Wall clock time and date at job start Tue Mar 31 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35041 * 124.88227 * 2 1 4 4 C 1.35362 * 107.22836 * 180.02562 * 3 2 1 5 5 C 1.41497 * 105.50236 * 0.25928 * 4 3 2 6 6 C 1.47718 * 126.51524 * 179.70396 * 5 4 3 7 7 O 1.21569 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99627 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99429 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46952 * 175.01598 * 9 8 6 11 11 H 1.09000 * 112.73711 * 314.98925 * 10 9 8 12 12 C 1.53490 * 113.46663 * 85.80576 * 10 9 8 13 13 C 1.53493 * 83.34461 * 140.84834 * 12 10 9 14 14 N 1.47061 * 113.46862 * 184.24496 * 10 9 8 15 15 C 1.34782 * 136.05872 * 38.13489 * 14 10 9 16 16 O 1.21285 * 119.99683 * 5.03296 * 15 14 10 17 17 C 1.50698 * 119.99925 * 185.03598 * 15 14 10 18 18 S 1.80995 * 109.46958 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00038 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00442 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99839 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47074 * 90.00362 * 23 21 19 25 25 H 1.48491 * 109.46933 * 210.00312 * 23 21 19 26 26 H 1.48503 * 109.47259 * 330.00266 * 23 21 19 27 27 N 1.28464 * 124.88912 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47144 * 90.00499 * 1 2 3 29 29 H 1.09000 * 109.47124 * 209.99855 * 1 2 3 30 30 H 1.08995 * 109.47666 * 329.99917 * 1 2 3 31 31 H 1.08002 * 126.38243 * 0.03584 * 3 2 1 32 32 H 1.08000 * 127.24803 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00317 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47620 * 295.01618 * 9 8 6 35 35 H 1.08996 * 109.46879 * 55.01992 * 9 8 6 36 36 H 1.08997 * 114.21165 * 254.43698 * 12 10 9 37 37 H 1.09008 * 114.20631 * 27.26640 * 12 10 9 38 38 H 1.08994 * 113.47545 * 219.15173 * 13 12 10 39 39 H 1.09005 * 113.46335 * 88.71072 * 13 12 10 40 40 H 1.08995 * 109.47267 * 299.99741 * 17 15 14 41 41 H 1.08996 * 109.46825 * 60.00034 * 17 15 14 42 42 H 0.97002 * 119.99934 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5271 0.6973 -0.0006 5 6 3.4740 -0.7167 -0.0071 6 6 4.6274 -1.6396 -0.0163 7 8 5.7598 -1.1973 -0.0194 8 7 4.4242 -2.9719 -0.0223 9 6 5.5681 -3.8872 -0.0320 10 6 5.0690 -5.3286 0.0880 11 1 4.3027 -5.4466 0.8541 12 6 4.6902 -5.9584 -1.2594 13 6 5.3419 -7.2098 -0.6551 14 7 6.1530 -6.3174 0.1867 15 6 7.3589 -6.3791 0.7857 16 8 7.7219 -5.4781 1.5119 17 6 8.2559 -7.5674 0.5530 18 16 9.7917 -7.3560 1.4871 19 6 10.6267 -8.8429 1.0436 20 1 10.1551 -9.5485 0.3758 21 6 11.8907 -9.1073 1.5526 22 7 12.5146 -10.2179 1.2209 23 14 12.7068 -7.8866 2.7072 24 1 12.3453 -8.2140 4.1098 25 1 14.1810 -7.9618 2.5455 26 1 12.2429 -6.5134 2.3842 27 7 2.1998 -1.0537 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.8904 2.1306 0.0005 32 1 4.4108 1.3183 -0.0004 33 1 3.5207 -3.3248 -0.0210 34 1 6.1193 -3.7701 -0.9650 35 1 6.2235 -3.6585 0.8084 36 1 3.6166 -6.0491 -1.4244 37 1 5.2261 -5.5435 -2.1132 38 1 5.9296 -7.7827 -1.3723 39 1 4.6478 -7.8296 -0.0875 40 1 7.7506 -8.4745 0.8845 41 1 8.4853 -7.6469 -0.5096 42 1 13.3978 -10.4029 1.5769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358609426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:10 Heat of formation + Delta-G solvation = 56.279569 kcal Electronic energy + Delta-G solvation = -25468.638356 eV Core-core repulsion = 21578.807474 eV Total energy + Delta-G solvation = -3889.830882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00277 -40.62278 -39.29195 -37.60097 -34.81054 -33.88280 -32.41672 -31.23878 -30.79971 -29.08532 -28.26419 -27.45900 -25.58466 -24.02521 -22.61100 -22.11391 -21.86438 -20.40093 -19.01543 -18.24456 -17.71025 -16.91546 -16.74426 -16.68091 -16.30929 -15.46758 -15.27825 -15.11834 -14.86408 -14.51452 -14.31270 -14.00834 -13.89673 -13.70488 -13.45908 -13.19370 -13.09933 -12.86563 -12.76446 -12.69671 -12.16769 -12.00304 -11.68714 -11.33886 -11.23486 -10.98021 -10.82784 -10.59376 -10.30956 -9.82665 -9.67427 -9.51258 -9.44725 -9.13912 -8.97915 -8.72036 -8.47156 -6.89589 -6.26722 -3.98396 1.25591 1.78659 2.01218 2.45733 2.90066 2.97941 3.23781 3.27431 3.36159 3.54506 3.60912 3.90930 4.05673 4.35701 4.37438 4.45393 4.48568 4.50532 4.62132 4.76421 4.77407 4.84533 4.93328 5.05090 5.12500 5.18604 5.29694 5.31972 5.41538 5.47446 5.63770 5.74305 5.77040 5.91682 5.99844 6.03571 6.03796 6.26491 6.31745 7.21894 7.54347 7.75829 7.96287 8.05356 8.42957 8.43646 9.19543 10.82400 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.002010 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.997033 B =13930.406607 C =14869.434992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.286 5.286 3 C -0.020 4.020 4 C -0.177 4.177 5 C -0.014 4.014 6 C 0.603 3.397 7 O -0.524 6.524 8 N -0.714 5.714 9 C 0.112 3.888 10 C 0.124 3.876 11 H 0.096 0.904 12 C -0.152 4.152 13 C 0.101 3.899 14 N -0.646 5.646 15 C 0.559 3.441 16 O -0.510 6.510 17 C -0.115 4.115 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.264 5.264 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.405 0.595 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.797 18.321 -6.595 36.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.074 5.074 3 C -0.162 4.162 4 C -0.205 4.205 5 C -0.174 4.174 6 C 0.387 3.613 7 O -0.398 6.398 8 N -0.366 5.366 9 C -0.012 4.012 10 C 0.020 3.980 11 H 0.114 0.886 12 C -0.190 4.190 13 C -0.022 4.022 14 N -0.385 5.385 15 C 0.349 3.651 16 O -0.384 6.384 17 C -0.265 4.265 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.158 1.158 27 N -0.100 5.100 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.200 0.800 32 H 0.181 0.819 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.837 18.901 -5.375 35.726 hybrid contribution 0.033 -0.310 -0.296 0.430 sum -29.804 18.590 -5.671 35.581 Atomic orbital electron populations 1.22190 0.73115 1.05566 1.04528 1.45403 1.07827 1.03151 1.51052 1.22884 0.90958 0.93773 1.08626 1.21833 0.97462 0.93557 1.07643 1.21945 0.90593 0.94305 1.10599 1.16848 0.86626 0.81318 0.76516 1.90853 1.22527 1.76951 1.49449 1.45637 1.10351 1.05411 1.75241 1.21628 0.88418 0.86827 1.04332 1.22765 0.88899 0.89350 0.97025 0.88615 1.23600 1.01909 0.96737 0.96743 1.22914 0.92626 0.94267 0.92421 1.49702 1.15629 1.19310 1.53910 1.19970 0.79390 0.87938 0.77806 1.90730 1.72768 1.39461 1.35438 1.23204 0.99606 0.98206 1.05488 1.84831 1.12190 1.31384 1.63012 1.22308 1.05127 1.04535 1.34903 0.89391 1.24705 0.95878 0.95141 0.95534 1.69938 1.14429 1.23865 1.43447 0.86742 0.79469 0.83844 0.81867 1.19207 1.19911 1.15849 1.73470 1.02949 1.14246 1.19371 0.89623 0.88457 0.88552 0.79971 0.81867 0.76058 0.90652 0.89025 0.89113 0.88311 0.89810 0.89589 0.88646 0.88462 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.31 59.85 0.68 0.82 16 2 N -0.29 -1.87 3.70 -68.13 -0.25 -2.12 16 3 C -0.02 -0.12 11.46 -17.17 -0.20 -0.32 16 4 C -0.18 -1.68 10.81 -39.37 -0.43 -2.11 16 5 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 6 C 0.60 8.20 7.83 -12.39 -0.10 8.11 16 7 O -0.52 -9.21 16.92 5.30 0.09 -9.12 16 8 N -0.71 -7.94 5.55 -61.29 -0.34 -8.28 16 9 C 0.11 1.45 5.47 -4.04 -0.02 1.43 16 10 C 0.12 1.30 4.07 -72.41 -0.29 1.01 16 11 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.15 -1.10 8.02 -26.22 -0.21 -1.31 16 13 C 0.10 0.90 8.42 -8.52 -0.07 0.83 16 14 N -0.65 -8.86 3.57 -177.48 -0.63 -9.49 16 15 C 0.56 10.59 7.97 -10.98 -0.09 10.50 16 16 O -0.51 -11.64 15.46 5.55 0.09 -11.55 16 17 C -0.11 -2.32 5.99 36.00 0.22 -2.10 16 18 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 19 C -0.52 -15.27 10.04 30.94 0.31 -14.96 16 20 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 22 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 23 Si 0.86 22.25 27.74 -169.99 -4.72 17.53 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.23 -6.13 6.74 56.52 0.38 -5.75 16 27 N -0.26 -2.49 11.67 33.42 0.39 -2.10 16 28 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 29 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 -0.08 8.13 -51.93 -0.42 -0.50 16 31 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.40 3.40 8.20 -40.82 -0.33 3.07 16 34 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 35 H 0.09 1.56 7.14 -51.93 -0.37 1.19 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.75 7.95 -51.92 -0.41 0.34 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 41 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 42 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -40.03 378.98 -7.53 -47.55 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.76 Total: -0.28 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.89 Total: 3.90 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.06 Total: -48.08 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.18 Total: -20.68 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.72 Total: 17.53 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.03 -7.53 -47.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358609426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.833 kcal (2) G-P(sol) polarization free energy of solvation -40.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds