Wall clock time and date at job start Tue Mar 31 2020 20:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34494 * 126.46810 * 2 1 4 4 N 1.30860 * 109.16083 * 180.27546 * 3 2 1 5 5 C 1.33319 * 109.68245 * 359.72130 * 4 3 2 6 6 C 1.36663 * 107.78712 * 0.02562 * 5 4 3 7 7 C 1.46770 * 126.84584 * 180.02562 * 6 5 4 8 8 O 1.21684 * 119.99630 * 354.07075 * 7 6 5 9 9 N 1.34765 * 120.00036 * 174.07401 * 7 6 5 10 10 C 1.46503 * 119.99982 * 184.90729 * 9 7 6 11 11 C 1.53003 * 109.47039 * 184.96576 * 10 9 7 12 12 H 1.08999 * 112.74302 * 45.76748 * 11 10 9 13 13 C 1.53502 * 113.46319 * 274.94209 * 11 10 9 14 14 C 1.53497 * 83.34357 * 219.15485 * 13 11 10 15 15 N 1.47069 * 87.98745 * 26.06748 * 14 13 11 16 16 C 1.34776 * 136.05789 * 152.83784 * 15 14 13 17 17 O 1.21274 * 119.99893 * 185.04398 * 16 15 14 18 18 C 1.50703 * 119.99903 * 5.05034 * 16 15 14 19 19 S 1.80993 * 109.47069 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00120 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00306 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99627 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46981 * 60.00312 * 24 22 20 26 26 H 1.48497 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47432 * 300.00326 * 24 22 20 28 28 H 1.08992 * 109.47277 * 263.41142 * 1 2 3 29 29 H 1.09001 * 109.47337 * 23.41601 * 1 2 3 30 30 H 1.09002 * 109.47111 * 143.41266 * 1 2 3 31 31 H 1.07999 * 125.42289 * 359.97438 * 3 2 1 32 32 H 1.07996 * 126.10549 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00575 * 4.90309 * 9 7 6 34 34 H 1.09007 * 109.46938 * 304.95931 * 10 9 7 35 35 H 1.08995 * 109.47233 * 64.96093 * 10 9 7 36 36 H 1.08990 * 114.20782 * 332.74187 * 13 11 10 37 37 H 1.09007 * 114.20051 * 105.56869 * 13 11 10 38 38 H 1.09000 * 113.46873 * 271.29310 * 14 13 11 39 39 H 1.08999 * 113.46723 * 140.84936 * 14 13 11 40 40 H 1.09001 * 109.46666 * 299.99357 * 18 16 15 41 41 H 1.08996 * 109.47522 * 59.99104 * 18 16 15 42 42 H 0.96995 * 119.99591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0816 0.0000 4 7 3.5138 0.6923 -0.0059 5 6 3.5691 -0.6398 -0.0039 6 6 2.2862 -1.1108 0.0032 7 6 1.8649 -2.5167 0.0083 8 8 2.6938 -3.4006 -0.1026 9 7 0.5600 -2.8287 0.1356 10 6 0.1497 -4.2305 0.2488 11 6 -1.3780 -4.3157 0.2567 12 1 -1.8384 -3.6991 -0.5153 13 6 -1.9941 -4.1163 1.6484 14 6 -2.9499 -5.2256 1.1880 15 7 -1.8875 -5.6950 0.2857 16 6 -1.5353 -6.8715 -0.2694 17 8 -0.5177 -6.9526 -0.9242 18 6 -2.4061 -8.0863 -0.0767 19 16 -1.6710 -9.4984 -0.9378 20 6 -2.8589 -10.7422 -0.5554 21 1 -3.7198 -10.4990 0.0497 22 6 -2.6884 -12.0347 -1.0320 23 7 -1.6390 -12.3312 -1.7691 24 14 -3.9483 -13.3531 -0.6272 25 1 -5.2757 -12.9482 -1.1555 26 1 -3.5387 -14.6372 -1.2506 27 1 -4.0323 -13.5220 0.8457 28 1 -0.3633 -0.1179 1.0208 29 1 -0.3634 0.9430 -0.4084 30 1 -0.3633 -0.8252 -0.6125 31 1 1.9288 2.1081 -0.0004 32 1 4.4672 -1.2394 -0.0072 33 1 -0.1076 -2.1251 0.1524 34 1 0.5405 -4.7931 -0.5991 35 1 0.5418 -4.6502 1.1751 36 1 -1.3402 -4.4031 2.4719 37 1 -2.4708 -3.1465 1.7913 38 1 -3.8296 -4.8511 0.6646 39 1 -3.1981 -5.9387 1.9741 40 1 -2.4864 -8.3106 0.9870 41 1 -3.3985 -7.8901 -0.4825 42 1 -1.5201 -13.2343 -2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358620083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:50 Heat of formation + Delta-G solvation = 46.701552 kcal Electronic energy + Delta-G solvation = -25846.039825 eV Core-core repulsion = 21955.793609 eV Total energy + Delta-G solvation = -3890.246216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.65631 -40.69373 -39.34888 -37.60658 -35.53434 -34.22539 -32.45090 -31.03987 -30.45594 -28.62212 -28.15838 -27.80762 -25.49999 -24.21390 -22.63840 -22.18765 -21.76981 -20.91583 -19.08074 -18.23374 -17.74957 -16.80232 -16.75049 -16.53911 -16.42262 -15.48059 -15.33667 -15.08439 -14.84744 -14.82300 -14.41830 -14.29907 -13.95511 -13.82563 -13.75435 -13.47172 -13.17950 -12.86322 -12.71481 -12.54746 -12.25459 -12.01693 -11.75777 -11.08454 -11.05679 -10.92948 -10.80189 -10.78459 -10.27604 -10.22290 -9.85947 -9.58677 -9.33674 -9.08133 -8.98775 -8.75419 -8.27066 -6.53250 -6.23321 -3.94781 0.91807 2.04258 2.40350 2.46808 2.88422 3.01777 3.04953 3.21792 3.22942 3.27507 3.52127 3.91736 3.93545 4.09378 4.15647 4.17930 4.35243 4.43153 4.54790 4.61582 4.65510 4.83985 4.85447 5.04763 5.11611 5.15190 5.20745 5.33725 5.46000 5.47581 5.54579 5.72886 5.76432 5.87725 5.88963 6.07615 6.09350 6.15527 6.52882 7.02152 7.49331 7.56914 7.72667 7.83832 8.32733 8.45291 9.21441 10.84023 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.001999 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.264641 B =14001.721788 C =14797.814426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.450 5.450 3 C 0.211 3.789 4 N -0.499 5.499 5 C 0.070 3.930 6 C -0.090 4.090 7 C 0.593 3.407 8 O -0.513 6.513 9 N -0.732 5.732 10 C 0.110 3.890 11 C 0.122 3.878 12 H 0.093 0.907 13 C -0.154 4.154 14 C 0.102 3.898 15 N -0.646 5.646 16 C 0.561 3.439 17 O -0.506 6.506 18 C -0.144 4.144 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.213 0.787 32 H 0.185 0.815 33 H 0.392 0.608 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 29.858 7.962 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.134 5.134 3 C -0.071 4.071 4 N -0.216 5.216 5 C -0.084 4.084 6 C -0.205 4.205 7 C 0.379 3.621 8 O -0.387 6.387 9 N -0.389 5.389 10 C -0.013 4.013 11 C 0.017 3.983 12 H 0.111 0.889 13 C -0.192 4.192 14 C -0.021 4.021 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.378 6.378 18 C -0.295 4.295 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.202 0.798 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.588 29.157 6.692 29.920 hybrid contribution -3.290 -0.888 0.954 3.539 sum -3.878 28.268 7.646 29.540 Atomic orbital electron populations 1.22364 0.76405 1.05593 1.04343 1.45467 1.07660 1.06686 1.53608 1.25187 0.85649 0.93562 1.02712 1.70265 1.18878 1.12128 1.20380 1.22680 0.95612 0.90466 0.99647 1.21235 0.92302 0.87334 1.19632 1.16818 0.82502 0.85939 0.76874 1.90925 1.51715 1.47428 1.48650 1.46214 1.07474 1.09354 1.75877 1.21689 0.93531 0.81378 1.04743 1.22756 0.93923 0.84351 0.97235 0.88903 1.23622 0.99213 0.99644 0.96683 1.22878 0.91903 0.95059 0.92309 1.49742 1.31436 1.06267 1.51211 1.20042 0.85791 0.81864 0.77247 1.90740 1.25124 1.83465 1.38505 1.23476 1.02185 0.97983 1.05828 1.85458 1.33312 0.97958 1.66411 1.22807 1.10667 0.96212 1.38837 0.90980 1.25001 0.96165 0.97856 0.94561 1.70006 1.26972 1.20765 1.32411 0.86212 0.80658 0.79825 0.78730 1.19953 1.20771 1.19920 0.89295 0.87821 0.89333 0.77047 0.79796 0.76943 0.88633 0.90527 0.88291 0.89346 0.89713 0.89870 0.89295 0.89288 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.08 9.70 59.85 0.58 0.66 16 2 N -0.45 -2.78 3.17 -121.97 -0.39 -3.17 16 3 C 0.21 1.35 12.51 -90.57 -1.13 0.22 16 4 N -0.50 -5.08 11.20 -14.43 -0.16 -5.24 16 5 C 0.07 0.76 11.66 -17.48 -0.20 0.56 16 6 C -0.09 -0.91 6.91 -82.14 -0.57 -1.48 16 7 C 0.59 7.26 7.78 -12.82 -0.10 7.16 16 8 O -0.51 -8.66 16.89 5.20 0.09 -8.57 16 9 N -0.73 -6.75 5.47 -61.59 -0.34 -7.09 16 10 C 0.11 1.32 5.40 -4.04 -0.02 1.29 16 11 C 0.12 1.13 4.08 -72.38 -0.30 0.84 16 12 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.15 -0.91 8.02 -26.21 -0.21 -1.12 16 14 C 0.10 0.82 8.42 -8.50 -0.07 0.75 16 15 N -0.65 -8.47 3.57 -177.42 -0.63 -9.10 16 16 C 0.56 10.58 8.02 -10.98 -0.09 10.49 16 17 O -0.51 -11.63 15.26 5.56 0.08 -11.55 16 18 C -0.14 -2.93 5.99 36.01 0.22 -2.71 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.10 -0.12 8.13 -51.93 -0.42 -0.54 16 30 H 0.09 0.14 6.02 -51.93 -0.31 -0.18 16 31 H 0.21 0.39 8.06 -52.49 -0.42 -0.04 16 32 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.39 2.10 4.30 -40.82 -0.18 1.92 16 34 H 0.10 1.57 7.04 -51.93 -0.37 1.21 16 35 H 0.08 1.00 7.91 -51.93 -0.41 0.58 16 36 H 0.10 0.65 7.96 -51.93 -0.41 0.24 16 37 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -40.72 374.28 -9.35 -50.08 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.45 Total: -1.72 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.70 Total: 3.68 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.78 Total: -50.09 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.17 Total: -20.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.72 -9.35 -50.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358620083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.778 kcal (2) G-P(sol) polarization free energy of solvation -40.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds