Wall clock time and date at job start Tue Mar 31 2020 20:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 119.99821 * 2 1 4 4 C 1.52998 * 109.47196 * 90.00252 * 3 2 1 5 5 N 1.46498 * 109.47199 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00164 * 269.99873 * 5 4 3 7 7 C 1.34786 * 120.00096 * 90.00107 * 5 4 3 8 8 O 1.21551 * 119.99711 * 4.78602 * 7 5 4 9 9 C 1.47831 * 120.00107 * 184.79148 * 7 5 4 10 10 C 1.39951 * 120.93745 * 322.12180 * 9 7 5 11 11 N 1.32145 * 118.92347 * 179.73209 * 10 9 7 12 12 C 1.31869 * 120.96730 * 0.25526 * 11 10 9 13 13 N 1.31873 * 122.09538 * 0.02562 * 12 11 10 14 14 C 1.32151 * 120.96536 * 359.97438 * 13 12 11 15 15 C 1.34772 * 119.99585 * 180.02562 * 2 1 3 16 16 O 1.21287 * 119.99761 * 180.02562 * 15 2 1 17 17 C 1.50702 * 120.00496 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47110 * 180.02562 * 17 15 2 19 19 C 1.76200 * 99.99830 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99847 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99982 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99851 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00025 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47107 * 89.99832 * 23 21 19 25 25 H 1.48499 * 109.47130 * 209.99835 * 23 21 19 26 26 H 1.48500 * 109.47017 * 330.00006 * 23 21 19 27 27 H 1.09001 * 109.46699 * 89.99733 * 1 2 3 28 28 H 1.08994 * 109.47180 * 209.99696 * 1 2 3 29 29 H 1.08997 * 109.46849 * 330.00391 * 1 2 3 30 30 H 1.09005 * 109.47630 * 329.99990 * 3 2 1 31 31 H 1.09004 * 109.47197 * 210.00132 * 3 2 1 32 32 H 1.08997 * 109.47208 * 59.99673 * 4 3 2 33 33 H 1.09004 * 109.46969 * 299.99474 * 4 3 2 34 34 H 1.09001 * 109.47254 * 264.80854 * 6 5 4 35 35 H 1.09000 * 109.47135 * 24.80610 * 6 5 4 36 36 H 1.08999 * 109.47320 * 144.80908 * 6 5 4 37 37 H 1.08000 * 120.54058 * 0.02562 * 10 9 7 38 38 H 1.08002 * 118.95385 * 180.02562 * 12 11 10 39 39 H 1.07993 * 120.53131 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.46835 * 300.00510 * 17 15 2 41 41 H 1.08997 * 109.46799 * 60.00202 * 17 15 2 42 42 H 0.97001 * 120.00108 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 7 3.1855 2.9788 1.4425 6 6 4.6505 2.9783 1.4426 7 6 2.5121 4.1463 1.4424 8 8 1.2998 4.1486 1.5301 9 6 3.2479 5.4241 1.3354 10 6 4.4782 5.6018 1.9784 11 7 5.1043 6.7586 1.8516 12 6 4.5838 7.7372 1.1371 13 7 3.4250 7.6142 0.5197 14 6 2.7313 6.4918 0.5929 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8481 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3762 -5.0304 -0.0012 21 6 1.9282 -6.5080 -0.0020 22 7 1.0914 -7.5242 -0.0021 23 14 3.7707 -6.8154 -0.0015 24 1 4.2584 -6.8979 1.3987 25 1 4.0597 -8.0924 -0.7023 26 1 4.4587 -5.7004 -0.7005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5138 31 1 3.1500 1.1384 -0.5139 32 1 3.0416 0.9507 1.9563 33 1 1.5001 1.8407 1.9563 34 1 5.0138 3.0712 2.4661 35 1 5.0136 2.0453 1.0116 36 1 5.0143 3.8179 0.8504 37 1 4.9112 4.8049 2.5647 38 1 5.1237 8.6689 1.0550 39 1 1.7833 6.3987 0.0842 40 1 0.7590 -2.5302 0.8897 41 1 0.7584 -2.5298 -0.8903 42 1 1.4315 -8.4326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357168831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:09 Heat of formation + Delta-G solvation = -22.853710 kcal Electronic energy + Delta-G solvation = -25865.129055 eV Core-core repulsion = 21971.866697 eV Total energy + Delta-G solvation = -3893.262358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41980 -41.10514 -40.46570 -37.38672 -36.44471 -34.90489 -34.66512 -33.74562 -32.02225 -29.93771 -28.19292 -27.85868 -27.56661 -26.13009 -25.60118 -24.23552 -21.10382 -20.70880 -19.58872 -19.07435 -18.70394 -18.33504 -18.10822 -17.53380 -17.33280 -17.05726 -16.66125 -16.35448 -15.71770 -15.55675 -15.27492 -15.06098 -14.90040 -14.73614 -14.66147 -14.36833 -14.23895 -14.02082 -13.63522 -13.37545 -13.35980 -13.19535 -13.10624 -12.99309 -12.80142 -12.65463 -12.09137 -11.96757 -11.85852 -11.25003 -11.16438 -10.98153 -10.79428 -10.52694 -10.46005 -10.24148 -9.58465 -8.99217 -8.50806 -6.21777 -0.63116 -0.11263 0.96945 1.32072 1.33463 1.46248 1.51948 1.54146 1.70226 2.17796 2.25644 2.62059 2.68679 2.87417 3.01826 3.04793 3.23605 3.34928 3.54113 3.77097 3.91895 3.96887 4.08858 4.15541 4.26917 4.29579 4.36312 4.44857 4.45963 4.56427 4.59914 4.65573 4.78672 4.86313 4.92948 5.12224 5.19469 5.48026 5.69137 5.71214 6.07764 6.12184 6.18550 6.81361 6.87024 6.94155 7.03374 8.61472 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.002018 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.760252 B =13871.787112 C =14564.040565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.109 3.891 4 C 0.107 3.893 5 N -0.600 5.600 6 C 0.060 3.940 7 C 0.572 3.428 8 O -0.559 6.559 9 C -0.247 4.247 10 C 0.183 3.817 11 N -0.533 5.533 12 C 0.312 3.688 13 N -0.536 5.536 14 C 0.200 3.800 15 C 0.535 3.465 16 O -0.554 6.554 17 C -0.108 4.108 18 S -0.172 6.172 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.261 1.261 26 H -0.235 1.235 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.202 0.798 38 H 0.232 0.768 39 H 0.184 0.816 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 30.581 2.781 31.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.015 4.015 4 C -0.017 4.017 5 N -0.331 5.331 6 C -0.081 4.081 7 C 0.359 3.641 8 O -0.438 6.438 9 C -0.255 4.255 10 C 0.016 3.984 11 N -0.246 5.246 12 C 0.026 3.974 13 N -0.250 5.250 14 C 0.034 3.966 15 C 0.322 3.678 16 O -0.432 6.432 17 C -0.259 4.259 18 S 0.054 5.946 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.185 1.185 26 H -0.159 1.159 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.218 0.782 38 H 0.248 0.752 39 H 0.200 0.800 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.125 31.269 2.742 32.188 hybrid contribution -1.661 -1.622 0.030 2.322 sum 5.464 29.648 2.772 30.274 Atomic orbital electron populations 1.22114 0.76905 1.04701 1.03502 1.47718 1.08450 1.04483 1.73463 1.21754 0.98066 0.84423 0.97265 1.21790 0.98362 0.84258 0.97276 1.47690 1.08416 1.04897 1.72126 1.22465 0.77201 1.04808 1.03648 1.18058 0.86484 0.83471 0.76061 1.90805 1.14675 1.87451 1.50841 1.21600 0.99761 0.97210 1.06882 1.24320 0.88051 0.95058 0.90941 1.68650 1.35670 1.01577 1.18705 1.25948 0.88215 0.98292 0.84899 1.68647 1.09167 1.24905 1.22269 1.23614 0.97732 0.85788 0.89505 1.20008 0.87327 0.85114 0.75318 1.90668 1.14936 1.87334 1.50270 1.23296 1.01873 0.93629 1.07104 1.84634 1.13614 0.98756 1.97568 1.22460 0.94409 0.92557 1.58259 0.92021 1.25584 1.02827 0.94778 0.92909 1.70022 1.36810 0.99527 1.49117 0.85853 0.80130 0.80071 0.80231 1.18623 1.18511 1.15921 0.90964 0.90254 0.88847 0.89051 0.90582 0.89890 0.89585 0.89207 0.89721 0.89897 0.78179 0.75225 0.79953 0.86931 0.87211 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.24 127.77 1.31 2.51 16 2 N -0.61 -14.33 2.87 -846.75 -2.43 -16.77 16 3 C 0.11 2.20 5.73 86.38 0.49 2.69 16 4 C 0.11 1.97 5.74 86.38 0.50 2.47 16 5 N -0.60 -9.02 2.87 -850.21 -2.44 -11.46 16 6 C 0.06 0.56 8.87 127.77 1.13 1.69 16 7 C 0.57 10.00 7.41 86.78 0.64 10.64 16 8 O -0.56 -13.45 16.48 -3.88 -0.06 -13.51 16 9 C -0.25 -3.46 5.29 -19.91 -0.11 -3.56 16 10 C 0.18 2.01 8.87 85.06 0.75 2.77 16 11 N -0.53 -6.58 10.42 -198.97 -2.07 -8.66 16 12 C 0.31 3.44 12.27 180.84 2.22 5.66 16 13 N -0.54 -7.65 10.42 -198.98 -2.07 -9.72 16 14 C 0.20 2.87 10.95 85.06 0.93 3.80 16 15 C 0.53 17.56 7.69 87.66 0.67 18.23 16 16 O -0.55 -21.83 15.44 -3.05 -0.05 -21.88 16 17 C -0.11 -3.96 4.71 71.24 0.34 -3.62 16 18 S -0.17 -8.47 18.55 -56.49 -1.05 -9.51 16 19 C -0.53 -30.33 10.04 67.95 0.68 -29.64 16 20 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 21 C 0.04 2.57 5.50 84.86 0.47 3.04 16 22 N -0.92 -55.28 13.97 21.65 0.30 -54.97 16 23 Si 0.92 44.22 27.74 68.60 1.90 46.12 16 24 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.24 -11.28 6.74 99.48 0.67 -10.61 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.38 6.44 -2.39 -0.02 1.37 16 29 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 30 H 0.09 1.63 8.07 -2.38 -0.02 1.61 16 31 H 0.08 1.73 7.42 -2.38 -0.02 1.71 16 32 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 33 H 0.09 1.70 7.36 -2.38 -0.02 1.68 16 34 H 0.09 0.44 6.88 -2.39 -0.02 0.42 16 35 H 0.08 0.92 8.03 -2.39 -0.02 0.91 16 36 H 0.08 0.61 5.83 -2.39 -0.01 0.59 16 37 H 0.20 1.18 5.28 -2.91 -0.02 1.17 16 38 H 0.23 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.11 3.79 7.40 -2.40 -0.02 3.77 16 41 H 0.11 3.76 8.11 -2.40 -0.02 3.74 16 42 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -77.74 370.60 3.07 -74.67 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.01 Total: 9.03 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 10.03 Total: 16.67 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -8.72 Total: -101.58 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.11 Total: -35.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.05 Total: -9.51 kcal Total: -77.74 3.07 -74.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357168831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.819 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds