Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35655 * 116.99873 * 2 1 4 4 C 1.38635 * 120.14448 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.07274 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.81760 * 179.97438 * 5 4 3 7 7 C 1.38703 * 120.36234 * 0.02562 * 5 4 3 8 8 C 1.37726 * 120.28481 * 359.73923 * 7 5 4 9 9 C 1.39744 * 119.92124 * 0.50893 * 8 7 5 10 10 C 1.47478 * 120.17860 * 179.76521 * 9 8 7 11 11 O 1.21586 * 119.99875 * 179.72469 * 10 9 8 12 12 N 1.34780 * 119.99718 * 359.73178 * 10 9 8 13 13 C 1.46497 * 119.99653 * 179.97438 * 12 10 9 14 14 C 1.53786 * 113.61643 * 105.85894 * 13 12 10 15 15 C 1.53962 * 87.01719 * 89.22773 * 14 13 12 16 16 C 1.52994 * 113.66220 * 139.93548 * 15 14 13 17 17 N 1.46498 * 109.47402 * 87.44478 * 16 15 14 18 18 C 1.36937 * 120.00198 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00227 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99782 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47159 * 90.00368 * 22 20 18 24 24 H 1.48506 * 109.47067 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.47251 * 329.99938 * 22 20 18 26 26 C 1.53781 * 113.61305 * 203.46742 * 13 12 10 27 27 H 1.08994 * 109.46983 * 299.99683 * 1 2 3 28 28 H 1.09000 * 109.46727 * 60.00443 * 1 2 3 29 29 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.96372 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.85435 * 179.97438 * 7 5 4 32 32 H 1.07999 * 120.03683 * 180.25849 * 8 7 5 33 33 H 0.96995 * 120.00200 * 359.97438 * 12 10 9 34 34 H 1.09002 * 112.84935 * 334.66222 * 13 12 10 35 35 H 1.08993 * 113.61491 * 203.74894 * 14 13 12 36 36 H 1.09000 * 113.61138 * 334.65232 * 14 13 12 37 37 H 1.09002 * 113.61454 * 270.79954 * 15 14 13 38 38 H 1.09005 * 109.46709 * 207.43538 * 16 15 14 39 39 H 1.08998 * 109.47556 * 327.43829 * 16 15 14 40 40 H 0.97001 * 120.00130 * 359.97438 * 17 16 15 41 41 H 0.97001 * 120.00336 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61695 * 25.34675 * 26 13 12 43 43 H 1.08996 * 113.61580 * 156.16953 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6039 -0.0011 6 17 0.9733 5.0580 -0.0024 7 6 3.3064 3.6836 -0.0016 8 6 4.0681 2.5361 0.0038 9 6 3.4446 1.2855 -0.0009 10 6 4.2547 0.0532 -0.0004 11 8 3.7088 -1.0332 0.0006 12 7 5.6002 0.1313 -0.0008 13 6 6.4050 -1.0928 0.0003 14 6 7.0648 -1.3976 -1.3550 15 6 8.2578 -0.5518 -0.8735 16 6 9.6189 -1.1345 -1.2588 17 7 9.9963 -0.6546 -2.5905 18 6 11.1840 -1.0463 -3.1483 19 1 11.8427 -1.7087 -2.6064 20 6 11.5413 -0.5919 -4.4104 21 7 10.7389 0.2158 -5.0707 22 14 13.1612 -1.1269 -5.1716 23 1 12.9539 -2.3735 -5.9514 24 1 13.6622 -0.0574 -6.0719 25 1 14.1553 -1.3749 -4.0967 26 6 7.8235 -0.8970 0.5608 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2140 2.3188 -0.0005 31 1 3.7894 4.6496 -0.0024 32 1 5.1460 2.6028 0.0076 33 1 6.0357 0.9980 -0.0019 34 1 5.8790 -1.9448 0.4312 35 1 7.3053 -2.4512 -1.4964 36 1 6.5366 -0.9652 -2.2048 37 1 8.1674 0.5075 -1.1141 38 1 10.3681 -0.8183 -0.5329 39 1 9.5588 -2.2228 -1.2684 40 1 9.4049 -0.0593 -3.0771 41 1 10.9888 0.5336 -5.9524 42 1 7.9070 -0.0611 1.2554 43 1 8.2714 -1.8132 0.9454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328904273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -18.000200 kcal Electronic energy + Delta-G solvation = -25950.828171 eV Core-core repulsion = 22023.439819 eV Total energy + Delta-G solvation = -3927.388352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00652 -39.78860 -38.19651 -37.94274 -36.70277 -34.51515 -33.25348 -31.51314 -30.70860 -30.66190 -27.75136 -26.78941 -25.47519 -24.48135 -23.28232 -22.67232 -21.44861 -20.97424 -19.17032 -18.76673 -17.58144 -17.03495 -16.88159 -16.21855 -15.82529 -15.68704 -15.27571 -14.87979 -14.79631 -14.47126 -14.18779 -13.95923 -13.69245 -13.61756 -13.29745 -12.94354 -12.75862 -12.41102 -12.31314 -12.21217 -12.09154 -11.81314 -11.59270 -11.45127 -11.25480 -11.01334 -10.81556 -10.45016 -10.32072 -10.07409 -9.91312 -9.79832 -9.58493 -9.43747 -8.98823 -8.82474 -8.67749 -6.87784 -5.73768 -3.01797 0.26808 0.83794 1.55295 2.55893 2.82045 3.02161 3.43450 3.45282 3.50232 3.51902 4.17413 4.39706 4.51802 4.55539 4.60152 4.71197 4.75717 4.78317 4.85907 4.97066 5.02120 5.15080 5.17093 5.18606 5.44996 5.60588 5.62850 5.68722 5.77598 5.90089 5.96911 6.01207 6.04964 6.13759 6.28297 6.34765 6.45820 6.66922 6.81280 6.88390 6.96727 7.46960 7.72482 8.19874 8.45557 9.56484 10.15977 10.50329 11.49254 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002137 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.251909 B =13099.036894 C =14127.737708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.198 3.802 4 C -0.215 4.215 5 C 0.029 3.971 6 Cl -0.060 7.060 7 C -0.157 4.157 8 C -0.033 4.033 9 C -0.166 4.166 10 C 0.562 3.438 11 O -0.517 6.517 12 N -0.707 5.707 13 C 0.118 3.882 14 C -0.139 4.139 15 C -0.113 4.113 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.398 0.602 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.948 7.164 15.064 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.149 3.851 4 C -0.235 4.235 5 C 0.002 3.998 6 Cl -0.031 7.031 7 C -0.175 4.175 8 C -0.052 4.052 9 C -0.170 4.170 10 C 0.349 3.651 11 O -0.393 6.393 12 N -0.359 5.359 13 C 0.013 3.987 14 C -0.177 4.177 15 C -0.132 4.132 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.234 0.766 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.191 6.197 15.048 28.331 hybrid contribution 0.595 0.785 -0.783 1.258 sum -22.596 6.983 14.265 27.619 Atomic orbital electron populations 1.23240 0.78367 1.04744 1.01374 1.86428 1.21051 1.24618 1.86255 1.18835 0.90776 0.84607 0.90853 1.21067 1.01049 0.90308 1.11054 1.20858 0.92017 0.87385 0.99561 1.98397 1.72308 1.35932 1.96478 1.20909 0.91283 0.99890 1.05463 1.21180 1.00351 0.90050 0.93589 1.19507 0.90882 0.94426 1.12203 1.17823 0.81985 0.88415 0.76906 1.90828 1.71492 1.28515 1.48457 1.45576 1.05476 1.09553 1.75275 1.21930 0.90967 0.87439 0.98356 1.23446 0.96544 1.01183 0.96561 1.22791 0.95949 0.99909 0.94544 1.20639 0.91671 0.95898 0.88337 1.42350 1.22343 1.57799 1.15094 1.19247 0.95872 1.23134 0.98664 0.91247 1.24738 0.98699 1.00289 0.97419 1.69657 1.37216 1.37562 1.13881 0.86196 0.83415 0.77610 0.79019 1.21754 1.21804 1.20795 1.23309 0.94421 1.02645 0.97244 0.92406 0.92323 0.87582 0.83700 0.83898 0.83724 0.76605 0.88260 0.89109 0.91282 0.89473 0.96415 0.96205 0.78339 0.93572 0.91266 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.27 -3.20 8.57 -40.56 -0.35 -3.55 16 3 C 0.20 2.17 6.70 -38.71 -0.26 1.91 16 4 C -0.22 -1.85 8.80 -39.45 -0.35 -2.20 16 5 C 0.03 0.24 6.32 -39.42 -0.25 -0.01 16 6 Cl -0.06 -0.45 28.94 -51.86 -1.50 -1.96 16 7 C -0.16 -1.22 9.80 -39.60 -0.39 -1.61 16 8 C -0.03 -0.28 9.53 -39.21 -0.37 -0.65 16 9 C -0.17 -1.86 5.89 -104.84 -0.62 -2.48 16 10 C 0.56 7.62 7.76 -12.49 -0.10 7.52 16 11 O -0.52 -8.85 14.78 -16.60 -0.25 -9.10 16 12 N -0.71 -8.27 5.22 -54.07 -0.28 -8.55 16 13 C 0.12 1.51 4.29 -67.12 -0.29 1.22 16 14 C -0.14 -2.09 7.45 -25.82 -0.19 -2.28 16 15 C -0.11 -1.73 3.64 -89.71 -0.33 -2.06 16 16 C 0.16 3.21 6.10 -4.05 -0.02 3.19 16 17 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.15 0.94 6.30 -52.48 -0.33 0.61 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.15 0.88 6.40 -52.49 -0.34 0.54 16 33 H 0.40 3.69 6.73 -40.82 -0.27 3.41 16 34 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 35 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -34.68 374.70 -9.73 -44.42 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.76 Total: 7.86 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.61 Total: -5.61 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.11 Total: -55.29 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.59 Total: -12.65 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.68 -9.73 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328904273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.416 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds