Wall clock time and date at job start Tue Mar 31 2020 20:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34773 * 119.99867 * 2 1 4 4 O 1.21274 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99895 * 0.02562 * 3 2 1 6 6 C 1.50708 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.33634 * 126.03690 * 89.71372 * 6 5 3 8 8 N 1.31788 * 114.49907 * 179.78738 * 7 6 5 9 9 C 1.29019 * 117.12091 * 0.52558 * 8 7 6 10 10 S 1.70973 * 110.16968 * 359.70915 * 9 8 7 11 11 C 1.46496 * 119.99811 * 180.02562 * 2 1 3 12 12 C 1.53513 * 114.17158 * 299.99513 * 11 2 1 13 13 N 1.47484 * 87.93060 * 87.81542 * 12 11 2 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 O 1.21297 * 119.99667 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 13 18 18 C 1.37095 * 119.99878 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00160 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00380 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99401 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46681 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 120.00010 * 22 20 18 25 25 H 1.48501 * 109.47100 * 240.00460 * 22 20 18 26 26 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 27 27 H 1.09000 * 109.46801 * 269.99905 * 1 2 3 28 28 H 1.09002 * 109.46804 * 29.99678 * 1 2 3 29 29 H 1.08996 * 109.46738 * 149.99572 * 1 2 3 30 30 H 1.08998 * 109.47492 * 299.99311 * 5 3 2 31 31 H 1.08999 * 109.47282 * 60.00032 * 5 3 2 32 32 H 1.08005 * 122.75514 * 359.97438 * 7 6 5 33 33 H 1.08008 * 124.91575 * 179.68223 * 9 8 7 34 34 H 1.09001 * 113.25341 * 167.05391 * 11 2 1 35 35 H 1.09005 * 113.47855 * 333.05418 * 12 11 2 36 36 H 1.08997 * 113.47719 * 202.58442 * 12 11 2 37 37 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 38 38 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 39 39 H 0.96998 * 120.00525 * 359.97438 * 17 15 14 40 40 H 0.97004 * 120.00112 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.48071 * 87.76093 * 26 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6178 -0.0002 7 6 2.8788 4.2119 -1.0812 8 7 3.7137 5.1971 -0.8183 9 6 3.9404 5.4602 0.4243 10 16 3.0398 4.4053 1.4240 11 6 2.1975 -1.2687 -0.0006 12 6 1.9054 -2.1637 1.2120 13 7 0.7753 -2.7314 0.4533 14 6 0.6943 -4.1863 0.6395 15 6 -0.5999 -4.6957 0.0589 16 8 -1.3778 -3.9228 -0.4593 17 7 -0.8900 -6.0108 0.1103 18 6 -2.0670 -6.4743 -0.4182 19 1 -2.7619 -5.7854 -0.8754 20 6 -2.3659 -7.8302 -0.3658 21 7 -1.5201 -8.6684 0.1900 22 14 -3.9700 -8.4617 -1.0854 23 1 -4.7411 -7.3246 -1.6490 24 1 -3.6777 -9.4426 -2.1612 25 1 -4.7660 -9.1197 -0.0183 26 6 1.5089 -2.3967 -0.7815 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7584 2.5303 -0.8892 31 1 0.7591 2.5298 0.8908 32 1 2.6283 3.9113 -2.0879 33 1 4.6034 6.2344 0.7813 34 1 3.2580 -1.1533 -0.2249 35 1 1.5981 -1.6080 2.0979 36 1 2.6955 -2.8854 1.4194 37 1 0.7316 -4.4191 1.7036 38 1 1.5327 -4.6647 0.1333 39 1 -0.2657 -6.6296 0.5206 40 1 -1.7289 -9.6150 0.2270 41 1 2.1931 -3.1806 -1.1063 42 1 0.8656 -2.0384 -1.5852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323945757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:31 Heat of formation + Delta-G solvation = 7.491788 kcal Electronic energy + Delta-G solvation = -26066.274152 eV Core-core repulsion = 22174.327673 eV Total energy + Delta-G solvation = -3891.946479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97642 -40.76651 -40.09622 -39.39106 -36.05366 -35.77217 -33.81907 -33.25471 -31.39632 -28.82960 -28.09000 -27.24531 -26.80018 -25.77341 -24.78024 -22.05922 -21.07898 -20.91542 -19.90641 -19.63684 -18.95518 -18.35249 -17.78832 -17.28360 -16.98108 -16.73913 -16.36359 -16.26979 -16.13908 -15.57324 -15.31119 -14.97614 -14.88392 -14.79277 -14.34023 -14.22405 -13.88603 -13.63741 -13.44535 -13.42767 -13.29136 -12.98296 -12.86616 -12.59610 -12.40372 -12.16391 -12.14670 -12.03683 -11.88213 -11.48525 -11.06965 -10.62176 -10.36726 -10.19064 -9.98981 -9.85814 -9.73837 -9.64461 -8.45642 -5.93831 -0.25113 0.45112 0.81068 1.36847 1.42034 1.52355 1.55843 1.77155 2.04343 2.08559 2.29078 2.82338 3.20965 3.37669 3.42958 3.44642 3.62247 3.76324 3.82446 4.09709 4.16203 4.27348 4.32043 4.39346 4.41648 4.45445 4.53977 4.56462 4.62793 4.71550 4.75639 4.82961 4.86181 5.17354 5.20623 5.31245 5.42329 5.53987 5.85897 6.07186 6.39200 6.62281 6.75089 7.09037 7.14992 7.59309 8.15158 8.72032 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.001846 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.668922 B =15160.212840 C =15462.157590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.586 5.586 3 C 0.516 3.484 4 O -0.573 6.573 5 C -0.058 4.058 6 C -0.210 4.210 7 C 0.027 3.973 8 N -0.505 5.505 9 C 0.014 3.986 10 S 0.151 5.849 11 C 0.122 3.878 12 C -0.007 4.007 13 N -0.459 5.459 14 C 0.020 3.980 15 C 0.445 3.555 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.329 4.329 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.006 4.006 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.180 0.820 33 H 0.227 0.773 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.091 0.909 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 22.727 3.979 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.317 5.317 3 C 0.305 3.695 4 O -0.453 6.453 5 C -0.099 4.099 6 C -0.332 4.332 7 C -0.124 4.124 8 N -0.218 5.218 9 C -0.283 4.283 10 S 0.403 5.597 11 C 0.016 3.984 12 C -0.136 4.136 13 N -0.182 5.182 14 C -0.112 4.112 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.216 5.216 18 C -0.459 4.459 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.135 4.135 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.197 0.803 33 H 0.243 0.757 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.298 23.496 4.456 25.658 hybrid contribution 0.114 -1.809 -1.130 2.136 sum 9.412 21.687 3.326 23.874 Atomic orbital electron populations 1.21974 0.77132 1.04232 1.03027 1.47492 1.08008 1.04252 1.71944 1.20940 0.87654 0.85686 0.75227 1.90698 1.15490 1.87778 1.51313 1.20173 0.95696 0.85701 1.08343 1.25534 1.07174 1.04671 0.95826 1.21915 0.95848 0.93777 1.00857 1.66331 1.17116 1.17829 1.20566 1.28890 1.04160 1.04407 0.90843 1.83896 1.38044 1.26955 1.10756 1.21947 0.96858 0.83032 0.96557 1.24356 0.93452 0.97602 0.98239 1.68841 1.34165 1.10002 1.05160 1.22397 0.94929 0.91161 1.02707 1.20741 0.89877 0.82123 0.84020 1.90475 1.52859 1.56558 1.50097 1.41966 1.19541 1.06899 1.53204 1.19677 0.97649 0.92558 1.36013 0.90323 1.26018 1.02379 0.95514 0.97526 1.69678 1.37539 1.04266 1.44849 0.84889 0.77462 0.78018 0.78089 1.19734 1.19763 1.19717 1.24310 0.96421 0.97495 0.95322 0.91920 0.88660 0.91009 0.84017 0.85127 0.80290 0.75681 0.86959 0.89233 0.88353 0.87531 0.89859 0.77131 0.91422 0.89072 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.34 127.77 1.19 2.68 16 2 N -0.59 -12.19 3.11 -821.61 -2.56 -14.75 16 3 C 0.52 10.89 7.67 87.66 0.67 11.56 16 4 O -0.57 -16.45 15.54 -3.01 -0.05 -16.50 16 5 C -0.06 -0.79 4.79 29.11 0.14 -0.65 16 6 C -0.21 -3.65 5.09 24.64 0.13 -3.52 16 7 C 0.03 0.53 11.25 83.65 0.94 1.47 16 8 N -0.50 -10.65 10.54 -203.74 -2.15 -12.80 16 9 C 0.01 0.21 12.23 130.66 1.60 1.81 16 10 S 0.15 2.25 23.22 -56.49 -1.31 0.93 16 11 C 0.12 2.71 4.66 45.44 0.21 2.92 16 12 C -0.01 -0.15 7.31 83.57 0.61 0.47 16 13 N -0.46 -13.19 4.41 -932.63 -4.11 -17.31 16 14 C 0.02 0.63 5.30 85.56 0.45 1.08 16 15 C 0.45 20.43 7.85 87.66 0.69 21.11 16 16 O -0.61 -32.82 16.01 -3.08 -0.05 -32.87 16 17 N -0.58 -29.03 5.29 -306.98 -1.62 -30.65 16 18 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 21 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 22 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 C -0.01 -0.15 6.73 83.57 0.56 0.41 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.16 6.44 -2.39 -0.02 1.14 16 29 H 0.07 1.88 5.70 -2.39 -0.01 1.87 16 30 H 0.14 1.24 7.40 -2.39 -0.02 1.22 16 31 H 0.13 1.23 8.11 -2.39 -0.02 1.21 16 32 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.11 2.56 7.28 -2.39 -0.02 2.54 16 35 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 1.74 7.91 -2.39 -0.02 1.72 16 37 H 0.11 3.03 8.08 -2.39 -0.02 3.01 16 38 H 0.08 2.30 7.30 -2.39 -0.02 2.28 16 39 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 40 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.09 2.11 7.42 -2.39 -0.02 2.09 16 42 H 0.08 2.19 7.27 -2.38 -0.02 2.18 16 Total: -1.00 -75.47 368.12 -0.73 -76.20 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.34 Total: 30.83 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 8.48 Total: 21.40 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -10.16 Total: -124.54 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.10 Total: -49.37 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.31 Total: 0.93 kcal Total: -75.47 -0.73 -76.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323945757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.689 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds