Wall clock time and date at job start Tue Mar 31 2020 21:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35716 * 117.00270 * 2 1 4 4 C 1.39064 * 119.89739 * 0.02562 * 3 2 1 5 5 C 1.37645 * 120.12295 * 179.72661 * 4 3 2 6 6 C 1.39780 * 119.92346 * 0.50519 * 5 4 3 7 7 C 1.47527 * 120.09761 * 179.76654 * 6 5 4 8 8 O 1.21595 * 120.00135 * 228.10445 * 7 6 5 9 9 N 1.34774 * 119.99758 * 48.10655 * 7 6 5 10 10 C 1.47021 * 125.65005 * 355.17140 * 9 7 6 11 11 C 1.54326 * 107.27237 * 178.90633 * 10 9 7 12 12 C 1.55161 * 103.10101 * 337.71581 * 11 10 9 13 13 H 1.08999 * 111.00399 * 277.51736 * 12 11 10 14 14 C 1.53001 * 111.00250 * 153.66495 * 12 11 10 15 15 N 1.46499 * 109.46912 * 175.00147 * 14 12 11 16 16 C 1.36940 * 119.99921 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00182 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99847 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00188 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47131 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47311 * 119.99777 * 20 18 16 23 23 H 1.48496 * 109.47360 * 240.00110 * 20 18 16 24 24 C 1.47429 * 125.64796 * 175.12867 * 9 7 6 25 25 C 1.39853 * 119.80220 * 359.49656 * 6 5 4 26 26 Cl 1.73592 * 120.06381 * 180.27017 * 25 6 5 27 27 C 1.37897 * 119.87310 * 0.25241 * 25 6 5 28 28 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47155 * 300.00584 * 1 2 3 30 30 H 1.09005 * 109.47212 * 60.00183 * 1 2 3 31 31 H 1.07997 * 119.93469 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.03557 * 180.26124 * 5 4 3 33 33 H 1.08995 * 109.88530 * 59.48651 * 10 9 7 34 34 H 1.08999 * 109.88034 * 298.32041 * 10 9 7 35 35 H 1.09000 * 110.72323 * 96.16630 * 11 10 9 36 36 H 1.09004 * 110.72120 * 219.26844 * 11 10 9 37 37 H 1.08996 * 109.47092 * 294.99895 * 14 12 11 38 38 H 1.09002 * 109.47302 * 55.00155 * 14 12 11 39 39 H 0.96999 * 120.00361 * 359.97438 * 15 14 12 40 40 H 0.97003 * 119.99975 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.36519 * 323.00148 * 24 9 7 42 42 H 1.08998 * 110.36966 * 85.21336 * 24 9 7 43 43 H 1.08002 * 119.95930 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2857 2.3742 0.0005 5 6 1.9058 3.6030 0.0062 6 6 3.3015 3.6798 0.0008 7 6 3.9701 4.9948 0.0016 8 8 4.8693 5.2202 -0.7852 9 7 3.5842 5.9463 0.8746 10 6 2.4522 5.8453 1.8073 11 6 2.4110 7.1556 2.6216 12 6 3.8626 7.6903 2.5011 13 1 4.5174 7.2105 3.2284 14 6 3.9006 9.2124 2.6524 15 7 5.2928 9.6684 2.6528 16 6 5.5764 11.0023 2.7778 17 1 4.7737 11.7181 2.8757 18 6 6.8956 11.4343 2.7788 19 7 7.8738 10.5619 2.6590 20 14 7.2824 13.2538 2.9486 21 1 6.0159 14.0202 3.0666 22 1 8.1080 13.4732 4.1633 23 1 8.0306 13.7147 1.7516 24 6 4.2280 7.2606 1.0532 25 6 4.0622 2.5062 0.0002 26 17 5.7959 2.5936 0.0006 27 6 3.4323 1.2795 -0.0002 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2074 2.3145 0.0014 32 1 1.3146 4.5069 0.0109 33 1 2.5977 4.9974 2.4765 34 1 1.5228 5.7256 1.2505 35 1 1.7032 7.8596 2.1840 36 1 2.1593 6.9548 3.6630 37 1 3.3675 9.6736 1.8211 38 1 3.4250 9.4962 3.5912 39 1 6.0139 9.0254 2.5653 40 1 8.7957 10.8638 2.6601 41 1 5.3090 7.1712 0.9459 42 1 3.8340 7.9771 0.3325 43 1 4.0184 0.3723 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317335300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:13 Heat of formation + Delta-G solvation = -30.698639 kcal Electronic energy + Delta-G solvation = -26366.834473 eV Core-core repulsion = 22438.895476 eV Total energy + Delta-G solvation = -3927.938997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88084 -39.87103 -38.10388 -37.18165 -36.47467 -34.66035 -32.44721 -31.53205 -30.77587 -30.25281 -28.72843 -27.89141 -25.59059 -24.15261 -23.18537 -22.60975 -21.93854 -20.16823 -19.77987 -18.67876 -17.61392 -17.04575 -16.90680 -16.30837 -15.94261 -15.83881 -15.37747 -14.77429 -14.61077 -14.44729 -14.10933 -13.77260 -13.52690 -13.45083 -13.34985 -13.07707 -12.71619 -12.52947 -12.47642 -12.22139 -12.14386 -11.78502 -11.52004 -11.31943 -11.18172 -11.11149 -10.86187 -10.61961 -10.58960 -10.42456 -10.00003 -9.84240 -9.67185 -9.29740 -8.86937 -8.74305 -8.51754 -6.91087 -5.74001 -3.03496 0.54744 0.72608 1.77542 2.60906 2.77023 2.95436 3.29099 3.45373 3.50396 3.53160 4.15745 4.29272 4.44790 4.52841 4.59907 4.63449 4.64023 4.73899 4.84660 4.89440 4.95155 4.98495 5.27301 5.31724 5.44103 5.49858 5.60114 5.61932 5.72673 5.74296 5.86977 5.92206 5.98095 6.00990 6.11097 6.26479 6.38991 6.43913 6.69493 6.77051 6.82692 7.54209 7.71999 8.17128 8.44102 9.55423 10.12492 10.46653 11.48682 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002382 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.256584 B =11751.685086 C =12726.749977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.157 3.843 4 C -0.210 4.210 5 C -0.038 4.038 6 C -0.151 4.151 7 C 0.572 3.428 8 O -0.515 6.515 9 N -0.612 5.612 10 C 0.099 3.901 11 C -0.126 4.126 12 C -0.105 4.105 13 H 0.086 0.914 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.117 3.883 25 C 0.045 3.955 26 Cl -0.031 7.031 27 C -0.151 4.151 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.365 -23.138 -3.710 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.229 4.229 5 C -0.057 4.057 6 C -0.155 4.155 7 C 0.359 3.641 8 O -0.391 6.391 9 N -0.346 5.346 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.124 4.124 13 H 0.104 0.896 14 C 0.037 3.963 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.004 4.004 25 C 0.017 3.983 26 Cl -0.002 7.002 27 C -0.171 4.171 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.632 -23.075 -4.181 29.952 hybrid contribution 0.332 0.868 0.107 0.935 sum -18.300 -22.207 -4.075 29.063 Atomic orbital electron populations 1.23166 0.77628 1.04464 1.01783 1.86052 1.21967 1.26391 1.87918 1.18957 0.91571 0.84530 0.93850 1.21247 1.00645 0.91737 1.09265 1.21136 0.92313 0.98108 0.94148 1.19700 0.93740 0.92877 1.09173 1.17576 0.82959 0.82843 0.80673 1.90864 1.29955 1.80219 1.38017 1.48453 1.31806 1.16859 1.37496 1.22189 0.89011 0.99338 0.91882 1.22661 0.97960 0.95442 1.00339 1.22676 0.95560 0.98261 0.95926 0.89582 1.20576 0.88767 0.88810 0.98098 1.42383 1.00894 1.05891 1.88596 1.19247 0.91680 0.84086 1.42178 0.91110 1.24762 0.95682 0.97656 1.02902 1.69673 0.98644 1.32419 1.57197 0.86120 0.77851 0.84983 0.77237 1.20573 1.21902 1.21857 1.22445 0.99269 0.82073 0.96659 1.20567 0.86405 0.92681 0.98643 1.98440 1.07052 1.98576 1.96125 1.20133 0.91781 0.97276 1.07876 0.87819 0.92171 0.92214 0.84237 0.83990 0.91432 0.91589 0.90248 0.89927 0.96013 0.95790 0.78186 0.93516 0.89778 0.90948 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.39 10.48 -18.85 -0.20 -2.59 16 3 C 0.16 1.38 6.69 -39.03 -0.26 1.12 16 4 C -0.21 -1.57 9.01 -39.49 -0.36 -1.93 16 5 C -0.04 -0.35 8.51 -39.22 -0.33 -0.68 16 6 C -0.15 -1.88 5.41 -104.93 -0.57 -2.45 16 7 C 0.57 8.96 6.91 -12.47 -0.09 8.88 16 8 O -0.52 -10.08 16.09 5.28 0.09 -9.99 16 9 N -0.61 -8.74 3.33 -171.44 -0.57 -9.31 16 10 C 0.10 1.02 5.66 -3.06 -0.02 1.00 16 11 C -0.13 -1.37 6.41 -24.89 -0.16 -1.53 16 12 C -0.10 -1.61 3.07 -88.21 -0.27 -1.88 16 13 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.17 3.18 5.73 -4.04 -0.02 3.15 16 15 N -0.73 -18.46 5.56 -59.91 -0.33 -18.80 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 20 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 C 0.12 1.94 6.33 -2.27 -0.01 1.92 16 25 C 0.05 0.55 6.33 -39.10 -0.25 0.31 16 26 Cl -0.03 -0.43 27.13 -51.86 -1.41 -1.84 16 27 C -0.15 -1.52 9.75 -39.46 -0.38 -1.91 16 28 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 30 H 0.06 0.17 7.65 -51.93 -0.40 -0.23 16 31 H 0.14 0.63 6.27 -52.49 -0.33 0.30 16 32 H 0.14 1.03 6.00 -52.48 -0.31 0.71 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.52 6.02 -51.93 -0.31 0.21 16 35 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 40 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -34.66 369.82 -8.94 -43.60 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.81 Total: 3.96 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.98 Total: -0.32 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.18 Total: -56.01 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.11 Total: -12.58 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.41 Total: -1.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.66 -8.94 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317335300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.902 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds