Wall clock time and date at job start Tue Mar 31 2020 20:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34492 * 126.47094 * 2 1 4 4 N 1.30858 * 109.16545 * 180.02562 * 3 2 1 5 5 C 1.33316 * 109.68234 * 359.72669 * 4 3 2 6 6 C 1.36658 * 107.78834 * 0.44385 * 5 4 3 7 7 C 1.46765 * 126.84853 * 179.83839 * 6 5 4 8 8 O 1.21681 * 120.00291 * 175.09821 * 7 6 5 9 9 N 1.34778 * 119.99967 * 355.37209 * 7 6 5 10 10 C 1.47069 * 136.05345 * 4.68134 * 9 7 6 11 11 C 1.53753 * 87.88646 * 152.96830 * 10 9 7 12 12 C 1.52998 * 114.09163 * 139.78052 * 11 10 9 13 13 N 1.46500 * 109.47111 * 91.55700 * 12 11 10 14 14 C 1.34779 * 119.99835 * 179.97438 * 13 12 11 15 15 O 1.21273 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99644 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.46902 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00069 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99918 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00375 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99994 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47093 * 89.99759 * 22 20 18 24 24 H 1.48496 * 109.47121 * 209.99864 * 22 20 18 25 25 H 1.48497 * 109.46841 * 329.99916 * 22 20 18 26 26 C 1.47061 * 136.06217 * 185.05973 * 9 7 6 27 27 H 1.09001 * 109.47306 * 274.90116 * 1 2 3 28 28 H 1.08997 * 109.47767 * 34.90649 * 1 2 3 29 29 H 1.09012 * 109.47154 * 154.90247 * 1 2 3 30 30 H 1.08008 * 125.41918 * 0.02562 * 3 2 1 31 31 H 1.08005 * 126.10599 * 180.30913 * 5 4 3 32 32 H 1.08999 * 113.47290 * 267.69761 * 10 9 7 33 33 H 1.08995 * 113.46922 * 38.14085 * 10 9 7 34 34 H 1.09009 * 114.57286 * 272.66517 * 11 10 9 35 35 H 1.08995 * 109.47622 * 211.56306 * 12 11 10 36 36 H 1.09000 * 109.46607 * 331.56139 * 12 11 10 37 37 H 0.97001 * 120.00224 * 0.02562 * 13 12 11 38 38 H 1.08995 * 109.47019 * 300.00319 * 16 14 13 39 39 H 1.09004 * 109.46741 * 60.00853 * 16 14 13 40 40 H 0.96994 * 120.00362 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.46262 * 321.86442 * 26 9 7 42 42 H 1.09003 * 113.46856 * 92.29615 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5137 0.6923 -0.0006 5 6 3.5690 -0.6397 0.0051 6 6 2.2862 -1.1109 -0.0007 7 6 1.8649 -2.5167 -0.0010 8 8 0.6841 -2.7981 0.0836 9 7 2.7864 -3.4964 -0.0893 10 6 4.2551 -3.5695 -0.1138 11 6 4.1377 -4.9838 0.4778 12 6 5.1217 -5.9932 -0.1170 13 7 6.3466 -6.0127 0.6863 14 6 7.3610 -6.8334 0.3485 15 8 7.2599 -7.5552 -0.6207 16 6 8.6209 -6.8538 1.1753 17 16 9.7849 -8.0478 0.4715 18 6 11.1255 -7.8706 1.6012 19 1 11.0511 -7.1728 2.4222 20 6 12.2774 -8.6269 1.4353 21 7 12.3683 -9.4770 0.4344 22 14 13.6984 -8.4395 2.6334 23 1 13.5293 -9.3973 3.7556 24 1 14.9771 -8.7193 1.9322 25 1 13.7182 -7.0530 3.1647 26 6 2.7658 -4.9619 -0.2101 27 1 -0.3634 0.0878 1.0239 28 1 -0.3634 0.8427 -0.5880 29 1 -0.3634 -0.9307 -0.4359 30 1 1.9287 2.1081 0.0004 31 1 4.4673 -1.2394 0.0107 32 1 4.6738 -3.5534 -1.1201 33 1 4.7365 -2.8562 0.5550 34 1 4.0914 -5.0174 1.5664 35 1 4.6702 -6.9852 -0.1153 36 1 5.3629 -5.7056 -1.1404 37 1 6.4274 -5.4356 1.4618 38 1 9.0727 -5.8619 1.1735 39 1 8.3792 -7.1413 2.1986 40 1 13.1731 -10.0058 0.3187 41 1 1.9782 -5.4347 0.3767 42 1 2.7918 -5.3127 -1.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356799553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:09 Heat of formation + Delta-G solvation = 38.115097 kcal Electronic energy + Delta-G solvation = -25243.270110 eV Core-core repulsion = 21352.651557 eV Total energy + Delta-G solvation = -3890.618552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.68483 -40.84936 -39.14023 -38.19581 -34.72235 -34.40058 -32.43621 -31.76730 -30.29053 -28.94673 -27.63219 -26.56348 -26.08169 -25.41250 -23.11150 -21.87374 -21.15938 -20.35358 -19.64033 -18.01240 -17.79191 -17.06929 -16.82740 -16.37885 -16.30296 -16.09471 -15.44481 -15.23742 -14.81013 -14.75595 -14.39581 -14.15317 -13.86310 -13.76890 -13.49824 -13.34869 -13.24704 -13.10813 -13.02893 -12.69075 -12.49896 -11.86571 -11.75445 -11.07714 -11.06302 -11.03211 -10.79552 -10.76036 -10.31060 -10.20605 -9.82702 -9.47528 -9.34124 -9.08155 -9.03838 -8.96275 -8.25120 -6.51219 -6.22526 -3.93260 0.82466 1.82166 2.37146 2.54157 2.87059 2.97489 3.05175 3.22068 3.26790 3.30527 3.56510 3.83250 3.85993 4.11221 4.19660 4.27435 4.35824 4.51667 4.56773 4.66663 4.75170 4.82149 4.87624 5.00667 5.01983 5.10915 5.12789 5.14581 5.22872 5.39925 5.52701 5.64064 5.66511 5.82635 5.87445 5.99523 6.12236 6.52150 6.52409 7.11788 7.37763 7.58754 7.62149 7.63464 8.34386 8.55766 9.22969 10.84857 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.001746 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.533535 B =16033.526593 C =16960.074074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.429 5.429 3 C 0.208 3.792 4 N -0.496 5.496 5 C 0.038 3.962 6 C -0.086 4.086 7 C 0.626 3.374 8 O -0.546 6.546 9 N -0.637 5.637 10 C 0.096 3.904 11 C -0.135 4.135 12 C 0.133 3.867 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.121 3.879 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.214 0.786 31 H 0.181 0.819 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.317 19.426 0.457 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.109 5.109 3 C -0.074 4.074 4 N -0.214 5.214 5 C -0.116 4.116 6 C -0.203 4.203 7 C 0.417 3.583 8 O -0.425 6.425 9 N -0.372 5.372 10 C -0.026 4.026 11 C -0.154 4.154 12 C 0.009 3.991 13 N -0.394 5.394 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.002 4.002 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.231 0.769 31 H 0.198 0.802 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.725 18.637 -1.222 30.987 hybrid contribution 0.334 0.887 2.247 2.439 sum -24.391 19.524 1.025 31.260 Atomic orbital electron populations 1.22323 0.75170 1.05937 1.04253 1.45280 1.08382 1.05721 1.51530 1.25217 0.85558 0.93658 1.03014 1.70208 1.18998 1.12144 1.20039 1.22964 0.95446 0.91334 1.01859 1.20606 0.91631 0.88492 1.19552 1.16135 0.83952 0.82169 0.76074 1.90798 1.16333 1.83589 1.51791 1.49067 1.07920 1.07631 1.72565 1.23519 0.80210 0.96630 1.02285 1.23293 0.95466 0.94834 1.01833 1.21135 0.84041 0.98829 0.95142 1.45971 1.16233 1.44717 1.32514 1.20313 0.83950 0.78873 0.84999 1.90711 1.80807 1.40042 1.27487 1.23534 0.97485 1.06720 1.02727 1.85401 1.10377 1.48499 1.39130 1.22866 1.02058 1.28334 1.15146 0.90900 1.24991 0.98117 0.94504 0.95960 1.70013 1.28328 1.23190 1.28741 0.86170 0.80483 0.78624 0.80240 1.20286 1.20758 1.19684 1.22980 0.96720 0.78828 1.01668 0.89970 0.89314 0.87684 0.76940 0.80178 0.88370 0.89404 0.86642 0.90630 0.90822 0.76680 0.89135 0.89189 0.92175 0.89539 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.78 59.84 0.64 0.97 16 2 N -0.43 -3.37 3.17 -121.97 -0.39 -3.76 16 3 C 0.21 1.49 12.52 -90.58 -1.13 0.36 16 4 N -0.50 -4.95 11.20 -14.43 -0.16 -5.11 16 5 C 0.04 0.35 11.07 -17.48 -0.19 0.16 16 6 C -0.09 -0.83 6.91 -82.14 -0.57 -1.40 16 7 C 0.63 6.57 8.03 -12.81 -0.10 6.46 16 8 O -0.55 -7.10 15.61 5.21 0.08 -7.02 16 9 N -0.64 -5.13 3.69 -186.60 -0.69 -5.82 16 10 C 0.10 0.54 6.63 -8.38 -0.06 0.49 16 11 C -0.13 -0.77 4.12 -89.97 -0.37 -1.14 16 12 C 0.13 1.14 5.59 -4.04 -0.02 1.12 16 13 N -0.74 -8.06 5.56 -60.30 -0.33 -8.39 16 14 C 0.53 9.04 7.85 -10.98 -0.09 8.96 16 15 O -0.52 -10.98 15.86 5.56 0.09 -10.89 16 16 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.12 0.78 8.19 -8.52 -0.07 0.71 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.74 6.33 -51.92 -0.33 0.41 16 30 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 31 H 0.18 1.28 5.21 -52.48 -0.27 1.01 16 32 H 0.10 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.09 0.41 6.32 -51.93 -0.33 0.08 16 34 H 0.12 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.67 7.80 -51.93 -0.40 0.26 16 37 H 0.40 3.17 8.47 -40.82 -0.35 2.83 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 39 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -39.00 373.86 -9.24 -48.25 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.44 Total: -1.36 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.54 Total: 1.28 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.84 Total: -48.18 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.00 -9.24 -48.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356799553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.363 kcal (2) G-P(sol) polarization free energy of solvation -39.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds