Wall clock time and date at job start Tue Mar 31 2020 20:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34492 * 126.47094 * 2 1 4 4 N 1.30858 * 109.16545 * 180.02562 * 3 2 1 5 5 C 1.33316 * 109.68234 * 359.72669 * 4 3 2 6 6 C 1.36658 * 107.78834 * 0.44385 * 5 4 3 7 7 C 1.46765 * 126.84853 * 179.83839 * 6 5 4 8 8 O 1.21681 * 120.00291 * 175.09821 * 7 6 5 9 9 N 1.34778 * 119.99967 * 355.37209 * 7 6 5 10 10 C 1.47069 * 136.05345 * 4.68134 * 9 7 6 11 11 C 1.53753 * 87.88646 * 152.96830 * 10 9 7 12 12 C 1.52998 * 114.09163 * 139.78052 * 11 10 9 13 13 N 1.46500 * 109.47111 * 91.55700 * 12 11 10 14 14 C 1.34779 * 119.99835 * 179.97438 * 13 12 11 15 15 O 1.21273 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99644 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.46902 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00069 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99918 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00375 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99994 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47093 * 89.99759 * 22 20 18 24 24 H 1.48496 * 109.47121 * 209.99864 * 22 20 18 25 25 H 1.48497 * 109.46841 * 329.99916 * 22 20 18 26 26 C 1.47061 * 136.06217 * 185.05973 * 9 7 6 27 27 H 1.09001 * 109.47306 * 274.90116 * 1 2 3 28 28 H 1.08997 * 109.47767 * 34.90649 * 1 2 3 29 29 H 1.09012 * 109.47154 * 154.90247 * 1 2 3 30 30 H 1.08008 * 125.41918 * 0.02562 * 3 2 1 31 31 H 1.08005 * 126.10599 * 180.30913 * 5 4 3 32 32 H 1.08999 * 113.47290 * 267.69761 * 10 9 7 33 33 H 1.08995 * 113.46922 * 38.14085 * 10 9 7 34 34 H 1.09009 * 114.57286 * 272.66517 * 11 10 9 35 35 H 1.08995 * 109.47622 * 211.56306 * 12 11 10 36 36 H 1.09000 * 109.46607 * 331.56139 * 12 11 10 37 37 H 0.97001 * 120.00224 * 0.02562 * 13 12 11 38 38 H 1.08995 * 109.47019 * 300.00319 * 16 14 13 39 39 H 1.09004 * 109.46741 * 60.00853 * 16 14 13 40 40 H 0.96994 * 120.00362 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.46262 * 321.86442 * 26 9 7 42 42 H 1.09003 * 113.46856 * 92.29615 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5137 0.6923 -0.0006 5 6 3.5690 -0.6397 0.0051 6 6 2.2862 -1.1109 -0.0007 7 6 1.8649 -2.5167 -0.0010 8 8 0.6841 -2.7981 0.0836 9 7 2.7864 -3.4964 -0.0893 10 6 4.2551 -3.5695 -0.1138 11 6 4.1377 -4.9838 0.4778 12 6 5.1217 -5.9932 -0.1170 13 7 6.3466 -6.0127 0.6863 14 6 7.3610 -6.8334 0.3485 15 8 7.2599 -7.5552 -0.6207 16 6 8.6209 -6.8538 1.1753 17 16 9.7849 -8.0478 0.4715 18 6 11.1255 -7.8706 1.6012 19 1 11.0511 -7.1728 2.4222 20 6 12.2774 -8.6269 1.4353 21 7 12.3683 -9.4770 0.4344 22 14 13.6984 -8.4395 2.6334 23 1 13.5293 -9.3973 3.7556 24 1 14.9771 -8.7193 1.9322 25 1 13.7182 -7.0530 3.1647 26 6 2.7658 -4.9619 -0.2101 27 1 -0.3634 0.0878 1.0239 28 1 -0.3634 0.8427 -0.5880 29 1 -0.3634 -0.9307 -0.4359 30 1 1.9287 2.1081 0.0004 31 1 4.4673 -1.2394 0.0107 32 1 4.6738 -3.5534 -1.1201 33 1 4.7365 -2.8562 0.5550 34 1 4.0914 -5.0174 1.5664 35 1 4.6702 -6.9852 -0.1153 36 1 5.3629 -5.7056 -1.1404 37 1 6.4274 -5.4356 1.4618 38 1 9.0727 -5.8619 1.1735 39 1 8.3792 -7.1413 2.1986 40 1 13.1731 -10.0058 0.3187 41 1 1.9782 -5.4347 0.3767 42 1 2.7918 -5.3127 -1.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356799553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:07 Heat of formation + Delta-G solvation = 9.678477 kcal Electronic energy + Delta-G solvation = -25244.503214 eV Core-core repulsion = 21352.651557 eV Total energy + Delta-G solvation = -3891.851657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.26905 -41.49475 -40.37659 -38.99685 -35.71343 -35.03809 -34.54925 -32.58196 -31.30676 -29.95179 -28.09246 -27.68888 -27.07743 -26.77931 -23.78900 -22.43673 -21.92471 -21.46446 -20.25955 -19.76471 -18.50301 -17.78450 -17.68696 -17.55724 -17.01552 -16.84707 -16.78254 -16.53350 -16.19375 -15.71795 -15.47954 -15.05053 -14.78293 -14.57885 -14.52152 -14.23314 -14.11849 -13.87480 -13.65678 -13.56360 -13.52688 -13.12686 -13.04535 -12.85905 -12.58955 -12.39756 -11.72671 -11.64618 -11.43295 -11.11297 -11.02179 -10.87584 -10.78940 -10.22227 -10.03065 -9.99905 -9.63410 -8.61836 -8.31588 -6.08663 0.19415 1.25469 1.32025 1.44525 1.50813 1.61009 1.70064 1.76107 2.00957 2.19404 2.29112 2.35370 3.02677 3.16180 3.26813 3.38323 3.66793 3.81232 3.87604 3.93237 4.03465 4.10528 4.21400 4.28482 4.33707 4.35552 4.38792 4.54684 4.58754 4.59605 4.64151 4.73116 4.77728 4.85692 5.10894 5.21183 5.39130 5.45468 5.51500 6.03538 6.23130 6.47052 6.59183 6.75873 6.94406 7.10197 7.33408 8.77418 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.001746 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.533535 B =16033.526593 C =16960.074074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.434 5.434 3 C 0.219 3.781 4 N -0.533 5.533 5 C 0.037 3.963 6 C -0.111 4.111 7 C 0.620 3.380 8 O -0.583 6.583 9 N -0.639 5.639 10 C 0.096 3.904 11 C -0.113 4.113 12 C 0.134 3.866 13 N -0.710 5.710 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.131 4.131 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.258 1.258 26 C 0.116 3.884 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.254 0.746 31 H 0.195 0.805 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.270 0.730 41 H 0.084 0.916 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.644 21.794 2.083 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.114 5.114 3 C -0.063 4.063 4 N -0.251 5.251 5 C -0.118 4.118 6 C -0.227 4.227 7 C 0.411 3.589 8 O -0.465 6.465 9 N -0.372 5.372 10 C -0.026 4.026 11 C -0.132 4.132 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.181 1.181 26 C -0.006 4.006 27 H 0.108 0.892 28 H 0.141 0.859 29 H 0.100 0.900 30 H 0.270 0.730 31 H 0.211 0.789 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.256 0.744 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.078 21.038 0.437 32.736 hybrid contribution 0.296 0.242 1.730 1.771 sum -24.781 21.279 2.166 32.736 Atomic orbital electron populations 1.22454 0.73807 1.06165 1.05242 1.45527 1.09324 1.05445 1.51099 1.26017 0.84822 0.94932 1.00535 1.70219 1.20645 1.12490 1.21787 1.23231 0.95827 0.91473 1.01232 1.20663 0.92277 0.88621 1.21163 1.16354 0.83779 0.82909 0.75854 1.90769 1.17754 1.84186 1.53788 1.49140 1.08782 1.07876 1.71424 1.23688 0.78931 0.96700 1.03254 1.23089 0.93956 0.93897 1.02297 1.21239 0.83212 0.99519 0.95006 1.45671 1.15279 1.42773 1.32722 1.19980 0.84457 0.79353 0.84146 1.90703 1.81704 1.42510 1.29560 1.23390 0.96580 1.04999 1.03262 1.85573 1.13319 1.52429 1.41358 1.23216 1.02406 1.28443 1.15228 0.89855 1.26102 1.01264 0.93957 0.97844 1.70180 1.29274 1.24395 1.30936 0.84980 0.76316 0.79291 0.77565 1.19430 1.20462 1.18147 1.23118 0.96964 0.78159 1.02406 0.89154 0.85942 0.89977 0.73025 0.78877 0.87468 0.87874 0.85254 0.91156 0.90875 0.74438 0.87053 0.87225 0.92075 0.89735 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.78 127.77 1.38 1.95 16 2 N -0.43 -6.24 3.17 -539.81 -1.71 -7.95 16 3 C 0.22 2.68 12.52 180.33 2.26 4.94 16 4 N -0.53 -9.80 11.20 -199.56 -2.24 -12.04 16 5 C 0.04 0.63 11.07 84.10 0.93 1.56 16 6 C -0.11 -2.05 6.91 40.01 0.28 -1.77 16 7 C 0.62 12.79 8.03 86.47 0.69 13.49 16 8 O -0.58 -15.43 15.61 -4.29 -0.07 -15.50 16 9 N -0.64 -9.51 3.69 -862.51 -3.18 -12.68 16 10 C 0.10 0.86 6.63 83.26 0.55 1.41 16 11 C -0.11 -1.01 4.12 -10.37 -0.04 -1.05 16 12 C 0.13 2.02 5.59 86.38 0.48 2.50 16 13 N -0.71 -13.67 5.56 -463.07 -2.57 -16.24 16 14 C 0.53 17.53 7.85 87.66 0.69 18.22 16 15 O -0.57 -24.26 15.86 -3.01 -0.05 -24.31 16 16 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 17 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 18 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 22 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C 0.12 1.33 8.19 83.17 0.68 2.01 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 1.17 6.33 -2.38 -0.02 1.15 16 30 H 0.25 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.19 2.42 5.21 -2.91 -0.02 2.41 16 32 H 0.11 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.10 0.65 6.32 -2.39 -0.02 0.64 16 34 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.19 7.80 -2.39 -0.02 1.17 16 37 H 0.42 5.09 8.47 -92.71 -0.79 4.31 16 38 H 0.11 3.61 8.14 -2.40 -0.02 3.60 16 39 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -88.40 373.86 1.07 -87.33 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.28 Total: 10.63 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 9.45 Total: 10.29 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -9.41 Total: -104.00 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.11 Total: -39.81 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -88.40 1.07 -87.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356799553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.013 kcal (2) G-P(sol) polarization free energy of solvation -88.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds