Wall clock time and date at job start Tue Mar 31 2020 20:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99866 * 2 1 4 4 O 1.21571 * 119.99850 * 183.42583 * 3 2 1 5 5 C 1.47712 * 119.99988 * 3.42064 * 3 2 1 6 6 C 1.41501 * 126.51493 * 173.48351 * 5 3 2 7 7 C 1.35368 * 105.50188 * 180.02562 * 6 5 3 8 8 N 1.35045 * 107.22505 * 359.97438 * 7 6 5 9 9 H 0.97001 * 124.87842 * 180.02562 * 8 7 6 10 10 N 1.28459 * 110.23258 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00234 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64326 * 180.70401 * 11 2 1 13 13 C 1.55158 * 110.71652 * 57.56533 * 11 2 1 14 14 C 1.54918 * 101.57965 * 206.13336 * 13 11 2 15 15 N 1.47426 * 104.83151 * 37.01060 * 14 13 11 16 16 C 1.34769 * 125.64957 * 155.90434 * 15 14 13 17 17 O 1.21286 * 120.00353 * 179.97438 * 16 15 14 18 18 C 1.50701 * 119.99933 * 359.97438 * 16 15 14 19 19 S 1.81001 * 109.47063 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00108 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99755 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00369 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99627 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47066 * 89.99907 * 24 22 20 26 26 H 1.48501 * 109.47137 * 209.99719 * 24 22 20 27 27 H 1.48503 * 109.46917 * 329.99765 * 24 22 20 28 28 C 1.47325 * 108.73663 * 335.71342 * 15 14 13 29 29 H 1.09009 * 109.46764 * 84.10366 * 1 2 3 30 30 H 1.09001 * 109.46979 * 204.09880 * 1 2 3 31 31 H 1.08995 * 109.47373 * 324.10603 * 1 2 3 32 32 H 1.07994 * 127.25168 * 0.05549 * 6 5 3 33 33 H 1.07994 * 126.39080 * 180.02562 * 7 6 5 34 34 H 1.08996 * 111.00432 * 324.20482 * 13 11 2 35 35 H 1.09002 * 111.00549 * 88.06412 * 13 11 2 36 36 H 1.08999 * 110.36300 * 155.84794 * 14 13 11 37 37 H 1.08996 * 110.36594 * 278.06537 * 14 13 11 38 38 H 1.08992 * 109.47316 * 299.99769 * 18 16 15 39 39 H 1.09004 * 109.47034 * 60.00408 * 18 16 15 40 40 H 0.97003 * 119.99737 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.06512 * 241.87460 * 28 15 14 42 42 H 1.08993 * 109.84844 * 120.60816 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1682 -0.0629 5 6 1.4022 2.4453 0.0763 6 6 1.9667 3.7354 0.2150 7 6 0.9163 4.5890 0.2402 8 7 -0.2054 3.8464 0.1227 9 1 -1.1077 4.2024 0.1110 10 7 0.0942 2.6008 0.0284 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0915 0.0130 13 6 1.7979 -2.1338 -1.2239 14 6 2.0904 -3.5633 -0.7034 15 7 1.7030 -3.5337 0.7187 16 6 1.3466 -4.6026 1.4581 17 8 1.0463 -4.4602 2.6246 18 6 1.3212 -5.9748 0.8356 19 16 0.8072 -7.1900 2.0747 20 6 0.8627 -8.6593 1.1037 21 1 1.1550 -8.6095 0.0652 22 6 0.5308 -9.8806 1.6735 23 7 0.1741 -9.9412 2.9390 24 14 0.5904 -11.4383 0.6442 25 1 1.9434 -12.0430 0.7392 26 1 -0.4195 -12.4035 1.1481 27 1 0.2946 -11.1069 -0.7728 28 6 1.7743 -2.1430 1.1998 29 1 -0.3633 0.1056 -1.0223 30 1 -0.3633 -0.9381 0.4196 31 1 -0.3634 0.8325 0.6025 32 1 3.0147 3.9864 0.2853 33 1 0.9662 5.6636 0.3357 34 1 0.7407 -2.0125 -1.4596 35 1 2.4189 -1.8981 -2.0882 36 1 1.4900 -4.2943 -1.2450 37 1 3.1507 -3.7944 -0.8048 38 1 0.6169 -5.9834 0.0038 39 1 2.3171 -6.2270 0.4712 40 1 -0.0575 -10.7948 3.3373 41 1 2.5126 -2.0606 1.9974 42 1 0.7966 -1.8264 1.5626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350642571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:48 Heat of formation + Delta-G solvation = 31.222593 kcal Electronic energy + Delta-G solvation = -26065.666485 eV Core-core repulsion = 22174.749051 eV Total energy + Delta-G solvation = -3890.917434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.10153 -40.44854 -39.20092 -37.30438 -35.22852 -32.46806 -32.41845 -31.46273 -30.79972 -29.69042 -28.20053 -27.12248 -25.49841 -24.61574 -23.19527 -22.22907 -21.01860 -19.61736 -19.36006 -18.74639 -17.72882 -17.52944 -16.81681 -16.35716 -16.29327 -15.62397 -15.05316 -14.97754 -14.79349 -14.27114 -14.16625 -14.04589 -13.85718 -13.68370 -13.47025 -13.15636 -12.80722 -12.64176 -12.52055 -12.39975 -12.05597 -11.83211 -11.71818 -11.14511 -11.05466 -11.01259 -10.94199 -10.75046 -10.39616 -9.89145 -9.80908 -9.67337 -9.42573 -9.05729 -8.93961 -8.51977 -8.22272 -6.49329 -6.20686 -3.91337 1.14833 1.68975 2.27726 2.61267 2.99959 3.04657 3.07722 3.23219 3.27498 3.31437 3.63008 3.93715 4.20775 4.30279 4.33357 4.39374 4.63536 4.79916 4.95560 5.03295 5.06532 5.13925 5.14575 5.18093 5.27604 5.35673 5.47198 5.55659 5.59528 5.65115 5.70123 5.78942 5.85737 5.92303 5.94660 6.14525 6.20521 6.39603 6.50256 7.00368 7.35382 7.60367 7.65156 7.84021 8.36174 8.55690 9.24540 10.86742 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.001939 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.022066 B =14437.828585 C =14643.227195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.593 5.593 3 C 0.604 3.396 4 O -0.531 6.531 5 C -0.010 4.010 6 C -0.179 4.179 7 C -0.013 4.013 8 N -0.386 5.386 9 H 0.447 0.553 10 N -0.254 5.254 11 C 0.130 3.870 12 H 0.120 0.880 13 C -0.141 4.141 14 C 0.102 3.898 15 N -0.625 5.625 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.100 3.900 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 30.185 -10.543 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C 0.391 3.609 4 O -0.405 6.405 5 C -0.171 4.171 6 C -0.207 4.207 7 C -0.157 4.157 8 N -0.100 5.100 9 H 0.291 0.709 10 N -0.091 5.091 11 C 0.026 3.974 12 H 0.137 0.863 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.388 6.388 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.024 4.024 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.903 29.588 -8.726 30.861 hybrid contribution 0.505 -0.427 -1.972 2.080 sum -0.398 29.161 -10.698 31.064 Atomic orbital electron populations 1.22178 0.78242 1.04104 1.02831 1.47571 1.07728 1.04840 1.72366 1.16962 0.86095 0.81644 0.76213 1.90803 1.12794 1.86585 1.50360 1.21909 0.89734 0.95320 1.10100 1.21820 1.00718 0.90418 1.07697 1.22984 0.85969 0.99467 1.07322 1.43541 1.10062 1.03899 1.52449 0.70895 1.73747 1.16358 0.99903 1.19130 1.22155 0.98497 0.82149 0.94647 0.86257 1.23167 1.03136 0.93972 0.97741 1.22286 1.00938 0.97201 0.81698 1.48504 1.69759 1.06492 1.11614 1.20051 0.75679 0.84637 0.85879 1.90716 1.46832 1.85159 1.16120 1.23506 1.05201 0.95495 1.05471 1.85412 1.87887 0.97312 1.12799 1.22859 1.53374 0.93021 0.99045 0.90908 1.24993 0.94533 0.98781 0.95295 1.70021 1.42541 1.26276 1.11430 0.86165 0.78071 0.81377 0.79862 1.20261 1.20764 1.19693 1.22189 1.02453 0.81482 0.96301 0.92266 0.90737 0.88538 0.81869 0.79733 0.89908 0.89248 0.89793 0.90856 0.89251 0.89184 0.92190 0.90781 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.26 59.85 0.49 1.09 16 2 N -0.59 -6.15 2.88 -172.99 -0.50 -6.65 16 3 C 0.60 7.13 7.68 -12.39 -0.10 7.03 16 4 O -0.53 -7.68 16.31 5.30 0.09 -7.59 16 5 C -0.01 -0.10 6.82 -82.76 -0.56 -0.66 16 6 C -0.18 -1.36 10.81 -39.36 -0.43 -1.79 16 7 C -0.01 -0.06 12.02 -17.16 -0.21 -0.26 16 8 N -0.39 -1.72 6.83 30.47 0.21 -1.51 16 9 H 0.45 0.32 8.96 -190.44 -1.71 -1.39 16 10 N -0.25 -2.00 8.76 33.42 0.29 -1.71 16 11 C 0.13 1.38 3.34 -66.09 -0.22 1.16 16 12 H 0.12 1.36 7.00 -51.93 -0.36 1.00 16 13 C -0.14 -1.26 6.65 -24.58 -0.16 -1.42 16 14 C 0.10 1.10 6.69 -2.52 -0.02 1.09 16 15 N -0.63 -9.21 3.33 -170.28 -0.57 -9.78 16 16 C 0.55 10.76 7.87 -10.99 -0.09 10.67 16 17 O -0.51 -12.15 16.19 5.55 0.09 -12.06 16 18 C -0.15 -3.01 5.16 36.01 0.19 -2.83 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.10 1.30 6.41 -2.90 -0.02 1.28 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 31 H 0.10 0.82 5.36 -51.93 -0.28 0.55 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.19 0.06 8.06 -52.49 -0.42 -0.36 16 34 H 0.08 0.71 7.24 -51.93 -0.38 0.33 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.69 7.85 -51.92 -0.41 1.29 16 39 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.98 6.20 -51.93 -0.32 0.66 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -38.36 365.07 -8.99 -47.35 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.68 Total: -2.93 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.92 Total: 2.35 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.17 Total: -45.18 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.18 Total: -19.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.36 -8.99 -47.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350642571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.570 kcal (2) G-P(sol) polarization free energy of solvation -38.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds