Wall clock time and date at job start Tue Mar 31 2020 20:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34773 * 119.99867 * 2 1 4 4 O 1.21274 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99895 * 0.02562 * 3 2 1 6 6 C 1.50708 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.33634 * 126.03690 * 89.71372 * 6 5 3 8 8 N 1.31788 * 114.49907 * 179.78738 * 7 6 5 9 9 C 1.29019 * 117.12091 * 0.52558 * 8 7 6 10 10 S 1.70973 * 110.16968 * 359.70915 * 9 8 7 11 11 C 1.46496 * 119.99811 * 180.02562 * 2 1 3 12 12 C 1.53513 * 114.17158 * 299.99513 * 11 2 1 13 13 N 1.47484 * 87.93060 * 87.81542 * 12 11 2 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46681 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 120.00010 * 22 20 18 25 25 H 1.48501 * 109.47100 * 240.00460 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.09000 * 109.46801 * 269.99905 * 1 2 3 28 28 H 1.09002 * 109.46804 * 29.99678 * 1 2 3 29 29 H 1.08996 * 109.46738 * 149.99572 * 1 2 3 30 30 H 1.08998 * 109.47492 * 299.99311 * 5 3 2 31 31 H 1.08999 * 109.47282 * 60.00032 * 5 3 2 32 32 H 1.08005 * 122.75514 * 359.97438 * 7 6 5 33 33 H 1.08008 * 124.91575 * 179.68223 * 9 8 7 34 34 H 1.09001 * 113.25341 * 167.05391 * 11 2 1 35 35 H 1.09005 * 113.47855 * 333.05418 * 12 11 2 36 36 H 1.08997 * 113.47719 * 202.58442 * 12 11 2 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6178 -0.0002 7 6 2.8788 4.2119 -1.0812 8 7 3.7137 5.1971 -0.8183 9 6 3.9404 5.4602 0.4243 10 16 3.0398 4.4053 1.4240 11 6 2.1975 -1.2687 -0.0006 12 6 1.9054 -2.1637 1.2120 13 7 0.7753 -2.7314 0.4533 14 6 0.6943 -4.1863 0.6395 15 6 -0.5999 -4.6957 0.0589 16 8 -1.3778 -3.9228 -0.4593 17 7 -0.8900 -6.0108 0.1103 18 6 -2.0670 -6.4743 -0.4182 19 1 -2.7619 -5.7854 -0.8754 20 6 -2.3659 -7.8302 -0.3658 21 7 -1.5201 -8.6684 0.1900 22 14 -3.9700 -8.4617 -1.0854 23 1 -4.7411 -7.3246 -1.6490 24 1 -3.6777 -9.4426 -2.1612 25 1 -4.7660 -9.1197 -0.0183 26 6 1.5089 -2.3967 -0.7815 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7584 2.5303 -0.8892 31 1 0.7591 2.5298 0.8908 32 1 2.6283 3.9113 -2.0879 33 1 4.6034 6.2344 0.7813 34 1 3.2580 -1.1533 -0.2249 35 1 1.5981 -1.6080 2.0979 36 1 2.6955 -2.8854 1.4194 37 1 0.7316 -4.4191 1.7036 38 1 1.5327 -4.6647 0.1333 39 1 -0.2657 -6.6296 0.5206 40 1 -1.7289 -9.6150 0.2270 41 1 2.1931 -3.1806 -1.1063 42 1 0.8656 -2.0384 -1.5852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323945757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:32 Heat of formation + Delta-G solvation = 33.413833 kcal Electronic energy + Delta-G solvation = -26065.150088 eV Core-core repulsion = 22174.327673 eV Total energy + Delta-G solvation = -3890.822415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97656 -39.96729 -39.02842 -37.75317 -34.96495 -33.91023 -33.09073 -31.29837 -30.15147 -28.07085 -27.11162 -26.00746 -25.51462 -24.83083 -23.47755 -21.18414 -20.21248 -19.33125 -18.73695 -18.26425 -17.96478 -17.40583 -16.48200 -16.12792 -16.01948 -15.53563 -15.23487 -15.01588 -14.64932 -14.46369 -14.21741 -13.96037 -13.73864 -13.58168 -13.29987 -13.13213 -12.91142 -12.66265 -12.48451 -12.08121 -11.99243 -11.62155 -11.54044 -11.43519 -11.12338 -10.99088 -10.77796 -10.36914 -10.24730 -10.15284 -9.93955 -9.53688 -9.51378 -9.19248 -8.86852 -8.74040 -8.24543 -7.98838 -6.44246 -3.85087 0.40548 1.07256 1.46143 2.37671 2.51625 2.84306 3.13995 3.24685 3.31518 3.87116 3.94614 4.03662 4.19976 4.30476 4.37346 4.48862 4.68312 4.80119 4.94972 4.96036 4.99712 5.15490 5.22687 5.33046 5.37315 5.39211 5.52615 5.59465 5.61305 5.69078 5.75288 5.85236 5.87787 6.06932 6.22591 6.43241 6.46265 7.05194 7.25581 7.41439 7.52727 7.95562 8.03532 8.59103 9.15857 9.52127 10.03842 10.73621 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.001846 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.668922 B =15160.212840 C =15462.157590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.586 5.586 3 C 0.516 3.484 4 O -0.535 6.535 5 C -0.062 4.062 6 C -0.198 4.198 7 C 0.043 3.957 8 N -0.471 5.471 9 C 0.014 3.986 10 S 0.134 5.866 11 C 0.115 3.885 12 C -0.017 4.017 13 N -0.437 5.437 14 C 0.007 3.993 15 C 0.447 3.553 16 O -0.577 6.577 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.005 4.005 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.080 0.920 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 22.129 3.224 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.317 5.317 3 C 0.303 3.697 4 O -0.412 6.412 5 C -0.105 4.105 6 C -0.319 4.319 7 C -0.108 4.108 8 N -0.184 5.184 9 C -0.284 4.284 10 S 0.386 5.614 11 C 0.010 3.990 12 C -0.147 4.147 13 N -0.159 5.159 14 C -0.125 4.125 15 C 0.232 3.768 16 O -0.461 6.461 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.135 4.135 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.191 0.809 33 H 0.215 0.785 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.060 22.900 3.682 24.900 hybrid contribution 0.144 -1.696 -0.914 1.932 sum 9.204 21.204 2.768 23.280 Atomic orbital electron populations 1.21995 0.77777 1.04179 1.02892 1.47404 1.07676 1.04359 1.72299 1.20416 0.87992 0.84891 0.76422 1.90715 1.13754 1.87241 1.49482 1.20085 0.95999 0.88233 1.06135 1.25334 1.06799 1.04249 0.95545 1.21691 0.95542 0.93471 1.00086 1.66306 1.15975 1.16818 1.19268 1.28344 1.04453 1.04196 0.91362 1.83992 1.38515 1.27474 1.11390 1.22048 0.96990 0.82936 0.97026 1.24336 0.94192 0.97635 0.98563 1.68857 1.32081 1.11358 1.03644 1.22514 0.98140 0.89846 1.01998 1.19642 0.88396 0.83139 0.85595 1.90503 1.50977 1.55798 1.48792 1.41885 1.19943 1.05929 1.52616 1.19735 0.96493 0.92156 1.34358 0.87896 1.25262 0.99367 0.95829 0.97566 1.69619 1.36294 1.03887 1.44573 0.85806 0.81263 0.78813 0.78497 1.19233 1.20783 1.20754 1.24285 0.96629 0.96515 0.96089 0.92150 0.91835 0.87938 0.86438 0.87318 0.80909 0.78523 0.86977 0.89526 0.90428 0.89390 0.92140 0.77564 0.91939 0.90181 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.34 59.85 0.56 1.31 16 2 N -0.59 -6.50 3.11 -173.62 -0.54 -7.04 16 3 C 0.52 5.83 7.67 -10.99 -0.08 5.75 16 4 O -0.54 -7.92 15.54 5.56 0.09 -7.83 16 5 C -0.06 -0.49 4.79 -29.03 -0.14 -0.63 16 6 C -0.20 -1.86 5.09 -35.92 -0.18 -2.04 16 7 C 0.04 0.44 11.25 -19.18 -0.22 0.23 16 8 N -0.47 -5.14 10.54 -15.75 -0.17 -5.31 16 9 C 0.01 0.12 12.23 51.58 0.63 0.75 16 10 S 0.13 1.10 23.22 -107.50 -2.50 -1.39 16 11 C 0.12 1.36 4.66 -67.72 -0.32 1.04 16 12 C -0.02 -0.20 7.31 -7.55 -0.06 -0.25 16 13 N -0.44 -6.53 4.41 -246.13 -1.09 -7.61 16 14 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 15 C 0.45 10.19 7.85 -10.98 -0.09 10.11 16 16 O -0.58 -15.08 16.01 5.54 0.09 -14.99 16 17 N -0.57 -14.05 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 22 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.01 -0.07 6.73 -7.56 -0.05 -0.12 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 29 H 0.10 1.35 5.70 -51.93 -0.30 1.05 16 30 H 0.12 0.68 7.40 -51.93 -0.38 0.29 16 31 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.20 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.11 1.35 7.28 -51.93 -0.38 0.97 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 37 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 38 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 39 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 42 H 0.09 1.32 7.27 -51.93 -0.38 0.95 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -34.36 368.12 -8.44 -42.80 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.31 Total: 9.35 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.21 Total: 8.37 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -1.13 Total: -57.62 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.36 -8.44 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323945757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.217 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds