Wall clock time and date at job start Tue Mar 31 2020 20:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34439 * 119.33297 * 2 1 4 4 O 1.21824 * 119.50591 * 359.69646 * 3 2 1 5 5 C 1.46070 * 120.99250 * 179.97438 * 3 2 1 6 6 C 1.36588 * 119.45778 * 359.97438 * 5 3 2 7 7 C 1.48252 * 120.74355 * 180.02562 * 6 5 3 8 8 O 1.21521 * 120.00404 * 174.35005 * 7 6 5 9 9 N 1.34777 * 119.99556 * 354.35881 * 7 6 5 10 10 C 1.40423 * 119.99723 * 185.36498 * 9 7 6 11 11 C 1.40697 * 126.09313 * 0.02562 * 10 9 7 12 12 N 1.30892 * 108.38109 * 179.97438 * 11 10 9 13 13 N 1.40067 * 108.42239 * 0.02562 * 12 11 10 14 14 C 1.37301 * 126.05797 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99969 * 185.02154 * 14 13 12 16 16 C 1.39007 * 120.00274 * 5.02001 * 14 13 12 17 17 N 1.31283 * 119.99571 * 354.95329 * 16 14 13 18 18 Si 1.86798 * 120.00122 * 174.95427 * 16 14 13 19 19 H 1.48494 * 109.47093 * 94.99792 * 18 16 14 20 20 H 1.48501 * 109.47137 * 214.99684 * 18 16 14 21 21 H 1.48499 * 109.46899 * 334.99667 * 18 16 14 22 22 C 1.35747 * 126.09155 * 179.71479 * 10 9 7 23 23 C 1.47105 * 118.51858 * 0.03970 * 6 5 3 24 24 C 1.39814 * 120.69437 * 179.97438 * 23 6 5 25 25 C 1.36583 * 119.83039 * 179.97438 * 24 23 6 26 26 C 1.38850 * 120.52947 * 359.97438 * 25 24 23 27 27 C 1.37745 * 120.62712 * 359.97438 * 26 25 24 28 28 C 1.37845 * 119.33076 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46993 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47067 * 119.99983 * 1 2 3 31 31 H 1.09001 * 109.47462 * 240.00257 * 1 2 3 32 32 H 1.07997 * 120.26806 * 179.97438 * 5 3 2 33 33 H 0.96998 * 120.00378 * 5.36938 * 9 7 6 34 34 H 1.07997 * 125.80470 * 359.93130 * 11 10 9 35 35 H 0.97004 * 119.99667 * 180.02562 * 17 16 14 36 36 H 1.07994 * 126.24703 * 0.03914 * 22 10 9 37 37 H 1.07999 * 120.08190 * 359.97438 * 24 23 6 38 38 H 1.07999 * 119.73405 * 180.02562 * 25 24 23 39 39 H 1.08004 * 119.68270 * 180.02562 * 26 25 24 40 40 H 1.07996 * 120.08013 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1235 1.1720 0.0000 4 8 1.4932 2.2145 -0.0056 5 6 3.5836 1.2143 0.0006 6 6 4.2895 0.0450 0.0016 7 6 5.7720 0.0547 0.0028 8 8 6.3864 -0.9886 0.1073 9 7 6.4383 1.2206 -0.1119 10 6 7.8380 1.2212 -0.2243 11 6 8.6694 0.0861 -0.2318 12 7 9.9104 0.4843 -0.3527 13 7 9.9213 1.8830 -0.4262 14 6 11.0340 2.6767 -0.5578 15 1 10.9374 3.7518 -0.5235 16 6 12.2847 2.0965 -0.7350 17 7 12.4169 0.7916 -0.6776 18 14 13.7771 3.1735 -1.0547 19 1 14.4764 3.4435 0.2271 20 1 14.7007 2.4760 -1.9851 21 1 13.3405 4.4571 -1.6604 22 6 8.6296 2.3167 -0.3508 23 6 3.5459 -1.2243 0.0013 24 6 4.2225 -2.4478 0.0018 25 6 3.5144 -3.6157 0.0020 26 6 2.1260 -3.5988 0.0022 27 6 1.4387 -2.4051 0.0028 28 6 2.1402 -1.2017 0.0005 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 4.1007 2.1624 0.0001 33 1 5.9510 2.0593 -0.1169 34 1 8.3397 -0.9391 -0.1509 35 1 13.2898 0.3868 -0.8009 36 1 8.2979 3.3439 -0.3827 37 1 5.3023 -2.4693 0.0020 38 1 4.0386 -4.5600 0.0028 39 1 1.5797 -4.5305 0.0028 40 1 0.3588 -2.4022 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320811418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:49 Heat of formation + Delta-G solvation = 56.711582 kcal Electronic energy + Delta-G solvation = -27666.287706 eV Core-core repulsion = 23641.031607 eV Total energy + Delta-G solvation = -4025.256100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53811 -41.72456 -40.42667 -39.59593 -36.82805 -36.11729 -35.73436 -34.92172 -32.27576 -31.37186 -30.66294 -29.80797 -28.71918 -26.88171 -25.47320 -24.45285 -23.47299 -22.95738 -21.82593 -21.34480 -19.69996 -19.51396 -18.82237 -18.60425 -17.60915 -17.35897 -17.16754 -16.88996 -16.30969 -16.12812 -15.94178 -15.66121 -15.53567 -15.13143 -14.99831 -14.80268 -14.57404 -14.41785 -14.03651 -13.82823 -13.50264 -13.36188 -13.18461 -12.93335 -12.87231 -12.49621 -12.33694 -12.08260 -11.97224 -11.61195 -11.57714 -11.48386 -11.05872 -10.84576 -10.57438 -10.12407 -9.61304 -9.03935 -8.59140 -8.48817 -6.25613 -0.92063 0.12297 0.53405 1.24295 1.40260 1.52025 1.53050 1.58325 1.79878 1.84312 2.04810 2.17612 2.51406 2.81361 2.91679 3.07453 3.11684 3.36174 3.57273 3.84946 3.93626 4.20187 4.29163 4.37132 4.42161 4.44508 4.45847 4.55347 4.57942 4.68939 4.80263 4.94407 4.99442 5.01788 5.06522 5.24453 5.30277 5.37292 5.52419 5.62889 5.79237 5.93671 6.02993 6.26614 6.53483 6.68272 6.71048 7.15818 7.43155 7.64818 8.50684 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.002470 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.670401 B =11333.266436 C =12546.375673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.516 5.516 3 C 0.528 3.472 4 O -0.561 6.561 5 C -0.167 4.167 6 C -0.023 4.023 7 C 0.539 3.461 8 O -0.544 6.544 9 N -0.600 5.600 10 C -0.051 4.051 11 C -0.050 4.050 12 N -0.309 5.309 13 N -0.166 5.166 14 C -0.354 4.354 15 H 0.141 0.859 16 C -0.005 4.005 17 N -0.822 5.822 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.244 1.244 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.080 4.080 25 C -0.153 4.153 26 C -0.054 4.054 27 C -0.160 4.160 28 C 0.171 3.829 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.174 0.826 33 H 0.418 0.582 34 H 0.174 0.826 35 H 0.277 0.723 36 H 0.188 0.812 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.170 0.830 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.110 -4.599 0.679 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.233 5.233 3 C 0.324 3.676 4 O -0.442 6.442 5 C -0.190 4.190 6 C -0.029 4.029 7 C 0.327 3.673 8 O -0.423 6.423 9 N -0.245 5.245 10 C -0.157 4.157 11 C -0.225 4.225 12 N -0.141 5.141 13 N 0.066 4.934 14 C -0.485 4.485 15 H 0.158 0.842 16 C -0.217 4.217 17 N -0.449 5.449 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.167 1.167 22 C -0.227 4.227 23 C -0.132 4.132 24 C -0.098 4.098 25 C -0.172 4.172 26 C -0.072 4.072 27 C -0.180 4.180 28 C 0.071 3.929 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.191 0.809 33 H 0.256 0.744 34 H 0.191 0.809 35 H 0.087 0.913 36 H 0.205 0.795 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -21.728 -5.190 0.642 22.348 hybrid contribution 0.012 0.988 -0.003 0.988 sum -21.716 -4.202 0.639 22.128 Atomic orbital electron populations 1.22374 0.75052 1.05958 1.05319 1.45161 1.10003 1.04410 1.63714 1.18217 0.88646 0.83112 0.77601 1.90871 1.69106 1.31912 1.52354 1.23716 0.92385 0.99282 1.03569 1.21041 0.91556 0.94156 0.96121 1.18370 0.86976 0.83561 0.78380 1.90498 1.69008 1.32178 1.50662 1.42280 1.03891 1.09094 1.69201 1.17250 0.83082 0.93312 1.22022 1.24224 0.90333 0.99605 1.08386 1.78159 1.18788 0.90012 1.27129 1.44834 1.04660 1.04099 1.39790 1.20624 0.83763 0.91404 1.52670 0.84186 1.26869 1.02910 0.97532 0.94393 1.70383 1.25793 1.11892 1.36873 0.84592 0.75036 0.77934 0.78751 1.18982 1.20146 1.16734 1.22005 0.84249 0.99028 1.17429 1.18390 0.91004 0.92772 1.11007 1.21905 1.02712 0.91263 0.93969 1.21253 0.95175 0.98434 1.02300 1.21620 0.93678 0.98896 0.93026 1.21177 1.01648 0.89126 1.06020 1.18071 0.89878 0.86610 0.98363 0.89150 0.88074 0.88045 0.80864 0.74354 0.80927 0.91302 0.79484 0.83690 0.83656 0.81273 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 9.20 127.77 1.18 1.80 16 2 N -0.52 -10.40 3.03 -659.97 -2.00 -12.40 16 3 C 0.53 13.53 7.58 86.33 0.65 14.18 16 4 O -0.56 -16.93 16.30 -4.74 -0.08 -17.01 16 5 C -0.17 -4.13 9.70 23.92 0.23 -3.90 16 6 C -0.02 -0.64 6.04 -18.67 -0.11 -0.75 16 7 C 0.54 18.75 7.73 86.91 0.67 19.43 16 8 O -0.54 -22.20 10.73 -3.78 -0.04 -22.24 16 9 N -0.60 -20.71 5.41 -306.19 -1.66 -22.37 16 10 C -0.05 -2.28 6.90 37.79 0.26 -2.02 16 11 C -0.05 -2.65 10.85 85.43 0.93 -1.72 16 12 N -0.31 -18.32 10.41 -56.44 -0.59 -18.91 16 13 N -0.17 -9.07 3.73 -189.99 -0.71 -9.78 16 14 C -0.35 -18.52 10.24 84.02 0.86 -17.66 16 15 H 0.14 6.36 7.84 -2.91 -0.02 6.34 16 16 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 17 N -0.82 -46.89 11.83 21.66 0.26 -46.63 16 18 Si 1.02 38.22 29.55 68.60 2.03 40.25 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.24 -8.33 7.11 99.48 0.71 -7.63 16 22 C -0.08 -3.48 11.50 83.39 0.96 -2.52 16 23 C -0.13 -3.34 5.89 -20.00 -0.12 -3.45 16 24 C -0.08 -2.08 9.28 22.26 0.21 -1.87 16 25 C -0.15 -2.77 9.97 22.03 0.22 -2.55 16 26 C -0.05 -0.65 10.02 22.30 0.22 -0.43 16 27 C -0.16 -2.07 9.26 22.40 0.21 -1.86 16 28 C 0.17 3.45 6.53 39.02 0.25 3.71 16 29 H 0.09 1.35 6.80 -2.38 -0.02 1.33 16 30 H 0.10 0.71 7.91 -2.39 -0.02 0.69 16 31 H 0.10 0.70 7.90 -2.39 -0.02 0.69 16 32 H 0.17 3.54 6.46 -2.91 -0.02 3.52 16 33 H 0.42 10.93 6.94 -92.71 -0.64 10.28 16 34 H 0.17 9.03 5.93 -2.91 -0.02 9.02 16 35 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.19 6.73 8.06 -2.91 -0.02 6.70 16 37 H 0.15 4.60 4.98 -2.91 -0.01 4.58 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.17 0.94 6.67 -2.91 -0.02 0.92 16 Total: -1.00 -78.80 342.40 4.79 -74.01 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.49 Total: 34.49 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 7.09 Total: 0.59 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.70 Total: -110.09 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.12 Total: -39.25 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -78.80 4.79 -74.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320811418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.721 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds