Wall clock time and date at job start Tue Mar 31 2020 20:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34439 * 119.33297 * 2 1 4 4 O 1.21824 * 119.50591 * 359.69646 * 3 2 1 5 5 C 1.46070 * 120.99250 * 179.97438 * 3 2 1 6 6 C 1.36588 * 119.45778 * 359.97438 * 5 3 2 7 7 C 1.48252 * 120.74355 * 180.02562 * 6 5 3 8 8 O 1.21521 * 120.00404 * 174.35005 * 7 6 5 9 9 N 1.34777 * 119.99556 * 354.35881 * 7 6 5 10 10 C 1.40423 * 119.99723 * 185.36498 * 9 7 6 11 11 C 1.40697 * 126.09313 * 0.02562 * 10 9 7 12 12 N 1.30892 * 108.38109 * 179.97438 * 11 10 9 13 13 N 1.40067 * 108.42239 * 0.02562 * 12 11 10 14 14 C 1.37301 * 126.05797 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99969 * 185.02154 * 14 13 12 16 16 C 1.39007 * 120.00274 * 5.02001 * 14 13 12 17 17 N 1.31283 * 119.99571 * 354.95329 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 174.95427 * 16 14 13 19 19 H 1.48494 * 109.47093 * 94.99792 * 18 16 14 20 20 H 1.48501 * 109.47137 * 214.99684 * 18 16 14 21 21 H 1.48499 * 109.46899 * 334.99667 * 18 16 14 22 22 C 1.35747 * 126.09155 * 179.71479 * 10 9 7 23 23 C 1.47105 * 118.51858 * 0.03970 * 6 5 3 24 24 C 1.39814 * 120.69437 * 179.97438 * 23 6 5 25 25 C 1.36583 * 119.83039 * 179.97438 * 24 23 6 26 26 C 1.38850 * 120.52947 * 359.97438 * 25 24 23 27 27 C 1.37745 * 120.62712 * 359.97438 * 26 25 24 28 28 C 1.37845 * 119.33076 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46993 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47067 * 119.99983 * 1 2 3 31 31 H 1.09001 * 109.47462 * 240.00257 * 1 2 3 32 32 H 1.07997 * 120.26806 * 179.97438 * 5 3 2 33 33 H 0.96998 * 120.00378 * 5.36938 * 9 7 6 34 34 H 1.07997 * 125.80470 * 359.93130 * 11 10 9 35 35 H 0.97004 * 119.99667 * 180.02562 * 17 16 14 36 36 H 1.07994 * 126.24703 * 0.03914 * 22 10 9 37 37 H 1.07999 * 120.08190 * 359.97438 * 24 23 6 38 38 H 1.07999 * 119.73405 * 180.02562 * 25 24 23 39 39 H 1.08004 * 119.68270 * 180.02562 * 26 25 24 40 40 H 1.07996 * 120.08013 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1235 1.1720 0.0000 4 8 1.4932 2.2145 -0.0056 5 6 3.5836 1.2143 0.0006 6 6 4.2895 0.0450 0.0016 7 6 5.7720 0.0547 0.0028 8 8 6.3864 -0.9886 0.1073 9 7 6.4383 1.2206 -0.1119 10 6 7.8380 1.2212 -0.2243 11 6 8.6694 0.0861 -0.2318 12 7 9.9104 0.4843 -0.3527 13 7 9.9213 1.8830 -0.4262 14 6 11.0340 2.6767 -0.5578 15 1 10.9374 3.7518 -0.5235 16 6 12.2847 2.0965 -0.7350 17 7 12.4169 0.7916 -0.6776 18 14 13.7771 3.1735 -1.0547 19 1 14.4764 3.4435 0.2271 20 1 14.7007 2.4760 -1.9851 21 1 13.3405 4.4571 -1.6604 22 6 8.6296 2.3167 -0.3508 23 6 3.5459 -1.2243 0.0013 24 6 4.2225 -2.4478 0.0018 25 6 3.5144 -3.6157 0.0020 26 6 2.1260 -3.5988 0.0022 27 6 1.4387 -2.4051 0.0028 28 6 2.1402 -1.2017 0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 4.1007 2.1624 0.0001 33 1 5.9510 2.0593 -0.1169 34 1 8.3397 -0.9391 -0.1509 35 1 13.2898 0.3868 -0.8009 36 1 8.2979 3.3439 -0.3827 37 1 5.3023 -2.4693 0.0020 38 1 4.0386 -4.5600 0.0028 39 1 1.5797 -4.5305 0.0028 40 1 0.3588 -2.4022 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320811418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:50 Heat of formation + Delta-G solvation = 78.471078 kcal Electronic energy + Delta-G solvation = -27665.344144 eV Core-core repulsion = 23641.031607 eV Total energy + Delta-G solvation = -4024.312537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57510 -40.05281 -39.01492 -38.51845 -35.91425 -34.71492 -34.42191 -33.22928 -30.55867 -30.33676 -29.72704 -28.46189 -27.50411 -25.17158 -24.35404 -23.48301 -22.52734 -21.25882 -20.40345 -19.64040 -18.70067 -18.24516 -17.67759 -17.20931 -16.51831 -16.27170 -15.53092 -15.44386 -15.11883 -14.96883 -14.75588 -14.60447 -14.21139 -13.95906 -13.57192 -13.40403 -13.32919 -13.20612 -13.00677 -12.94084 -12.55038 -11.75771 -11.73612 -11.60511 -11.42336 -11.31394 -10.98366 -10.71842 -10.64040 -10.56636 -10.51808 -10.28671 -9.27101 -9.21542 -8.90057 -8.76414 -8.17489 -8.15002 -6.81074 -6.63242 -4.29885 0.08675 0.99840 1.42058 2.35226 2.65522 2.90806 3.01536 3.07468 3.12724 3.24386 3.59232 3.79757 3.81979 4.06531 4.27322 4.34431 4.43902 4.62517 4.75523 4.84687 4.93707 4.94398 4.95107 5.04890 5.13898 5.31436 5.38555 5.43293 5.55324 5.79748 5.84326 6.09766 6.17086 6.31784 6.37084 6.40101 6.61346 6.77706 6.86459 6.90203 7.00519 7.14690 7.64932 7.77380 7.98268 8.15899 8.47314 8.67244 9.28787 9.57377 10.32728 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.002470 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.670401 B =11333.266436 C =12546.375673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.522 5.522 3 C 0.536 3.464 4 O -0.532 6.532 5 C -0.178 4.178 6 C -0.015 4.015 7 C 0.536 3.464 8 O -0.520 6.520 9 N -0.603 5.603 10 C -0.067 4.067 11 C -0.026 4.026 12 N -0.261 5.261 13 N -0.139 5.139 14 C -0.322 4.322 15 H 0.118 0.882 16 C 0.047 3.953 17 N -0.767 5.767 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.080 4.080 23 C -0.106 4.106 24 C -0.051 4.051 25 C -0.156 4.156 26 C -0.065 4.065 27 C -0.173 4.173 28 C 0.181 3.819 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.399 0.601 34 H 0.178 0.822 35 H 0.276 0.724 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 -4.865 0.795 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.239 5.239 3 C 0.331 3.669 4 O -0.412 6.412 5 C -0.200 4.200 6 C -0.021 4.021 7 C 0.322 3.678 8 O -0.398 6.398 9 N -0.244 5.244 10 C -0.173 4.173 11 C -0.201 4.201 12 N -0.092 5.092 13 N 0.095 4.905 14 C -0.454 4.454 15 H 0.135 0.865 16 C -0.171 4.171 17 N -0.393 5.393 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.231 4.231 23 C -0.109 4.109 24 C -0.068 4.068 25 C -0.175 4.175 26 C -0.084 4.084 27 C -0.194 4.194 28 C 0.081 3.919 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.176 0.824 33 H 0.234 0.766 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.192 0.808 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.610 -5.452 0.751 19.406 hybrid contribution -0.645 1.243 -0.075 1.402 sum -19.255 -4.209 0.676 19.721 Atomic orbital electron populations 1.22057 0.77396 1.05780 1.02811 1.45057 1.08538 1.05092 1.65254 1.18192 0.88628 0.82669 0.77388 1.90881 1.68728 1.30953 1.50597 1.23524 0.92126 0.99130 1.05269 1.21325 0.93771 0.92822 0.94154 1.17831 0.85587 0.84265 0.80117 1.90482 1.67916 1.31155 1.50265 1.42375 1.05798 1.07768 1.68472 1.17220 0.81027 0.94588 1.24417 1.24126 0.90040 0.98753 1.07229 1.78271 1.17149 0.88271 1.25464 1.44566 1.03192 1.04542 1.38236 1.19920 0.83286 0.90271 1.51942 0.86463 1.25666 0.99691 0.96254 0.95494 1.70211 1.24928 1.09476 1.34673 0.85801 0.79824 0.79618 0.78886 1.19593 1.19986 1.18686 1.21288 0.85325 0.97126 1.19377 1.18276 0.89774 0.93274 1.09573 1.22107 1.03764 0.89857 0.91118 1.20983 0.93878 0.98919 1.03744 1.21176 0.94599 0.97297 0.95313 1.20711 0.99868 0.90376 1.08413 1.17897 0.90604 0.85652 0.97754 0.88035 0.90632 0.90635 0.82367 0.76609 0.80564 0.91347 0.83473 0.80795 0.85235 0.85333 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 9.20 59.84 0.55 1.02 16 2 N -0.52 -5.87 3.03 -122.54 -0.37 -6.24 16 3 C 0.54 7.19 7.58 -13.27 -0.10 7.09 16 4 O -0.53 -8.30 16.30 5.08 0.08 -8.22 16 5 C -0.18 -2.26 9.70 -37.04 -0.36 -2.62 16 6 C -0.01 -0.21 6.04 -102.78 -0.62 -0.83 16 7 C 0.54 9.06 7.73 -12.14 -0.09 8.96 16 8 O -0.52 -10.02 10.73 5.35 0.06 -9.96 16 9 N -0.60 -10.36 5.41 -10.74 -0.06 -10.42 16 10 C -0.07 -1.48 6.90 -83.88 -0.58 -2.06 16 11 C -0.03 -0.65 10.85 -17.02 -0.18 -0.83 16 12 N -0.26 -7.34 10.41 30.81 0.32 -7.02 16 13 N -0.14 -3.70 3.73 -11.40 -0.04 -3.74 16 14 C -0.32 -8.30 10.24 -14.82 -0.15 -8.45 16 15 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 16 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 17 N -0.77 -20.91 11.83 55.50 0.66 -20.25 16 18 Si 0.94 18.50 29.55 -169.99 -5.02 13.47 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.08 -1.82 11.50 -16.38 -0.19 -2.00 16 23 C -0.11 -1.39 5.89 -104.82 -0.62 -2.01 16 24 C -0.05 -0.65 9.28 -39.59 -0.37 -1.02 16 25 C -0.16 -1.56 9.97 -39.95 -0.40 -1.96 16 26 C -0.07 -0.53 10.02 -39.54 -0.40 -0.93 16 27 C -0.17 -1.51 9.26 -39.37 -0.36 -1.87 16 28 C 0.18 2.05 6.53 -83.89 -0.55 1.50 16 29 H 0.10 0.87 6.80 -51.93 -0.35 0.52 16 30 H 0.08 0.44 7.91 -51.93 -0.41 0.02 16 31 H 0.08 0.43 7.90 -51.93 -0.41 0.02 16 32 H 0.16 1.70 6.46 -52.49 -0.34 1.36 16 33 H 0.40 5.40 6.94 -40.82 -0.28 5.11 16 34 H 0.18 4.29 5.93 -52.49 -0.31 3.98 16 35 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.18 2.56 4.98 -52.49 -0.26 2.30 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.79 6.67 -52.49 -0.35 0.43 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -33.55 342.40 -7.27 -40.82 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -3.53 Total: 11.33 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -4.51 Total: -4.93 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.50 Total: -47.67 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.14 Total: -18.18 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -7.27 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320811418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.287 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds