Wall clock time and date at job start Tue Mar 31 2020 20:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99768 * 2 1 4 4 O 1.21355 * 120.00009 * 185.16725 * 3 2 1 5 5 C 1.49341 * 119.99685 * 5.16290 * 3 2 1 6 6 O 1.21388 * 120.00328 * 354.75333 * 5 3 2 7 7 N 1.34780 * 119.99972 * 174.74735 * 5 3 2 8 8 C 1.39931 * 120.00219 * 179.97438 * 7 5 3 9 9 C 1.40456 * 125.98141 * 0.29931 * 8 7 5 10 10 C 1.35216 * 107.86704 * 180.11327 * 9 8 7 11 11 N 1.34988 * 107.87588 * 359.61651 * 10 9 8 12 12 C 1.46495 * 125.96943 * 180.20904 * 11 10 9 13 13 C 1.50702 * 109.47269 * 125.00129 * 12 11 10 14 14 H 1.07997 * 119.99583 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00023 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00027 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47090 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47453 * 120.00220 * 17 15 13 20 20 H 1.48503 * 109.47231 * 239.99987 * 17 15 13 21 21 N 1.31272 * 125.98026 * 179.97438 * 8 7 5 22 22 C 1.46498 * 120.00069 * 179.97438 * 2 1 3 23 23 H 1.09006 * 108.85003 * 172.97558 * 22 2 1 24 24 C 1.52938 * 108.89066 * 291.41374 * 22 2 1 25 25 C 1.55149 * 108.96297 * 90.69361 * 24 22 2 26 26 S 1.83995 * 100.90696 * 41.43858 * 25 24 22 27 27 C 1.53703 * 108.88919 * 54.39752 * 22 2 1 28 28 H 1.08996 * 109.47279 * 55.26400 * 1 2 3 29 29 H 1.09007 * 109.46416 * 175.25675 * 1 2 3 30 30 H 1.08994 * 109.47593 * 295.25985 * 1 2 3 31 31 H 0.97007 * 119.99707 * 0.02562 * 7 5 3 32 32 H 1.07999 * 126.06415 * 359.97354 * 9 8 7 33 33 H 1.07996 * 126.05720 * 179.88405 * 10 9 8 34 34 H 1.09003 * 109.46779 * 244.99853 * 12 11 10 35 35 H 1.09000 * 109.47439 * 4.99494 * 12 11 10 36 36 H 0.96997 * 120.00102 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.60933 * 210.62807 * 24 22 2 38 38 H 1.09007 * 109.60337 * 330.76545 * 24 22 2 39 39 H 1.09003 * 111.13145 * 283.53229 * 25 24 22 40 40 H 1.08996 * 111.13472 * 159.34916 * 25 24 22 41 41 H 1.08994 * 110.34109 * 0.90251 * 27 22 2 42 42 H 1.09005 * 110.33976 * 123.04792 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3487 1.1695 -0.0947 5 6 1.3966 2.4579 0.1164 6 8 0.1827 2.4623 0.1151 7 7 2.0745 3.6179 0.2230 8 6 1.3790 4.8273 0.3316 9 6 -0.0174 4.9776 0.3485 10 6 -0.2913 6.2968 0.4630 11 7 0.8828 6.9599 0.5255 12 6 1.0463 8.4097 0.6574 13 6 1.9100 8.7109 1.8551 14 1 2.2979 7.9032 2.4579 15 6 2.2048 10.0177 2.1812 16 7 1.7327 11.0013 1.4468 17 14 3.2748 10.3911 3.6661 18 1 3.6751 9.1194 4.3201 19 1 4.4884 11.1272 3.2293 20 1 2.5111 11.2238 4.6298 21 7 1.9175 6.0195 0.4413 22 6 2.1975 -1.2687 0.0006 23 1 3.2603 -1.0618 -0.1257 24 6 1.9876 -1.9611 1.3480 25 6 0.7457 -2.8860 1.2515 26 16 0.9908 -3.6251 -0.4156 27 6 1.7132 -2.1235 -1.1815 28 1 -0.3633 0.5855 -0.8445 29 1 -0.3632 -1.0242 -0.0850 30 1 -0.3634 0.4385 0.9293 31 1 3.0446 3.6145 0.2238 32 1 -0.7434 4.1810 0.2798 33 1 -1.2750 6.7406 0.5023 34 1 1.5202 8.8051 -0.2410 35 1 0.0693 8.8751 0.7877 36 1 1.9405 11.9206 1.6759 37 1 2.8675 -2.5549 1.5951 38 1 1.8261 -1.2117 2.1230 39 1 -0.1782 -2.3091 1.2935 40 1 0.7645 -3.6514 2.0272 41 1 0.9549 -1.5868 -1.7515 42 1 2.5517 -2.3902 -1.8249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320870713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:01 Heat of formation + Delta-G solvation = 15.402165 kcal Electronic energy + Delta-G solvation = -26366.490660 eV Core-core repulsion = 22474.887201 eV Total energy + Delta-G solvation = -3891.603459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53204 -41.75114 -39.96187 -38.35860 -36.45642 -35.33957 -34.27920 -32.83489 -31.01463 -30.63735 -28.86871 -28.36264 -26.98426 -25.33459 -24.52324 -22.95407 -22.00375 -21.15906 -20.43120 -19.01016 -18.71023 -18.40878 -18.05401 -17.77911 -17.42084 -17.08256 -16.65578 -16.17460 -16.04274 -15.64706 -15.42159 -15.28798 -14.75065 -14.59888 -14.26557 -14.21373 -13.88177 -13.87242 -13.73276 -13.46359 -13.13569 -12.96693 -12.94183 -12.76868 -12.57416 -12.51796 -12.32785 -12.25330 -12.11802 -11.62686 -11.42027 -11.00951 -10.73390 -10.58146 -10.04820 -9.81694 -9.20548 -8.76430 -8.34532 -6.47921 0.01545 0.71843 0.86332 1.12866 1.29789 1.36475 1.38707 1.51022 1.71956 1.75388 2.24383 2.31644 2.43309 2.97815 3.05561 3.31198 3.69235 3.83679 3.90132 3.92516 4.10182 4.17905 4.22896 4.52125 4.53874 4.62397 4.63739 4.76923 4.83614 4.84861 4.88197 4.91398 4.96486 5.00816 5.04385 5.21037 5.55676 5.70049 5.78472 5.79832 5.99306 6.25199 6.43089 6.63675 6.71549 6.97341 7.22113 8.73489 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028190 B = 0.002035 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.016842 B =13752.683037 C =14171.604450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.572 5.572 3 C 0.522 3.478 4 O -0.535 6.535 5 C 0.516 3.484 6 O -0.495 6.495 7 N -0.602 5.602 8 C 0.259 3.741 9 C -0.285 4.285 10 C 0.059 3.941 11 N -0.340 5.340 12 C 0.271 3.729 13 C -0.547 4.547 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.919 5.919 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.269 1.269 21 N -0.344 5.344 22 C 0.130 3.870 23 H 0.113 0.887 24 C -0.131 4.131 25 C -0.062 4.062 26 S -0.319 6.319 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.426 0.574 32 H 0.179 0.821 33 H 0.206 0.794 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.273 0.727 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -28.145 -1.978 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.306 5.306 3 C 0.304 3.696 4 O -0.412 6.412 5 C 0.297 3.703 6 O -0.368 6.368 7 N -0.252 5.252 8 C 0.005 3.995 9 C -0.315 4.315 10 C -0.089 4.089 11 N -0.122 5.122 12 C 0.152 3.848 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.795 3.205 18 H -0.200 1.200 19 H -0.200 1.200 20 H -0.194 1.194 21 N -0.175 5.175 22 C 0.027 3.973 23 H 0.131 0.869 24 C -0.171 4.171 25 C -0.209 4.209 26 S -0.094 6.094 27 C -0.220 4.220 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.196 0.804 33 H 0.223 0.777 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.824 -28.314 -2.440 28.675 hybrid contribution 0.600 1.450 0.838 1.779 sum -3.224 -26.864 -1.601 27.104 Atomic orbital electron populations 1.22232 0.76297 1.03705 1.04220 1.47965 1.08940 1.04057 1.69620 1.19595 0.86859 0.84780 0.78377 1.90787 1.14107 1.87042 1.49251 1.20213 0.87655 0.84519 0.77944 1.90691 1.13203 1.86416 1.46490 1.42132 1.11418 1.02004 1.69613 1.19318 0.91961 0.85925 1.02273 1.21753 0.93591 0.96671 1.19531 1.23262 0.92876 0.92616 1.00184 1.48896 1.02774 1.07539 1.53019 1.19384 0.98858 0.69439 0.97091 1.21417 1.32515 0.92680 1.11864 0.93023 1.25721 0.97046 0.95456 0.99988 1.69992 1.45560 1.00109 1.40157 0.85314 0.78473 0.78047 0.78663 1.20014 1.19975 1.19406 1.77320 1.14270 0.96581 1.29300 1.21992 0.98923 0.81932 0.94480 0.86908 1.22743 0.99215 0.99288 0.95847 1.24592 1.01075 1.01064 0.94169 1.88186 1.83097 1.22907 1.15235 1.24344 1.04324 0.94092 0.99266 0.90661 0.88847 0.90654 0.73581 0.80395 0.77703 0.96008 0.91918 0.91830 0.87812 0.89052 0.87875 0.85692 0.87858 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 7.57 127.77 0.97 1.96 16 2 N -0.57 -8.92 2.58 -823.08 -2.12 -11.04 16 3 C 0.52 11.57 7.73 87.23 0.67 12.25 16 4 O -0.53 -13.99 15.81 -3.26 -0.05 -14.04 16 5 C 0.52 13.58 7.77 87.23 0.68 14.25 16 6 O -0.50 -13.27 10.38 -3.36 -0.03 -13.30 16 7 N -0.60 -18.71 5.43 -308.89 -1.68 -20.39 16 8 C 0.26 9.96 8.10 133.40 1.08 11.04 16 9 C -0.28 -10.05 9.60 22.11 0.21 -9.83 16 10 C 0.06 2.16 11.43 83.51 0.95 3.11 16 11 N -0.34 -15.45 3.67 -351.85 -1.29 -16.74 16 12 C 0.27 13.74 6.26 85.63 0.54 14.28 16 13 C -0.55 -30.49 9.24 25.60 0.24 -30.25 16 14 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 15 C 0.02 1.00 5.46 84.65 0.46 1.47 16 16 N -0.92 -51.54 13.29 21.45 0.28 -51.26 16 17 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 N -0.34 -15.77 12.42 -54.54 -0.68 -16.44 16 22 C 0.13 1.60 3.01 45.21 0.14 1.73 16 23 H 0.11 1.65 6.87 -2.38 -0.02 1.63 16 24 C -0.13 -1.17 5.78 31.31 0.18 -0.99 16 25 C -0.06 -0.47 6.80 72.72 0.49 0.03 16 26 S -0.32 -4.00 23.10 -56.49 -1.30 -5.30 16 27 C -0.07 -0.78 6.40 72.22 0.46 -0.32 16 28 H 0.07 1.12 7.11 -2.39 -0.02 1.11 16 29 H 0.09 0.83 4.97 -2.38 -0.01 0.82 16 30 H 0.07 1.05 7.37 -2.39 -0.02 1.03 16 31 H 0.43 12.47 8.30 -92.70 -0.77 11.70 16 32 H 0.18 5.60 5.91 -2.91 -0.02 5.59 16 33 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 34 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 36 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.88 8.02 -2.38 -0.02 0.86 16 39 H 0.10 0.66 6.48 -2.39 -0.02 0.64 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.10 1.13 7.00 -2.39 -0.02 1.11 16 42 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -67.15 359.54 2.53 -64.62 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.31 Total: 19.74 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 7.08 Total: 18.72 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -5.49 Total: -115.87 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.09 Total: -27.35 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.30 Total: -5.30 kcal Total: -67.15 2.53 -64.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320870713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.020 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds