Wall clock time and date at job start Tue Mar 31 2020 20:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00494 * 2 1 4 4 O 1.21624 * 120.00031 * 185.24089 * 3 2 1 5 5 C 1.47271 * 119.99775 * 5.23581 * 3 2 1 6 6 C 1.35207 * 123.14002 * 186.70225 * 5 3 2 7 7 S 1.70936 * 108.82415 * 179.90712 * 6 5 3 8 8 C 1.70776 * 91.13370 * 0.30253 * 7 6 5 9 9 N 1.28645 * 110.55168 * 359.82049 * 8 7 6 10 10 C 1.46498 * 119.99603 * 180.02562 * 2 1 3 11 11 H 1.09002 * 110.64425 * 178.29556 * 10 2 1 12 12 C 1.54594 * 110.72693 * 301.44887 * 10 2 1 13 13 C 1.53996 * 105.14088 * 140.49396 * 12 10 2 14 14 N 1.47897 * 107.05796 * 1.22754 * 13 12 10 15 15 C 1.46901 * 111.00156 * 214.15461 * 14 13 12 16 16 C 1.50700 * 109.47520 * 177.59956 * 15 14 13 17 17 O 1.21294 * 119.99398 * 7.22209 * 16 15 14 18 18 N 1.34771 * 120.00179 * 187.22880 * 16 15 14 19 19 C 1.37099 * 119.99835 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99421 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00310 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99450 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47052 * 90.00176 * 23 21 19 25 25 H 1.48500 * 109.46976 * 210.00076 * 23 21 19 26 26 H 1.48496 * 109.47427 * 330.00086 * 23 21 19 27 27 C 1.48533 * 105.82261 * 334.66988 * 14 13 12 28 28 H 1.09002 * 109.47173 * 275.65676 * 1 2 3 29 29 H 1.09007 * 109.46971 * 35.64932 * 1 2 3 30 30 H 1.08995 * 109.47395 * 155.65411 * 1 2 3 31 31 H 1.07997 * 125.58336 * 0.02562 * 6 5 3 32 32 H 1.07994 * 124.72628 * 179.81949 * 8 7 6 33 33 H 1.09005 * 110.30708 * 21.58197 * 12 10 2 34 34 H 1.09000 * 110.39344 * 259.45484 * 12 10 2 35 35 H 1.09005 * 109.91704 * 241.87410 * 13 12 10 36 36 H 1.09001 * 109.91468 * 120.58287 * 13 12 10 37 37 H 1.09002 * 109.47039 * 297.59908 * 15 14 13 38 38 H 1.09002 * 109.46954 * 57.59975 * 15 14 13 39 39 H 0.96999 * 120.00203 * 359.97438 * 18 16 15 40 40 H 0.97001 * 119.99943 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.67017 * 157.64405 * 27 14 13 42 42 H 1.08999 * 110.66694 * 280.77435 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3514 1.1692 -0.0962 5 6 1.4073 2.4399 0.1164 6 6 2.0013 3.6481 -0.0081 7 16 0.8191 4.8669 0.1885 8 6 -0.3978 3.6943 0.4343 9 7 0.0960 2.5086 0.3604 10 6 2.1974 -1.2688 -0.0006 11 1 3.2725 -1.0918 -0.0308 12 6 1.8176 -2.1203 1.2325 13 6 1.7398 -3.5679 0.7132 14 7 2.0876 -3.5326 -0.7239 15 6 1.3275 -4.5408 -1.4746 16 6 1.6638 -4.4356 -2.9398 17 8 2.5519 -3.6952 -3.3064 18 7 0.9778 -5.1639 -3.8427 19 6 1.2835 -5.0676 -5.1757 20 1 2.0738 -4.4080 -5.5022 21 6 0.5765 -5.8190 -6.1065 22 7 -0.3847 -6.6220 -5.7091 23 14 0.9926 -5.6874 -7.9229 24 1 2.0291 -6.6935 -8.2674 25 1 -0.2285 -5.9383 -8.7298 26 1 1.5080 -4.3257 -8.2153 27 6 1.7551 -2.1612 -1.1874 28 1 -0.3633 0.1013 1.0227 29 1 -0.3633 0.8351 -0.5990 30 1 -0.3634 -0.9362 -0.4236 31 1 3.0505 3.8155 -0.2020 32 1 -1.4372 3.9169 0.6251 33 1 0.8503 -1.8068 1.6254 34 1 2.5837 -2.0355 2.0032 35 1 0.7286 -3.9545 0.8410 36 1 2.4506 -4.1944 1.2520 37 1 1.5874 -5.5356 -1.1127 38 1 0.2601 -4.3703 -1.3337 39 1 0.2678 -5.7561 -3.5495 40 1 -0.8779 -7.1468 -6.3589 41 1 2.3181 -1.9120 -2.0869 42 1 0.6838 -2.0638 -1.3635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318385021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:19 Heat of formation + Delta-G solvation = 9.205913 kcal Electronic energy + Delta-G solvation = -26764.069412 eV Core-core repulsion = 22872.197263 eV Total energy + Delta-G solvation = -3891.872149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94841 -39.52482 -38.49325 -37.43232 -35.22852 -33.87618 -31.55705 -31.12241 -30.81908 -28.64863 -27.06815 -26.74876 -25.86491 -24.21080 -22.96464 -20.99233 -20.41730 -19.58092 -19.17262 -18.64834 -17.84536 -16.88945 -16.57900 -15.94836 -15.86424 -15.69793 -15.17823 -14.61618 -14.53557 -14.21574 -14.15127 -13.79584 -13.72900 -13.62902 -13.08736 -13.01064 -12.70851 -12.55804 -12.25270 -12.09818 -11.88472 -11.50791 -11.45298 -11.35294 -11.14756 -10.84632 -10.57281 -10.38144 -10.23795 -10.20529 -10.12023 -9.92700 -9.47298 -9.40774 -8.65781 -8.40240 -8.01196 -7.91270 -6.40578 -3.81125 0.17060 0.87204 1.22433 1.68963 2.85933 3.13677 3.18946 3.27405 3.33518 3.74134 3.91979 4.09353 4.31966 4.49942 4.71804 4.78933 4.83303 4.94609 5.00428 5.15702 5.20001 5.26408 5.33644 5.46532 5.47127 5.58857 5.69854 5.80577 5.85042 5.92684 5.94134 6.10851 6.17086 6.28977 6.43482 6.57590 6.99875 7.17257 7.24239 7.29004 7.56649 8.01024 8.07742 8.63293 9.19642 9.55664 10.07781 10.77273 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014261 B = 0.002491 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.900940 B =11237.018912 C =12324.157979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.588 5.588 3 C 0.592 3.408 4 O -0.532 6.532 5 C 0.009 3.991 6 C -0.220 4.220 7 S 0.208 5.792 8 C -0.007 4.007 9 N -0.434 5.434 10 C 0.134 3.866 11 H 0.116 0.884 12 C -0.139 4.139 13 C 0.035 3.965 14 N -0.491 5.491 15 C 0.038 3.962 16 C 0.442 3.558 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.034 3.966 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.190 0.810 32 H 0.205 0.795 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.109 0.891 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 19.355 16.822 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.319 5.319 3 C 0.377 3.623 4 O -0.409 6.409 5 C -0.126 4.126 6 C -0.362 4.362 7 S 0.462 5.538 8 C -0.306 4.306 9 N -0.149 5.149 10 C 0.030 3.970 11 H 0.134 0.866 12 C -0.177 4.177 13 C -0.093 4.093 14 N -0.215 5.215 15 C -0.093 4.093 16 C 0.227 3.773 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.094 4.094 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.207 0.793 32 H 0.222 0.778 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.963 20.176 16.374 26.153 hybrid contribution -1.008 -1.213 -0.665 1.711 sum -3.971 18.964 15.709 24.943 Atomic orbital electron populations 1.22012 0.78370 1.02966 1.02423 1.47574 1.07705 1.05109 1.71535 1.17106 0.86194 0.82148 0.76847 1.90826 1.12982 1.86646 1.50425 1.20496 0.89268 0.94950 1.07862 1.26655 1.07165 0.95927 1.06501 1.82960 0.97983 1.11313 1.61511 1.28611 1.05749 0.90989 1.05262 1.67345 1.09873 1.23856 1.13874 1.22140 0.98426 0.81556 0.94835 0.86627 1.22746 1.02245 0.94782 0.97976 1.22896 0.99851 0.96341 0.90211 1.64482 1.53085 1.02930 1.01003 1.22090 0.95634 0.97075 0.94526 1.19720 0.85828 0.85166 0.86558 1.90512 1.33349 1.41671 1.80458 1.41863 1.32763 1.38987 1.06518 1.19700 1.17767 1.23948 0.81294 0.87923 1.25253 0.95952 0.96140 1.00610 1.69610 1.22270 1.26986 1.35556 0.85865 0.77730 0.78916 0.81839 1.20377 1.20959 1.19422 1.23619 0.99512 0.87598 0.98703 0.92328 0.89401 0.91531 0.79262 0.77806 0.91012 0.90601 0.93675 0.90071 0.88951 0.93466 0.77512 0.91903 0.87248 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 7.96 59.84 0.48 1.45 16 2 N -0.59 -8.18 2.89 -173.13 -0.50 -8.68 16 3 C 0.59 8.80 7.64 -12.59 -0.10 8.71 16 4 O -0.53 -9.42 16.11 5.26 0.08 -9.34 16 5 C 0.01 0.11 6.42 -84.52 -0.54 -0.44 16 6 C -0.22 -2.06 10.62 29.65 0.31 -1.75 16 7 S 0.21 1.17 22.96 -107.50 -2.47 -1.30 16 8 C -0.01 -0.04 12.18 51.43 0.63 0.58 16 9 N -0.43 -4.31 6.97 -12.36 -0.09 -4.40 16 10 C 0.13 2.01 3.46 -66.07 -0.23 1.78 16 11 H 0.12 1.96 7.00 -51.93 -0.36 1.60 16 12 C -0.14 -1.68 6.55 -25.37 -0.17 -1.85 16 13 C 0.04 0.46 6.70 -2.76 -0.02 0.45 16 14 N -0.49 -8.53 5.09 -231.89 -1.18 -9.70 16 15 C 0.04 0.70 5.28 -4.98 -0.03 0.68 16 16 C 0.44 10.61 7.40 -10.99 -0.08 10.53 16 17 O -0.58 -15.85 14.00 5.55 0.08 -15.77 16 18 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.03 0.59 5.14 -1.90 -0.01 0.58 16 28 H 0.06 0.60 8.01 -51.93 -0.42 0.18 16 29 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 30 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 31 H 0.19 1.66 8.04 -52.49 -0.42 1.24 16 32 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.07 0.78 7.12 -51.93 -0.37 0.41 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.05 0.78 7.99 -51.93 -0.42 0.36 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.11 2.35 6.52 -51.93 -0.34 2.01 16 42 H 0.04 0.74 6.00 -51.93 -0.31 0.43 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -34.38 357.98 -8.21 -42.59 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.18 Total: 10.76 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 0.01 Total: 12.68 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -1.10 Total: -61.29 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.16 Total: -25.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.47 Total: -1.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.38 -8.21 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318385021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.801 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds