19159 -13.81706 -13.76987 -13.52955 -13.34754 -13.26848 -13.06556 -12.99634 -12.78255 -12.53468 -12.19402 -11.93771 -11.85055 -11.48047 -11.16710 -10.95741 -10.85848 -10.81725 -10.52167 -10.12658 -9.74481 -9.64944 -8.99249 -8.51027 -6.21835 0.55635 0.98254 1.16559 1.31810 1.46320 1.54490 1.55692 1.78715 2.07027 2.25546 2.35475 2.46623 2.69012 2.87014 3.33608 3.50055 3.65754 3.73663 3.89339 3.92170 4.03604 4.12459 4.17149 4.26132 4.40619 4.44066 4.56729 4.59372 4.74028 4.75105 4.82984 4.91948 4.99177 5.07164 5.12860 5.35480 5.52331 5.70009 5.71449 6.11748 6.21518 6.23936 6.47039 6.68100 6.93920 7.11850 7.33434 8.61360 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.002012 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.292804 B =13915.042380 C =14040.655841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C 0.534 3.466 4 O -0.553 6.553 5 C -0.108 4.108 6 S -0.174 6.174 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.045 3.955 10 N -0.917 5.917 11 Si 0.915 3.085 12 H -0.263 1.263 13 H -0.259 1.259 14 H -0.236 1.236 15 C 0.118 3.882 16 C -0.146 4.146 17 C 0.128 3.872 18 N -0.702 5.702 19 C 0.594 3.406 20 O -0.593 6.593 21 C -0.320 4.320 22 C 0.091 3.909 23 N -0.324 5.324 24 N -0.452 5.452 25 H 0.459 0.541 26 C 0.143 3.857 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.277 0.723 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.416 0.584 39 H 0.218 0.782 40 H 0.210 0.790 41 H 0.127 0.873 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -33.528 -6.823 34.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C 0.321 3.679 4 O -0.431 6.431 5 C -0.259 4.259 6 S 0.053 5.947 7 C -0.677 4.677 8 H 0.079 0.921 9 C -0.161 4.161 10 N -0.554 5.554 11 Si 0.737 3.263 12 H -0.188 1.188 13 H -0.183 1.183 14 H -0.160 1.160 15 C 0.015 3.985 16 C -0.185 4.185 17 C 0.022 3.978 18 N -0.352 5.352 19 C 0.383 3.617 20 O -0.474 6.474 21 C -0.335 4.335 22 C -0.097 4.097 23 N -0.145 5.145 24 N -0.158 5.158 25 H 0.307 0.693 26 C -0.012 4.012 27 C -0.173 4.173 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.253 0.747 39 H 0.235 0.765 40 H 0.227 0.773 41 H 0.145 0.855 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.776 -33.986 -7.439 34.799 hybrid contribution -1.319 1.310 -0.084 1.861 sum -0.544 -32.676 -7.523 33.535 Atomic orbital electron populations 1.22174 0.77516 1.04461 1.03773 1.47564 1.07976 1.04227 1.73282 1.19908 0.87306 0.84935 0.75707 1.90669 1.14950 1.87367 1.50121 1.23310 1.01840 0.93884 1.06837 1.84644 1.13701 0.98802 1.97550 1.22458 0.94379 0.92562 1.58268 0.92072 1.25581 1.02845 0.94749 0.92896 1.70017 1.36790 0.99514 1.49125 0.85854 0.80122 0.80119 0.80187 1.18765 1.18275 1.15985 1.21818 0.94964 0.83018 0.98730 1.23668 0.97745 1.00963 0.96103 1.22407 0.97674 0.86871 0.90827 1.45594 1.24961 1.27808 1.36848 1.17568 0.82319 0.83089 0.78733 1.90769 1.28856 1.57846 1.69973 1.20307 1.01412 1.03360 1.08410 1.24545 0.97959 0.90403 0.96812 1.77153 1.02065 1.24402 1.10887 1.46292 1.16336 1.21888 1.31332 0.69319 1.23440 0.98336 0.86911 0.92466 1.23809 1.01495 0.97701 0.94340 0.90333 0.90776 0.88747 0.87478 0.87150 0.91375 0.88902 0.93144 0.86006 0.89299 0.74676 0.76546 0.77326 0.85529 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 9.74 127.77 1.24 2.41 16 2 N -0.60 -14.86 3.01 -819.66 -2.47 -17.32 16 3 C 0.53 18.79 7.41 87.66 0.65 19.44 16 4 O -0.55 -23.30 15.05 -3.01 -0.05 -23.34 16 5 C -0.11 -4.20 4.63 71.24 0.33 -3.87 16 6 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 7 C -0.53 -31.18 10.04 67.96 0.68 -30.50 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 C 0.04 2.65 5.50 84.86 0.47 3.11 16 10 N -0.92 -56.25 13.97 21.65 0.30 -55.95 16 11 Si 0.92 45.39 27.74 68.60 1.90 47.29 16 12 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 15 C 0.12 2.31 4.09 45.51 0.19 2.49 16 16 C -0.15 -2.77 7.18 31.12 0.22 -2.55 16 17 C 0.13 2.20 4.02 45.52 0.18 2.38 16 18 N -0.70 -9.55 5.35 -443.30 -2.37 -11.92 16 19 C 0.59 11.04 7.81 86.66 0.68 11.72 16 20 O -0.59 -15.98 16.50 -4.04 -0.07 -16.05 16 21 C -0.32 -4.41 6.13 -20.15 -0.12 -4.53 16 22 C 0.09 0.96 11.50 85.65 0.99 1.95 16 23 N -0.32 -4.20 12.63 -56.27 -0.71 -4.91 16 24 N -0.45 -3.73 7.29 -56.32 -0.41 -4.14 16 25 H 0.46 0.68 8.96 -213.43 -1.91 -1.23 16 26 C 0.14 1.47 11.82 84.28 1.00 2.46 16 27 C -0.13 -1.74 7.00 31.12 0.22 -1.52 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.50 6.25 -2.39 -0.01 1.48 16 30 H 0.09 1.43 5.63 -2.39 -0.01 1.42 16 31 H 0.11 3.93 7.42 -2.39 -0.02 3.91 16 32 H 0.11 3.98 8.11 -2.40 -0.02 3.96 16 33 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.36 7.41 -2.39 -0.02 1.35 16 36 H 0.12 1.59 8.12 -2.38 -0.02 1.57 16 37 H 0.09 2.10 7.35 -2.39 -0.02 2.08 16 38 H 0.42 2.84 7.68 -92.71 -0.71 2.13 16 39 H 0.22 0.69 7.50 -2.91 -0.02 0.67 16 40 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.09 1.13 5.81 -2.39 -0.01 1.12 16 Total: -1.00 -85.49 366.98 0.23 -85.25 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -1.57 Total: 8.03 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.72 Total: 2.99 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -5.66 Total: -94.25 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.11 Total: -39.39 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -85.49 0.23 -85.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288289980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.266 kcal (2) G-P(sol) polarization free energy of solvation -85.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds