Wall clock time and date at job start Tue Mar 31 2020 20:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00133 * 2 1 4 4 O 1.21609 * 119.99766 * 183.26973 * 3 2 1 5 5 C 1.47403 * 120.00160 * 2.99159 * 3 2 1 6 6 N 1.31619 * 125.85996 * 354.03892 * 5 3 2 7 7 C 1.33101 * 109.09436 * 180.02562 * 6 5 3 8 8 C 1.35562 * 108.35103 * 359.97438 * 7 6 5 9 9 N 1.35404 * 107.16027 * 359.73615 * 8 7 6 10 10 H 0.97000 * 126.44735 * 180.28332 * 9 8 7 11 11 C 1.46510 * 119.99815 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64112 * 180.69944 * 11 2 1 13 13 C 1.55154 * 110.71649 * 57.56216 * 11 2 1 14 14 C 1.54916 * 101.57856 * 206.13329 * 13 11 2 15 15 N 1.47422 * 104.83262 * 37.00673 * 14 13 11 16 16 C 1.34774 * 125.64730 * 155.90478 * 15 14 13 17 17 O 1.21275 * 120.00070 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.00033 * 359.97438 * 16 15 14 19 19 S 1.80998 * 109.47097 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99915 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00197 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99936 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00017 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47036 * 120.00510 * 24 22 20 27 27 H 1.48497 * 109.46958 * 240.00390 * 24 22 20 28 28 C 1.47321 * 108.73700 * 335.72115 * 15 14 13 29 29 H 1.08995 * 109.47017 * 84.18665 * 1 2 3 30 30 H 1.08998 * 109.46998 * 204.18271 * 1 2 3 31 31 H 1.08998 * 109.47101 * 324.17925 * 1 2 3 32 32 H 1.07998 * 125.82692 * 179.97438 * 7 6 5 33 33 H 1.08003 * 126.42452 * 180.02562 * 8 7 6 34 34 H 1.08996 * 111.00839 * 324.20548 * 13 11 2 35 35 H 1.08995 * 111.00722 * 88.06249 * 13 11 2 36 36 H 1.08996 * 110.36442 * 155.85335 * 14 13 11 37 37 H 1.09004 * 110.36355 * 278.05814 * 14 13 11 38 38 H 1.09000 * 109.47433 * 300.00284 * 18 16 15 39 39 H 1.09004 * 109.46903 * 60.00001 * 18 16 15 40 40 H 0.97000 * 120.00018 * 179.97438 * 23 22 20 41 41 H 1.09005 * 110.05638 * 241.87029 * 28 15 14 42 42 H 1.08994 * 109.84911 * 120.61268 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3535 1.1679 -0.0601 5 6 1.4035 2.4429 0.0666 6 7 0.0955 2.5823 0.0185 7 6 -0.2080 3.8753 0.1054 8 6 0.9461 4.5784 0.2127 9 7 1.9621 3.6835 0.1952 10 1 2.9088 3.8851 0.2593 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0916 0.0129 13 6 1.7978 -2.1339 -1.2238 14 6 2.0901 -3.5634 -0.7033 15 7 1.7030 -3.5337 0.7188 16 6 1.3466 -4.6026 1.4583 17 8 1.0465 -4.4602 2.6247 18 6 1.3210 -5.9748 0.8358 19 16 0.8056 -7.1897 2.0746 20 6 0.8627 -8.6593 1.1040 21 1 1.1563 -8.6098 0.0659 22 6 0.5312 -9.8807 1.6740 23 7 0.1739 -9.9412 2.9394 24 14 0.5924 -11.4387 0.6453 25 1 1.0217 -11.1033 -0.7362 26 1 1.5603 -12.3911 1.2464 27 1 -0.7557 -12.0605 0.6079 28 6 1.7743 -2.1430 1.1998 29 1 -0.3633 0.1041 -1.0223 30 1 -0.3633 -0.9375 0.4210 31 1 -0.3633 0.8333 0.6014 32 1 -1.2038 4.2931 0.0926 33 1 1.0378 5.6509 0.3008 34 1 0.7405 -2.0126 -1.4595 35 1 2.4187 -1.8983 -2.0881 36 1 1.4898 -4.2944 -1.2449 37 1 3.1505 -3.7946 -0.8048 38 1 0.6166 -5.9834 0.0040 39 1 2.3168 -6.2270 0.4713 40 1 -0.0581 -10.7947 3.3376 41 1 2.5127 -2.0607 1.9974 42 1 0.7966 -1.8264 1.5627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350642537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:59 Heat of formation + Delta-G solvation = 15.875682 kcal Electronic energy + Delta-G solvation = -26092.393067 eV Core-core repulsion = 22200.810141 eV Total energy + Delta-G solvation = -3891.582926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.74805 -40.48939 -39.25142 -37.38674 -35.40588 -33.17171 -32.42648 -31.54797 -30.12114 -29.71007 -28.12876 -27.14058 -25.49885 -24.37307 -23.17336 -22.04517 -21.40208 -20.11337 -19.39124 -18.55632 -17.72865 -17.45436 -16.70471 -16.34586 -16.18290 -15.69499 -15.05642 -14.81638 -14.79857 -14.56848 -14.36409 -14.06633 -13.99122 -13.82715 -13.65374 -13.18295 -12.82640 -12.64523 -12.54408 -12.43870 -12.09556 -11.87791 -11.74112 -11.08601 -11.05826 -11.01221 -10.78999 -10.75419 -10.70117 -10.33992 -9.80567 -9.44870 -9.21141 -9.07116 -8.96292 -8.54875 -8.22635 -6.50025 -6.21447 -3.92070 0.87184 1.97755 2.12092 2.77277 2.91817 3.02817 3.06414 3.21976 3.27125 3.31821 3.61079 3.73712 4.19643 4.25253 4.27505 4.41225 4.69430 4.75654 4.86516 4.91341 5.02338 5.04277 5.12365 5.13845 5.33162 5.43605 5.46839 5.52914 5.56763 5.63051 5.73502 5.76455 5.86222 5.91990 6.04091 6.13473 6.21752 6.36385 6.60374 6.83831 7.23752 7.59917 7.62483 7.63357 8.35763 8.53647 9.23958 10.86044 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.001941 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.919841 B =14419.916796 C =14620.115535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.579 5.579 3 C 0.606 3.394 4 O -0.543 6.543 5 C 0.147 3.853 6 N -0.436 5.436 7 C -0.031 4.031 8 C -0.022 4.022 9 N -0.524 5.524 10 H 0.431 0.569 11 C 0.130 3.870 12 H 0.119 0.881 13 C -0.141 4.141 14 C 0.103 3.897 15 N -0.625 5.625 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.100 3.900 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 29.625 -10.471 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.310 5.310 3 C 0.392 3.608 4 O -0.419 6.419 5 C -0.113 4.113 6 N -0.159 5.159 7 C -0.183 4.183 8 C -0.161 4.161 9 N -0.126 5.126 10 H 0.270 0.730 11 C 0.026 3.974 12 H 0.137 0.863 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.387 6.387 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.024 4.024 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.197 0.803 33 H 0.204 0.796 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.876 28.931 -8.631 30.249 hybrid contribution 1.245 -0.238 -1.942 2.319 sum 3.121 28.692 -10.573 30.737 Atomic orbital electron populations 1.22396 0.77242 1.04652 1.03563 1.47386 1.08318 1.04223 1.71067 1.16502 0.85672 0.81624 0.76961 1.90847 1.12726 1.86874 1.51496 1.22556 0.89308 0.87119 1.12358 1.70414 1.09985 1.19493 1.16021 1.22647 0.99030 0.89027 1.07617 1.23041 0.87858 0.96935 1.08258 1.42946 1.10961 1.06361 1.52335 0.72964 1.22209 0.98349 0.81840 0.95026 0.86270 1.23171 1.03348 0.93923 0.97553 1.22285 1.00953 0.97155 0.81720 1.48499 1.69850 1.06437 1.11602 1.20057 0.75651 0.84626 0.85878 1.90716 1.46752 1.85134 1.16119 1.23508 1.05205 0.95463 1.05503 1.85420 1.87818 0.97340 1.12839 1.22900 1.53278 0.92975 0.99103 0.90846 1.24999 0.94544 0.98796 0.95281 1.70029 1.42589 1.26216 1.11422 0.86111 0.77936 0.81596 0.79817 1.19603 1.20575 1.20566 1.22177 1.02609 0.81532 0.96098 0.91955 0.90947 0.87214 0.80271 0.79558 0.89671 0.89222 0.89684 0.90867 0.89211 0.89191 0.92231 0.90769 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 8.23 59.85 0.49 1.05 16 2 N -0.58 -5.75 2.88 -173.11 -0.50 -6.25 16 3 C 0.61 6.61 7.67 -12.53 -0.10 6.51 16 4 O -0.54 -7.04 16.47 5.27 0.09 -6.96 16 5 C 0.15 1.37 7.67 -154.52 -1.18 0.19 16 6 N -0.44 -3.89 7.68 -11.26 -0.09 -3.97 16 7 C -0.03 -0.19 11.85 -17.96 -0.21 -0.41 16 8 C -0.02 -0.10 12.00 -16.93 -0.20 -0.30 16 9 N -0.52 -3.34 6.15 -10.78 -0.07 -3.41 16 10 H 0.43 1.93 8.96 -40.82 -0.37 1.57 16 11 C 0.13 1.31 3.34 -66.09 -0.22 1.09 16 12 H 0.12 1.27 7.00 -51.93 -0.36 0.91 16 13 C -0.14 -1.20 6.65 -24.58 -0.16 -1.37 16 14 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 15 N -0.63 -9.01 3.33 -170.28 -0.57 -9.58 16 16 C 0.55 10.63 7.87 -10.99 -0.09 10.55 16 17 O -0.51 -12.02 16.19 5.56 0.09 -11.93 16 18 C -0.15 -2.99 5.16 36.01 0.19 -2.80 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.10 1.26 6.41 -2.90 -0.02 1.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 31 H 0.11 1.01 5.34 -51.93 -0.28 0.73 16 32 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.19 0.12 8.06 -52.48 -0.42 -0.30 16 34 H 0.08 0.71 7.24 -51.93 -0.38 0.33 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.68 7.85 -51.92 -0.41 1.28 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.99 6.20 -51.93 -0.32 0.66 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -37.41 365.29 -8.70 -46.11 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.33 Total: -0.43 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.33 Total: 3.86 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.49 Total: -48.67 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.41 -8.70 -46.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350642537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.983 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds