Wall clock time and date at job start Tue Mar 31 2020 21:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 116.99868 * 2 1 4 4 C 1.38836 * 119.97790 * 359.97438 * 3 2 1 5 5 C 1.38348 * 120.22808 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 119.90950 * 180.02562 * 5 4 3 7 7 C 1.38136 * 120.17858 * 0.02562 * 5 4 3 8 8 C 1.39539 * 119.95300 * 359.97438 * 7 5 4 9 9 C 1.47865 * 120.11513 * 180.02562 * 8 7 5 10 10 O 1.21551 * 120.00185 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99766 * 359.97438 * 9 8 7 12 12 C 1.46493 * 119.99962 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46925 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47626 * 294.99894 * 13 12 11 15 15 N 1.46503 * 109.47162 * 55.00535 * 13 12 11 16 16 C 1.36930 * 119.99673 * 205.00003 * 15 13 12 17 17 H 1.08003 * 120.00703 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99656 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00005 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99994 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47055 * 119.99692 * 20 18 16 23 23 H 1.48498 * 109.47378 * 239.99648 * 20 18 16 24 24 C 1.53000 * 109.46947 * 175.00178 * 13 12 11 25 25 C 1.53000 * 117.49990 * 248.74583 * 24 13 12 26 26 C 1.53009 * 117.50051 * 180.08955 * 24 13 12 27 27 C 1.38459 * 119.98211 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47076 * 299.99989 * 1 2 3 29 29 H 1.08998 * 109.47285 * 60.00014 * 1 2 3 30 30 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.88105 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.01921 * 180.02562 * 7 5 4 33 33 H 0.97008 * 119.99971 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.47310 * 299.99836 * 12 11 9 35 35 H 1.09003 * 109.47127 * 60.00410 * 12 11 9 36 36 H 0.96999 * 119.99684 * 24.99481 * 15 13 12 37 37 H 0.97001 * 119.99883 * 180.02562 * 19 18 16 38 38 H 1.08998 * 115.55413 * 34.42059 * 24 13 12 39 39 H 1.09003 * 117.49778 * 0.02562 * 25 24 13 40 40 H 1.09003 * 117.49913 * 145.02117 * 25 24 13 41 41 H 1.09000 * 117.49607 * 214.98210 * 26 24 13 42 42 H 1.09007 * 117.49471 * 359.97438 * 26 24 13 43 43 H 1.08008 * 120.08792 * 0.25681 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3750 -0.0005 5 6 1.9120 3.6105 -0.0011 6 17 0.9578 5.0608 -0.0011 7 6 3.2909 3.6931 -0.0016 8 6 4.0587 2.5280 -0.0011 9 6 5.5349 2.6123 -0.0011 10 8 6.2017 1.5960 -0.0001 11 7 6.1411 3.8160 -0.0021 12 6 7.6037 3.8996 -0.0016 13 6 8.0305 5.3688 -0.0036 14 1 7.7153 5.8375 -0.9358 15 7 7.4055 6.0605 1.1265 16 6 7.1995 7.4132 1.0722 17 1 7.4981 7.9702 0.1964 18 6 6.6078 8.0686 2.1433 19 7 6.2444 7.3899 3.2108 20 14 6.3273 9.9140 2.0695 21 1 6.8213 10.4383 0.7709 22 1 4.8758 10.1996 2.1993 23 1 7.0623 10.5712 3.1799 24 6 9.5527 5.4578 0.1226 25 6 10.1217 6.0226 1.4258 26 6 10.1797 6.8534 0.1415 27 6 3.4287 1.2830 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2110 2.3158 -0.0005 32 1 3.7743 4.6589 -0.0016 33 1 5.6090 4.6271 -0.0025 34 1 7.9954 3.4083 0.8891 35 1 7.9961 3.4064 -0.8909 36 1 7.1377 5.5603 1.9132 37 1 5.8306 7.8479 3.9591 38 1 10.1125 4.6613 -0.3674 39 1 9.4116 6.3303 2.1934 40 1 11.0560 5.5978 1.7929 41 1 11.1521 6.9748 -0.3358 42 1 9.5077 7.7082 0.0636 43 1 4.0181 0.3780 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317029815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:23 Heat of formation + Delta-G solvation = -29.300447 kcal Electronic energy + Delta-G solvation = -26597.143331 eV Core-core repulsion = 22669.264964 eV Total energy + Delta-G solvation = -3927.878367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63743 -40.55466 -39.18133 -38.51084 -37.29272 -35.98847 -35.07585 -32.86733 -32.15345 -31.47525 -29.64859 -28.25331 -25.92077 -25.04963 -23.77844 -23.50301 -22.90486 -21.55045 -20.66091 -19.77256 -19.08529 -17.90744 -17.49255 -17.29710 -16.86010 -16.73502 -16.71695 -16.30650 -16.12222 -15.80082 -15.39037 -15.29241 -14.82200 -14.63453 -14.47429 -14.30596 -13.69762 -13.41596 -13.11463 -12.96014 -12.88729 -12.84235 -12.64305 -12.55867 -12.28849 -12.10750 -12.08055 -11.90840 -11.85208 -11.57858 -11.22868 -11.02280 -10.81940 -10.59759 -10.23377 -9.96544 -9.45030 -8.97387 -7.86391 -5.13721 -0.46179 0.03419 0.92870 1.48804 1.52233 1.58583 1.65011 1.94631 2.37109 2.57846 2.59951 3.15707 3.44352 3.50645 3.73405 3.82538 3.91632 3.98697 3.99975 4.09545 4.24978 4.31077 4.36144 4.39899 4.40639 4.51951 4.60370 4.68728 4.75599 4.87032 4.91483 4.95896 4.99439 5.04109 5.20306 5.23411 5.25774 5.42177 5.52041 5.69536 5.71154 6.21059 6.33506 6.47972 7.09439 7.42464 8.12608 8.38131 9.35940 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.003468 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.986645 B = 8072.345400 C =10105.782130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.137 3.863 4 C -0.168 4.168 5 C -0.006 4.006 6 Cl -0.054 7.054 7 C -0.115 4.115 8 C -0.088 4.088 9 C 0.557 3.443 10 O -0.572 6.572 11 N -0.701 5.701 12 C 0.126 3.874 13 C 0.192 3.808 14 H 0.062 0.938 15 N -0.721 5.721 16 C -0.216 4.216 17 H 0.077 0.923 18 C -0.063 4.063 19 N -0.962 5.962 20 Si 0.952 3.048 21 H -0.268 1.268 22 H -0.299 1.299 23 H -0.304 1.304 24 C -0.167 4.167 25 C -0.173 4.173 26 C -0.170 4.170 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.411 0.589 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.374 0.626 37 H 0.246 0.754 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -11.468 -9.487 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.091 3.909 4 C -0.187 4.187 5 C -0.033 4.033 6 Cl -0.025 7.025 7 C -0.135 4.135 8 C -0.091 4.091 9 C 0.344 3.656 10 O -0.453 6.453 11 N -0.352 5.352 12 C 0.002 3.998 13 C 0.083 3.917 14 H 0.080 0.920 15 N -0.361 5.361 16 C -0.348 4.348 17 H 0.094 0.906 18 C -0.256 4.256 19 N -0.613 5.613 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.227 1.227 23 H -0.232 1.232 24 C -0.189 4.189 25 C -0.211 4.211 26 C -0.207 4.207 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.189 0.811 32 H 0.157 0.843 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.207 0.793 37 H 0.055 0.945 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.866 -12.029 -9.578 18.270 hybrid contribution -0.644 1.775 0.834 2.064 sum -10.511 -10.255 -8.744 17.091 Atomic orbital electron populations 1.23505 0.75678 1.06282 1.02775 1.86129 1.24037 1.25096 1.88268 1.18578 0.91262 0.84924 0.96167 1.21470 1.02247 0.89473 1.05529 1.20532 0.91280 0.88422 1.03065 1.98402 1.71361 1.35985 1.96725 1.21209 0.92462 0.98724 1.01117 1.19483 0.92371 0.93378 1.03886 1.18269 0.87506 0.83478 0.76342 1.90730 1.66626 1.35770 1.52195 1.45905 1.08512 1.08177 1.72616 1.21573 0.78982 0.97135 1.02132 1.20146 0.90204 0.89801 0.91590 0.91975 1.42545 1.71338 1.05037 1.17159 1.19430 1.30270 0.85032 1.00042 0.90560 1.25250 1.02988 1.00502 0.96825 1.69795 1.48910 1.35422 1.07142 0.85387 0.76566 0.82546 0.77163 1.19215 1.22710 1.23164 1.23047 0.96784 0.97175 1.01845 1.22770 1.01506 1.04708 0.92076 1.22845 1.01629 0.94626 1.01619 1.20559 0.92229 0.97889 1.01232 0.91325 0.90999 0.85716 0.81149 0.84332 0.75153 0.92539 0.89596 0.79326 0.94476 0.86563 0.90438 0.89183 0.88094 0.90295 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.20 10.49 -92.53 -0.97 -7.17 16 3 C 0.14 3.06 6.68 22.47 0.15 3.21 16 4 C -0.17 -3.36 8.81 22.44 0.20 -3.16 16 5 C -0.01 -0.15 6.31 22.27 0.14 -0.01 16 6 Cl -0.05 -1.26 28.95 -2.72 -0.08 -1.34 16 7 C -0.12 -3.18 9.32 22.56 0.21 -2.97 16 8 C -0.09 -2.58 5.87 -20.10 -0.12 -2.70 16 9 C 0.56 18.80 7.77 86.79 0.67 19.47 16 10 O -0.57 -22.12 16.35 -3.88 -0.06 -22.18 16 11 N -0.70 -22.93 5.34 -465.96 -2.49 -25.42 16 12 C 0.13 4.05 5.21 86.38 0.45 4.50 16 13 C 0.19 6.64 2.86 44.99 0.13 6.77 16 14 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 15 N -0.72 -31.38 3.08 -322.93 -0.99 -32.37 16 16 C -0.22 -10.53 8.16 84.04 0.69 -9.84 16 17 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 18 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 19 N -0.96 -55.12 13.06 21.65 0.28 -54.83 16 20 Si 0.95 43.99 29.55 68.60 2.03 46.02 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 C -0.17 -5.33 5.71 -10.79 -0.06 -5.39 16 25 C -0.17 -6.19 9.74 30.62 0.30 -5.90 16 26 C -0.17 -5.61 9.87 30.62 0.30 -5.31 16 27 C -0.10 -2.67 9.53 22.63 0.22 -2.46 16 28 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 29 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.17 2.33 6.28 -2.91 -0.02 2.31 16 32 H 0.14 3.96 6.40 -2.91 -0.02 3.94 16 33 H 0.41 13.56 6.17 -92.70 -0.57 12.99 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.37 18.34 7.80 -92.71 -0.72 17.62 16 37 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.12 3.09 8.11 -2.39 -0.02 3.07 16 39 H 0.08 3.47 6.68 -2.39 -0.02 3.46 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.08 2.99 6.22 -2.38 -0.01 2.98 16 43 H 0.14 3.98 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -62.17 373.91 2.34 -59.83 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.23 Total: 42.88 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.85 Total: -5.42 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.20 Total: -112.62 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.03 Total: -29.35 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -62.17 2.34 -59.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317029815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -62.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds