Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35655 * 116.99873 * 2 1 4 4 C 1.38635 * 120.14448 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.07274 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.81760 * 179.97438 * 5 4 3 7 7 C 1.38703 * 120.36234 * 0.02562 * 5 4 3 8 8 C 1.37726 * 120.28481 * 359.73923 * 7 5 4 9 9 C 1.39744 * 119.92124 * 0.50893 * 8 7 5 10 10 C 1.47478 * 120.17860 * 179.76521 * 9 8 7 11 11 O 1.21586 * 119.99875 * 179.72469 * 10 9 8 12 12 N 1.34780 * 119.99718 * 359.73178 * 10 9 8 13 13 C 1.46497 * 119.99653 * 179.97438 * 12 10 9 14 14 C 1.53786 * 113.61643 * 105.85894 * 13 12 10 15 15 C 1.53962 * 87.01719 * 89.22773 * 14 13 12 16 16 C 1.52994 * 113.66220 * 139.93548 * 15 14 13 17 17 N 1.46498 * 109.47402 * 87.44478 * 16 15 14 18 18 C 1.36937 * 120.00198 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00227 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99782 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47159 * 90.00368 * 22 20 18 24 24 H 1.48506 * 109.47067 * 210.00107 * 22 20 18 25 25 H 1.48500 * 109.47251 * 329.99938 * 22 20 18 26 26 C 1.53781 * 113.61305 * 203.46742 * 13 12 10 27 27 H 1.08994 * 109.46983 * 299.99683 * 1 2 3 28 28 H 1.09000 * 109.46727 * 60.00443 * 1 2 3 29 29 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.96372 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.85435 * 179.97438 * 7 5 4 32 32 H 1.07999 * 120.03683 * 180.25849 * 8 7 5 33 33 H 0.96995 * 120.00200 * 359.97438 * 12 10 9 34 34 H 1.09002 * 112.84935 * 334.66222 * 13 12 10 35 35 H 1.08993 * 113.61491 * 203.74894 * 14 13 12 36 36 H 1.09000 * 113.61138 * 334.65232 * 14 13 12 37 37 H 1.09002 * 113.61454 * 270.79954 * 15 14 13 38 38 H 1.09005 * 109.46709 * 207.43538 * 16 15 14 39 39 H 1.08998 * 109.47556 * 327.43829 * 16 15 14 40 40 H 0.97001 * 120.00130 * 359.97438 * 17 16 15 41 41 H 0.97001 * 120.00336 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61695 * 25.34675 * 26 13 12 43 43 H 1.08996 * 113.61580 * 156.16953 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6039 -0.0011 6 17 0.9733 5.0580 -0.0024 7 6 3.3064 3.6836 -0.0016 8 6 4.0681 2.5361 0.0038 9 6 3.4446 1.2855 -0.0009 10 6 4.2547 0.0532 -0.0004 11 8 3.7088 -1.0332 0.0006 12 7 5.6002 0.1313 -0.0008 13 6 6.4050 -1.0928 0.0003 14 6 7.0648 -1.3976 -1.3550 15 6 8.2578 -0.5518 -0.8735 16 6 9.6189 -1.1345 -1.2588 17 7 9.9963 -0.6546 -2.5905 18 6 11.1840 -1.0463 -3.1483 19 1 11.8427 -1.7087 -2.6064 20 6 11.5413 -0.5919 -4.4104 21 7 10.7389 0.2158 -5.0707 22 14 13.1612 -1.1269 -5.1716 23 1 12.9539 -2.3735 -5.9514 24 1 13.6622 -0.0574 -6.0719 25 1 14.1553 -1.3749 -4.0967 26 6 7.8235 -0.8970 0.5608 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2140 2.3188 -0.0005 31 1 3.7894 4.6496 -0.0024 32 1 5.1460 2.6028 0.0076 33 1 6.0357 0.9980 -0.0019 34 1 5.8790 -1.9448 0.4312 35 1 7.3053 -2.4512 -1.4964 36 1 6.5366 -0.9652 -2.2048 37 1 8.1674 0.5075 -1.1141 38 1 10.3681 -0.8183 -0.5329 39 1 9.5588 -2.2228 -1.2684 40 1 9.4049 -0.0593 -3.0771 41 1 10.9888 0.5336 -5.9524 42 1 7.9070 -0.0611 1.2554 43 1 8.2714 -1.8132 0.9454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328904273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -39.704937 kcal Electronic energy + Delta-G solvation = -25951.769359 eV Core-core repulsion = 22023.439819 eV Total energy + Delta-G solvation = -3928.329540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82556 -40.77815 -39.21812 -38.70798 -37.36411 -36.31642 -34.50869 -32.93764 -31.95879 -31.36991 -28.62219 -28.13864 -26.60777 -25.63977 -24.76411 -23.45194 -22.84498 -21.91721 -20.32985 -19.58522 -19.04509 -18.38537 -17.66160 -16.94356 -16.87675 -16.60778 -16.37798 -16.09797 -15.94582 -15.60134 -15.53162 -15.09007 -14.86872 -14.63133 -14.48836 -14.27736 -13.67896 -13.58436 -13.36701 -13.10624 -12.97178 -12.92682 -12.81966 -12.65673 -12.41237 -12.16548 -12.05701 -11.91292 -11.87434 -11.71300 -11.33720 -11.12636 -10.95842 -10.83581 -10.16659 -9.97616 -9.39948 -8.95956 -7.93676 -5.21677 -0.46188 0.18079 0.91645 1.47670 1.49537 1.57877 1.70096 2.07189 2.21726 2.57220 2.61951 3.39300 3.55137 3.60713 3.62293 3.66633 3.85711 3.94918 3.96793 3.98803 4.23105 4.29963 4.33294 4.35452 4.45148 4.58637 4.68351 4.74894 4.83084 4.87718 4.93054 4.95745 5.01046 5.01574 5.04746 5.18155 5.30040 5.38008 5.41183 5.50977 5.70316 6.22529 6.29312 6.54732 7.22597 7.35197 8.13681 8.35830 9.29987 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002137 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.251909 B =13099.036894 C =14127.737708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.183 3.817 4 C -0.213 4.213 5 C 0.027 3.973 6 Cl -0.051 7.051 7 C -0.155 4.155 8 C -0.026 4.026 9 C -0.192 4.192 10 C 0.559 3.441 11 O -0.562 6.562 12 N -0.697 5.697 13 C 0.127 3.873 14 C -0.144 4.144 15 C -0.110 4.110 16 C 0.159 3.841 17 N -0.745 5.745 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.268 1.268 26 C -0.114 4.114 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.412 0.588 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.095 0.905 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.831 8.267 16.408 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.134 3.866 4 C -0.232 4.232 5 C 0.000 4.000 6 Cl -0.022 7.022 7 C -0.174 4.174 8 C -0.045 4.045 9 C -0.196 4.196 10 C 0.348 3.652 11 O -0.441 6.441 12 N -0.349 5.349 13 C 0.022 3.978 14 C -0.183 4.183 15 C -0.128 4.128 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.193 1.193 26 C -0.153 4.153 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.181 0.819 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.250 0.750 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.205 0.795 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.062 7.309 16.440 29.250 hybrid contribution 0.477 0.458 -1.171 1.345 sum -22.584 7.768 15.269 28.347 Atomic orbital electron populations 1.23497 0.76366 1.05821 1.02794 1.86381 1.23375 1.25576 1.86484 1.19062 0.91011 0.85085 0.91421 1.21206 1.01888 0.89690 1.10444 1.21036 0.92520 0.87619 0.98866 1.98404 1.72143 1.35264 1.96364 1.21197 0.91145 1.00610 1.04427 1.21409 1.01528 0.89089 0.92425 1.19528 0.91125 0.94348 1.14600 1.18239 0.82386 0.88716 0.75876 1.90794 1.72329 1.30272 1.50708 1.45487 1.05059 1.09873 1.74519 1.21759 0.91541 0.87867 0.96659 1.23458 0.96924 1.00671 0.97240 1.22716 0.93263 0.99588 0.97278 1.20835 0.94149 0.95864 0.85849 1.42587 1.21514 1.57696 1.16966 1.19666 0.96740 1.22376 0.98846 0.90713 1.25570 1.02242 1.01008 0.98201 1.69813 1.39084 1.39168 1.14050 0.85149 0.79690 0.76823 0.78164 1.21604 1.22124 1.19320 1.23218 0.92585 1.04109 0.95363 0.90705 0.91079 0.86831 0.81917 0.81651 0.81489 0.75032 0.88909 0.89766 0.93240 0.89382 0.95861 0.96302 0.79541 0.94061 0.88677 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.34 8.57 -68.78 -0.59 -7.93 16 3 C 0.18 3.96 6.70 22.84 0.15 4.12 16 4 C -0.21 -3.41 8.80 22.36 0.20 -3.21 16 5 C 0.03 0.40 6.32 22.37 0.14 0.54 16 6 Cl -0.05 -0.66 28.94 -2.72 -0.08 -0.74 16 7 C -0.16 -2.07 9.80 22.26 0.22 -1.86 16 8 C -0.03 -0.39 9.53 22.51 0.21 -0.18 16 9 C -0.19 -4.24 5.89 -20.01 -0.12 -4.35 16 10 C 0.56 15.25 7.76 86.68 0.67 15.92 16 11 O -0.56 -19.89 14.78 16.94 0.25 -19.64 16 12 N -0.70 -15.70 5.22 -443.26 -2.31 -18.01 16 13 C 0.13 3.15 4.29 45.52 0.20 3.35 16 14 C -0.14 -4.36 7.45 31.18 0.23 -4.12 16 15 C -0.11 -3.24 3.64 -10.21 -0.04 -3.28 16 16 C 0.16 6.18 6.10 86.38 0.53 6.71 16 17 N -0.75 -38.03 5.60 -343.46 -1.92 -39.95 16 18 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 21 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 22 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.11 -2.45 7.38 31.12 0.23 -2.22 16 27 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 28 H 0.07 0.71 7.66 -2.39 -0.02 0.70 16 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 1.61 6.40 -2.91 -0.02 1.59 16 33 H 0.41 6.88 6.73 -92.71 -0.62 6.25 16 34 H 0.09 2.49 7.50 -2.39 -0.02 2.48 16 35 H 0.08 2.63 7.90 -2.39 -0.02 2.61 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 40 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 41 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -75.83 374.70 2.42 -73.41 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.28 Total: 28.36 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.04 Total: -4.37 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.95 Total: -117.60 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.34 Total: -27.57 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -75.83 2.42 -73.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328904273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.701 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds