Wall clock time and date at job start Tue Mar 31 2020 20:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00401 * 2 1 4 4 O 1.21634 * 120.00301 * 180.51154 * 3 2 1 5 5 C 1.47168 * 119.99764 * 0.50627 * 3 2 1 6 6 C 1.38403 * 126.88309 * 9.24568 * 5 3 2 7 7 C 1.39676 * 105.35668 * 179.91380 * 6 5 3 8 8 N 1.30862 * 107.86111 * 0.35383 * 7 6 5 9 9 N 1.28442 * 110.92826 * 359.76820 * 8 7 6 10 10 C 1.46500 * 125.18769 * 180.02562 * 9 8 7 11 11 C 1.46507 * 119.99921 * 179.97438 * 2 1 3 12 12 C 1.53495 * 114.20705 * 300.00071 * 11 2 1 13 13 N 1.47064 * 87.98683 * 87.71309 * 12 11 2 14 14 C 1.34775 * 136.06424 * 207.08245 * 13 12 11 15 15 O 1.21284 * 119.99590 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00527 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47036 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99780 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00427 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00230 * 179.72470 * 18 17 16 21 21 N 1.31633 * 119.99525 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00445 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46631 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47038 * 119.99911 * 22 20 18 25 25 H 1.48497 * 109.47217 * 240.00072 * 22 20 18 26 26 C 1.47066 * 87.88518 * 27.34474 * 13 12 11 27 27 H 1.08999 * 109.47247 * 276.33440 * 1 2 3 28 28 H 1.09001 * 109.46898 * 36.32860 * 1 2 3 29 29 H 1.09001 * 109.47144 * 156.33130 * 1 2 3 30 30 H 1.08004 * 127.32222 * 0.02863 * 6 5 3 31 31 H 1.08002 * 126.06479 * 180.09139 * 7 6 5 32 32 H 1.09003 * 109.46902 * 264.72292 * 10 9 8 33 33 H 1.08994 * 109.47314 * 24.72889 * 10 9 8 34 34 H 1.08993 * 109.47029 * 144.73008 * 10 9 8 35 35 H 1.08993 * 113.28194 * 166.93269 * 11 2 1 36 36 H 1.09004 * 113.46553 * 332.93902 * 12 11 2 37 37 H 1.08995 * 113.46888 * 202.49926 * 12 11 2 38 38 H 1.08999 * 109.46954 * 59.99672 * 16 14 13 39 39 H 1.09002 * 109.46623 * 300.00155 * 16 14 13 40 40 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.47324 * 87.42996 * 26 13 12 42 42 H 1.08996 * 113.47224 * 217.88052 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3552 1.1671 -0.0094 5 6 1.4032 2.4416 0.0113 6 6 0.0430 2.6139 0.2003 7 6 -0.1689 3.9926 0.1277 8 7 0.9866 4.5651 -0.0950 9 7 1.9250 3.6911 -0.1685 10 6 3.3392 3.9890 -0.4082 11 6 2.1975 -1.2688 0.0006 12 6 1.9060 -2.1633 1.2134 13 7 0.7772 -2.7291 0.4594 14 6 -0.4052 -3.2994 0.7644 15 8 -0.7319 -3.4345 1.9246 16 6 -1.3215 -3.7693 -0.3359 17 16 -2.8183 -4.4833 0.3891 18 6 -3.6833 -4.9352 -1.0779 19 1 -3.2441 -4.7409 -2.0453 20 6 -4.9268 -5.5455 -0.9903 21 7 -5.4601 -5.7863 0.1888 22 14 -5.8442 -6.0239 -2.5456 23 1 -5.0356 -5.6473 -3.7329 24 1 -6.0778 -7.4904 -2.5513 25 1 -7.1482 -5.3148 -2.5891 26 6 1.5093 -2.4048 -0.7742 27 1 -0.3634 0.1134 1.0214 28 1 -0.3633 0.8279 -0.6088 29 1 -0.3633 -0.9412 -0.4126 30 1 -0.6970 1.8457 0.3700 31 1 -1.1185 4.4963 0.2321 32 1 3.5561 3.8902 -1.4719 33 1 3.5556 5.0076 -0.0864 34 1 3.9582 3.2908 0.1551 35 1 3.2575 -1.1544 -0.2258 36 1 1.6005 -1.6070 2.0996 37 1 2.6957 -2.8856 1.4199 38 1 -0.8121 -4.5238 -0.9355 39 1 -1.5922 -2.9242 -0.9689 40 1 -6.3293 -6.2125 0.2501 41 1 2.1946 -3.1907 -1.0917 42 1 0.8662 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358720795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:30 Heat of formation + Delta-G solvation = 89.303355 kcal Electronic energy + Delta-G solvation = -26665.636541 eV Core-core repulsion = 22777.237678 eV Total energy + Delta-G solvation = -3888.398863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.88684 -41.10041 -39.21881 -37.62234 -35.37149 -33.47320 -32.48190 -31.52474 -30.40593 -28.19503 -27.76163 -26.97663 -26.10412 -25.49887 -24.01329 -22.26697 -21.08082 -20.01896 -18.93191 -17.88903 -17.57074 -17.23306 -16.69078 -16.66427 -16.02830 -15.69457 -15.50782 -15.19831 -14.85172 -14.51555 -14.46123 -13.98819 -13.81003 -13.60138 -13.46331 -13.17099 -13.11295 -12.77750 -12.66533 -12.62341 -12.07490 -12.00241 -11.93543 -11.31203 -11.11138 -11.06503 -10.88934 -10.80384 -10.44583 -9.86950 -9.54874 -9.50009 -9.31759 -9.12565 -9.06979 -8.72858 -8.30424 -6.57216 -6.27066 -3.98495 0.90291 1.93890 2.31329 2.62902 2.64501 2.77906 2.96693 3.18025 3.20754 3.27218 3.48477 3.93120 4.05723 4.14608 4.23312 4.38430 4.76349 4.79506 4.82673 4.85504 4.91645 4.94345 5.08505 5.14266 5.18030 5.20442 5.26398 5.31437 5.41093 5.41943 5.43342 5.52021 5.61165 5.79322 5.87447 6.04505 6.06708 6.18024 6.38077 6.84394 7.54678 7.58740 7.72390 7.76441 8.30001 8.43049 9.18509 10.80354 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002567 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.235696 B =10906.658305 C =11869.991111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.574 5.574 3 C 0.597 3.403 4 O -0.543 6.543 5 C -0.040 4.040 6 C -0.200 4.200 7 C -0.004 4.004 8 N -0.277 5.277 9 N -0.259 5.259 10 C 0.085 3.915 11 C 0.107 3.893 12 C 0.094 3.906 13 N -0.654 5.654 14 C 0.561 3.439 15 O -0.510 6.510 16 C -0.146 4.146 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.092 3.908 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.102 0.898 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.509 16.661 -3.499 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.305 5.305 3 C 0.386 3.614 4 O -0.421 6.421 5 C -0.168 4.168 6 C -0.228 4.228 7 C -0.179 4.179 8 N -0.110 5.110 9 N -0.047 5.047 10 C -0.055 4.055 11 C 0.002 3.998 12 C -0.031 4.031 13 N -0.393 5.393 14 C 0.351 3.649 15 O -0.383 6.383 16 C -0.296 4.296 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.032 4.032 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.199 0.801 31 H 0.206 0.794 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.933 17.342 -1.802 25.012 hybrid contribution -0.758 -1.059 -2.206 2.562 sum 17.175 16.283 -4.008 24.004 Atomic orbital electron populations 1.22735 0.78290 1.04943 1.03104 1.47009 1.07500 1.04068 1.71897 1.16865 0.86135 0.82146 0.76289 1.90771 1.12913 1.87161 1.51228 1.21213 0.94044 0.87613 1.13927 1.23196 0.94299 0.98185 1.07130 1.23698 0.96462 0.92641 1.05138 1.73228 0.97515 1.20765 1.19539 1.45620 1.08537 1.02197 1.48319 1.22341 0.74777 1.04459 1.03941 1.22379 0.97667 0.82295 0.97503 1.23360 0.88395 0.94402 0.96919 1.49834 1.16720 1.62949 1.09831 1.19960 0.79321 0.75330 0.90314 1.90736 1.73146 1.53493 1.20905 1.23499 1.02064 1.03976 1.00079 1.85445 1.10113 1.76320 1.11326 1.22880 1.06159 1.46305 0.92983 0.90876 1.24999 0.96447 0.94957 0.97167 1.70024 1.17279 1.39937 1.22950 0.86112 0.79344 0.78324 0.81691 1.19606 1.20556 1.20511 1.23425 0.94435 0.95179 0.90170 0.91308 0.88846 0.89743 0.80132 0.79425 0.89806 0.88704 0.87246 0.85099 0.90071 0.88641 0.89278 0.89410 0.92173 0.88050 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 7.94 59.85 0.48 0.96 16 2 N -0.57 -5.57 3.12 -174.92 -0.55 -6.12 16 3 C 0.60 6.53 7.65 -12.64 -0.10 6.43 16 4 O -0.54 -6.69 14.31 5.25 0.08 -6.62 16 5 C -0.04 -0.43 6.80 -82.06 -0.56 -0.98 16 6 C -0.20 -1.87 8.87 -38.98 -0.35 -2.22 16 7 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 8 N -0.28 -3.04 11.90 30.59 0.36 -2.68 16 9 N -0.26 -2.71 3.75 -63.88 -0.24 -2.95 16 10 C 0.08 0.63 10.78 59.85 0.65 1.27 16 11 C 0.11 0.92 4.68 -67.67 -0.32 0.60 16 12 C 0.09 0.95 8.24 -8.51 -0.07 0.88 16 13 N -0.65 -8.28 2.40 -185.08 -0.44 -8.73 16 14 C 0.56 10.02 7.48 -10.99 -0.08 9.94 16 15 O -0.51 -11.33 16.64 5.55 0.09 -11.23 16 16 C -0.15 -2.80 5.98 36.01 0.22 -2.58 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -14.77 9.50 30.94 0.29 -14.47 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 22 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.09 0.79 7.45 -8.37 -0.06 0.73 16 27 H 0.07 0.68 7.64 -51.93 -0.40 0.29 16 28 H 0.09 0.75 4.90 -51.93 -0.25 0.49 16 29 H 0.08 0.89 5.02 -51.93 -0.26 0.63 16 30 H 0.18 1.39 4.62 -52.48 -0.24 1.15 16 31 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.86 6.45 -51.93 -0.34 0.52 16 35 H 0.13 1.00 7.28 -51.93 -0.38 0.62 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.71 7.40 -51.93 -0.38 0.32 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -36.59 364.13 -7.10 -43.69 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.18 Total: -0.39 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.21 Total: 2.27 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.13 Total: -45.32 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.59 -7.10 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358720795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.990 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds