Wall clock time and date at job start Tue Mar 31 2020 20:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34494 * 126.46810 * 2 1 4 4 N 1.30860 * 109.16083 * 180.27546 * 3 2 1 5 5 C 1.33319 * 109.68245 * 359.72130 * 4 3 2 6 6 C 1.36663 * 107.78712 * 0.02562 * 5 4 3 7 7 C 1.46770 * 126.84584 * 180.02562 * 6 5 4 8 8 O 1.21684 * 119.99630 * 354.07075 * 7 6 5 9 9 N 1.34765 * 120.00036 * 174.07401 * 7 6 5 10 10 C 1.46503 * 119.99982 * 184.90729 * 9 7 6 11 11 C 1.53003 * 109.47039 * 184.96576 * 10 9 7 12 12 H 1.08999 * 112.74302 * 45.76748 * 11 10 9 13 13 C 1.53502 * 113.46319 * 274.94209 * 11 10 9 14 14 C 1.53497 * 83.34357 * 219.15485 * 13 11 10 15 15 N 1.47069 * 87.98745 * 26.06748 * 14 13 11 16 16 C 1.34776 * 136.05789 * 152.83784 * 15 14 13 17 17 O 1.21274 * 119.99893 * 185.04398 * 16 15 14 18 18 C 1.50703 * 119.99903 * 5.05034 * 16 15 14 19 19 S 1.80993 * 109.47069 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00120 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00306 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99627 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00001 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46981 * 60.00312 * 24 22 20 26 26 H 1.48497 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47432 * 300.00326 * 24 22 20 28 28 H 1.08992 * 109.47277 * 263.41142 * 1 2 3 29 29 H 1.09001 * 109.47337 * 23.41601 * 1 2 3 30 30 H 1.09002 * 109.47111 * 143.41266 * 1 2 3 31 31 H 1.07999 * 125.42289 * 359.97438 * 3 2 1 32 32 H 1.07996 * 126.10549 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00575 * 4.90309 * 9 7 6 34 34 H 1.09007 * 109.46938 * 304.95931 * 10 9 7 35 35 H 1.08995 * 109.47233 * 64.96093 * 10 9 7 36 36 H 1.08990 * 114.20782 * 332.74187 * 13 11 10 37 37 H 1.09007 * 114.20051 * 105.56869 * 13 11 10 38 38 H 1.09000 * 113.46873 * 271.29310 * 14 13 11 39 39 H 1.08999 * 113.46723 * 140.84936 * 14 13 11 40 40 H 1.09001 * 109.46666 * 299.99357 * 18 16 15 41 41 H 1.08996 * 109.47522 * 59.99104 * 18 16 15 42 42 H 0.96995 * 119.99591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0816 0.0000 4 7 3.5138 0.6923 -0.0059 5 6 3.5691 -0.6398 -0.0039 6 6 2.2862 -1.1108 0.0032 7 6 1.8649 -2.5167 0.0083 8 8 2.6938 -3.4006 -0.1026 9 7 0.5600 -2.8287 0.1356 10 6 0.1497 -4.2305 0.2488 11 6 -1.3780 -4.3157 0.2567 12 1 -1.8384 -3.6991 -0.5153 13 6 -1.9941 -4.1163 1.6484 14 6 -2.9499 -5.2256 1.1880 15 7 -1.8875 -5.6950 0.2857 16 6 -1.5353 -6.8715 -0.2694 17 8 -0.5177 -6.9526 -0.9242 18 6 -2.4061 -8.0863 -0.0767 19 16 -1.6710 -9.4984 -0.9378 20 6 -2.8589 -10.7422 -0.5554 21 1 -3.7198 -10.4990 0.0497 22 6 -2.6884 -12.0347 -1.0320 23 7 -1.6390 -12.3312 -1.7691 24 14 -3.9483 -13.3531 -0.6272 25 1 -5.2757 -12.9482 -1.1555 26 1 -3.5387 -14.6372 -1.2506 27 1 -4.0323 -13.5220 0.8457 28 1 -0.3633 -0.1179 1.0208 29 1 -0.3634 0.9430 -0.4084 30 1 -0.3633 -0.8252 -0.6125 31 1 1.9288 2.1081 -0.0004 32 1 4.4672 -1.2394 -0.0072 33 1 -0.1076 -2.1251 0.1524 34 1 0.5405 -4.7931 -0.5991 35 1 0.5418 -4.6502 1.1751 36 1 -1.3402 -4.4031 2.4719 37 1 -2.4708 -3.1465 1.7913 38 1 -3.8296 -4.8511 0.6646 39 1 -3.1981 -5.9387 1.9741 40 1 -2.4864 -8.3106 0.9870 41 1 -3.3985 -7.8901 -0.4825 42 1 -1.5201 -13.2343 -2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358620083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:49 Heat of formation + Delta-G solvation = 15.259109 kcal Electronic energy + Delta-G solvation = -25847.403271 eV Core-core repulsion = 21955.793609 eV Total energy + Delta-G solvation = -3891.609662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.27731 -41.65911 -40.37232 -38.92975 -36.37359 -34.87090 -34.61282 -32.27804 -31.33453 -29.49101 -29.34928 -28.12654 -27.66986 -24.98829 -23.42932 -23.12101 -22.38573 -21.72668 -20.29620 -19.52185 -18.87355 -18.05131 -17.52506 -17.39550 -17.12272 -16.90925 -16.74455 -16.42732 -16.02400 -15.79081 -15.63976 -15.30449 -14.97715 -14.74447 -14.51399 -14.45561 -14.02407 -13.85361 -13.81146 -13.44487 -13.25590 -13.18498 -12.99737 -12.87811 -12.66153 -12.43951 -11.79595 -11.78098 -11.62289 -11.15082 -11.08471 -10.89566 -10.74088 -10.44036 -10.31405 -9.81427 -9.69192 -8.71814 -8.36660 -6.16455 0.18401 1.15055 1.38574 1.42737 1.51025 1.52590 1.57899 1.76067 1.79512 2.17120 2.20883 2.25580 2.97243 3.16643 3.30867 3.43898 3.61604 3.69333 3.76266 3.79321 3.93338 4.00571 4.15381 4.22745 4.34957 4.42008 4.46108 4.50722 4.57536 4.61990 4.63649 4.72238 4.92121 4.93579 4.95686 5.12273 5.30855 5.38372 5.38469 6.07917 6.16913 6.25177 6.58501 6.86517 6.95319 7.03751 7.09101 8.72445 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.001999 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.264641 B =14001.721788 C =14797.814426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.440 5.440 3 C 0.233 3.767 4 N -0.538 5.538 5 C 0.049 3.951 6 C -0.107 4.107 7 C 0.590 3.410 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.117 3.883 11 C 0.119 3.881 12 H 0.127 0.873 13 C -0.126 4.126 14 C 0.095 3.905 15 N -0.651 5.651 16 C 0.555 3.445 17 O -0.566 6.566 18 C -0.116 4.116 19 S -0.157 6.157 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.087 0.913 31 H 0.263 0.737 32 H 0.170 0.830 33 H 0.415 0.585 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 33.390 9.949 35.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.123 5.123 3 C -0.050 4.050 4 N -0.256 5.256 5 C -0.105 4.105 6 C -0.223 4.223 7 C 0.378 3.622 8 O -0.454 6.454 9 N -0.364 5.364 10 C -0.008 4.008 11 C 0.016 3.984 12 H 0.144 0.856 13 C -0.163 4.163 14 C -0.026 4.026 15 N -0.388 5.388 16 C 0.344 3.656 17 O -0.444 6.444 18 C -0.267 4.267 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.184 1.184 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.132 0.868 29 H 0.159 0.841 30 H 0.105 0.895 31 H 0.279 0.721 32 H 0.188 0.812 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.217 32.789 8.731 34.330 hybrid contribution -1.921 -1.720 0.388 2.608 sum -7.138 31.069 9.119 33.157 Atomic orbital electron populations 1.22863 0.73179 1.07695 1.06263 1.45666 1.09411 1.05033 1.52156 1.26138 0.84511 0.95183 0.99154 1.70233 1.21574 1.11431 1.22363 1.22675 0.95972 0.91343 1.00558 1.20783 0.92836 0.87209 1.21441 1.17188 0.82751 0.86443 0.75823 1.90892 1.53477 1.49400 1.51590 1.45937 1.07103 1.08898 1.74493 1.21424 0.95765 0.82060 1.01525 1.23221 0.91751 0.82332 1.01105 0.85563 1.23604 0.97594 1.01548 0.93549 1.23381 0.92123 0.95506 0.91608 1.49801 1.33100 1.05991 1.49919 1.19730 0.84984 0.83396 0.77446 1.90722 1.27392 1.84741 1.41524 1.23251 1.02438 0.95596 1.05417 1.85693 1.36058 1.02484 1.68768 1.23151 1.10710 0.96573 1.38915 0.89760 1.26199 0.98456 1.00631 0.94081 1.70191 1.29392 1.21413 1.33861 0.84960 0.77721 0.76008 0.79027 1.18421 1.20457 1.18540 0.86820 0.84062 0.89465 0.72106 0.81234 0.74187 0.94012 0.92283 0.88915 0.83755 0.86391 0.89429 0.87719 0.87407 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.08 9.70 127.77 1.24 1.16 16 2 N -0.44 -4.17 3.17 -539.81 -1.71 -5.88 16 3 C 0.23 2.25 12.51 180.33 2.26 4.51 16 4 N -0.54 -10.62 11.20 -199.56 -2.24 -12.85 16 5 C 0.05 1.14 11.66 84.10 0.98 2.12 16 6 C -0.11 -2.16 6.91 40.01 0.28 -1.88 16 7 C 0.59 15.19 7.78 86.48 0.67 15.87 16 8 O -0.57 -21.51 16.89 -4.30 -0.07 -21.58 16 9 N -0.71 -12.52 5.47 -467.00 -2.55 -15.08 16 10 C 0.12 2.87 5.40 86.38 0.47 3.34 16 11 C 0.12 1.90 4.08 41.80 0.17 2.07 16 12 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 13 C -0.13 -0.84 8.02 30.93 0.25 -0.59 16 14 C 0.09 1.09 8.42 83.18 0.70 1.79 16 15 N -0.65 -16.00 3.57 -833.62 -2.97 -18.97 16 16 C 0.56 21.44 8.02 87.66 0.70 22.14 16 17 O -0.57 -27.93 15.26 -3.01 -0.05 -27.98 16 18 C -0.12 -4.74 5.99 71.24 0.43 -4.31 16 19 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 20 C -0.55 -31.54 9.50 67.96 0.65 -30.90 16 21 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -57.09 13.22 21.65 0.29 -56.81 16 24 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.14 -1.25 8.13 -2.39 -0.02 -1.27 16 30 H 0.09 -0.12 6.02 -2.39 -0.01 -0.14 16 31 H 0.26 -0.47 8.06 -2.91 -0.02 -0.50 16 32 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.41 3.14 4.30 -92.71 -0.40 2.74 16 34 H 0.04 1.51 7.04 -2.38 -0.02 1.50 16 35 H 0.06 1.63 7.91 -2.39 -0.02 1.61 16 36 H 0.09 0.84 7.96 -2.39 -0.02 0.83 16 37 H 0.14 -0.44 8.14 -2.38 -0.02 -0.46 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 3.88 8.14 -2.39 -0.02 3.87 16 41 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -101.96 374.28 1.47 -100.49 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.66 Total: 6.60 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 9.25 Total: 16.40 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -9.19 Total: -109.59 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.12 Total: -49.56 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -101.96 1.47 -100.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358620083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.747 kcal (2) G-P(sol) polarization free energy of solvation -101.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds