Wall clock time and date at job start Tue Mar 31 2020 20:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00401 * 2 1 4 4 O 1.21634 * 120.00301 * 180.51154 * 3 2 1 5 5 C 1.47168 * 119.99764 * 0.50627 * 3 2 1 6 6 C 1.38403 * 126.88309 * 9.24568 * 5 3 2 7 7 C 1.39676 * 105.35668 * 179.91380 * 6 5 3 8 8 N 1.30862 * 107.86111 * 0.35383 * 7 6 5 9 9 N 1.28442 * 110.92826 * 359.76820 * 8 7 6 10 10 C 1.46500 * 125.18769 * 180.02562 * 9 8 7 11 11 C 1.46507 * 119.99921 * 179.97438 * 2 1 3 12 12 C 1.53495 * 114.20705 * 300.00071 * 11 2 1 13 13 N 1.47064 * 87.98683 * 87.71309 * 12 11 2 14 14 C 1.34775 * 136.06424 * 207.08245 * 13 12 11 15 15 O 1.21284 * 119.99590 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00527 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47036 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99780 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00427 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00230 * 179.72470 * 18 17 16 21 21 N 1.31633 * 119.99525 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00445 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46631 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47038 * 119.99911 * 22 20 18 25 25 H 1.48497 * 109.47217 * 240.00072 * 22 20 18 26 26 C 1.47066 * 87.88518 * 27.34474 * 13 12 11 27 27 H 1.08999 * 109.47247 * 276.33440 * 1 2 3 28 28 H 1.09001 * 109.46898 * 36.32860 * 1 2 3 29 29 H 1.09001 * 109.47144 * 156.33130 * 1 2 3 30 30 H 1.08004 * 127.32222 * 0.02863 * 6 5 3 31 31 H 1.08002 * 126.06479 * 180.09139 * 7 6 5 32 32 H 1.09003 * 109.46902 * 264.72292 * 10 9 8 33 33 H 1.08994 * 109.47314 * 24.72889 * 10 9 8 34 34 H 1.08993 * 109.47029 * 144.73008 * 10 9 8 35 35 H 1.08993 * 113.28194 * 166.93269 * 11 2 1 36 36 H 1.09004 * 113.46553 * 332.93902 * 12 11 2 37 37 H 1.08995 * 113.46888 * 202.49926 * 12 11 2 38 38 H 1.08999 * 109.46954 * 59.99672 * 16 14 13 39 39 H 1.09002 * 109.46623 * 300.00155 * 16 14 13 40 40 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.47324 * 87.42996 * 26 13 12 42 42 H 1.08996 * 113.47224 * 217.88052 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3552 1.1671 -0.0094 5 6 1.4032 2.4416 0.0113 6 6 0.0430 2.6139 0.2003 7 6 -0.1689 3.9926 0.1277 8 7 0.9866 4.5651 -0.0950 9 7 1.9250 3.6911 -0.1685 10 6 3.3392 3.9890 -0.4082 11 6 2.1975 -1.2688 0.0006 12 6 1.9060 -2.1633 1.2134 13 7 0.7772 -2.7291 0.4594 14 6 -0.4052 -3.2994 0.7644 15 8 -0.7319 -3.4345 1.9246 16 6 -1.3215 -3.7693 -0.3359 17 16 -2.8183 -4.4833 0.3891 18 6 -3.6833 -4.9352 -1.0779 19 1 -3.2441 -4.7409 -2.0453 20 6 -4.9268 -5.5455 -0.9903 21 7 -5.4601 -5.7863 0.1888 22 14 -5.8442 -6.0239 -2.5456 23 1 -5.0356 -5.6473 -3.7329 24 1 -6.0778 -7.4904 -2.5513 25 1 -7.1482 -5.3148 -2.5891 26 6 1.5093 -2.4048 -0.7742 27 1 -0.3634 0.1134 1.0214 28 1 -0.3633 0.8279 -0.6088 29 1 -0.3633 -0.9412 -0.4126 30 1 -0.6970 1.8457 0.3700 31 1 -1.1185 4.4963 0.2321 32 1 3.5561 3.8902 -1.4719 33 1 3.5556 5.0076 -0.0864 34 1 3.9582 3.2908 0.1551 35 1 3.2575 -1.1544 -0.2258 36 1 1.6005 -1.6070 2.0996 37 1 2.6957 -2.8856 1.4199 38 1 -0.8121 -4.5238 -0.9355 39 1 -1.5922 -2.9242 -0.9689 40 1 -6.3293 -6.2125 0.2501 41 1 2.1946 -3.1907 -1.0917 42 1 0.8662 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358720795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:28 Heat of formation + Delta-G solvation = 63.981659 kcal Electronic energy + Delta-G solvation = -26666.734572 eV Core-core repulsion = 22777.237678 eV Total energy + Delta-G solvation = -3889.496894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.62376 -42.01222 -40.23351 -38.84676 -36.21717 -34.57334 -34.16972 -32.50093 -31.58115 -29.30502 -28.53592 -27.71224 -27.64562 -26.87758 -24.87640 -23.01350 -22.02405 -20.85905 -20.08568 -19.47905 -18.48804 -18.07228 -17.91089 -17.42794 -16.93572 -16.87338 -16.82249 -16.55755 -16.20149 -15.72997 -15.39049 -15.16577 -14.85583 -14.59506 -14.36431 -14.27200 -14.15960 -13.76099 -13.50297 -13.42829 -13.34613 -13.16726 -12.95364 -12.90902 -12.71387 -12.56879 -12.13548 -11.70699 -11.63987 -11.29648 -11.14858 -10.91151 -10.32448 -10.26265 -10.04547 -9.88797 -9.77757 -8.66248 -8.33813 -6.11780 0.12110 1.21506 1.23130 1.42507 1.44166 1.55470 1.58230 1.59054 1.93125 1.98029 1.99106 2.27938 3.00831 3.16763 3.18656 3.30881 3.54820 3.59127 3.88094 4.04663 4.10746 4.15786 4.28959 4.30772 4.32939 4.42052 4.44990 4.49128 4.56719 4.59053 4.62763 4.65538 4.73128 4.75395 4.81284 4.90401 5.30732 5.43529 5.48855 5.68895 6.03345 6.21200 6.57661 6.78184 7.01628 7.08029 7.10517 8.75488 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002567 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.235696 B =10906.658305 C =11869.991111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.573 5.573 3 C 0.598 3.402 4 O -0.559 6.559 5 C -0.058 4.058 6 C -0.199 4.199 7 C -0.009 4.009 8 N -0.297 5.297 9 N -0.266 5.266 10 C 0.081 3.919 11 C 0.116 3.884 12 C 0.091 3.909 13 N -0.650 5.650 14 C 0.563 3.437 15 O -0.566 6.566 16 C -0.119 4.119 17 S -0.149 6.149 18 C -0.542 4.542 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.274 1.274 26 C 0.096 3.904 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.194 0.806 31 H 0.214 0.786 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.136 0.864 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.768 17.247 -5.939 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.303 5.303 3 C 0.387 3.613 4 O -0.438 6.438 5 C -0.186 4.186 6 C -0.228 4.228 7 C -0.183 4.183 8 N -0.131 5.131 9 N -0.055 5.055 10 C -0.058 4.058 11 C 0.011 3.989 12 C -0.032 4.032 13 N -0.387 5.387 14 C 0.353 3.647 15 O -0.445 6.445 16 C -0.270 4.270 17 S 0.078 5.922 18 C -0.690 4.690 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.027 4.027 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.211 0.789 31 H 0.231 0.769 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.256 17.956 -4.280 26.674 hybrid contribution -0.990 -1.134 -1.427 2.074 sum 18.265 16.823 -5.707 25.479 Atomic orbital electron populations 1.22716 0.78215 1.05043 1.02826 1.47072 1.07583 1.04263 1.71413 1.16915 0.85945 0.82449 0.76000 1.90759 1.13511 1.87414 1.52158 1.21374 0.94668 0.87784 1.14805 1.23419 0.94153 0.98664 1.06546 1.24210 0.97073 0.92807 1.04255 1.73215 0.98179 1.21374 1.20293 1.45902 1.09296 1.02067 1.48189 1.22498 0.73512 1.05221 1.04611 1.22417 0.98521 0.81569 0.96344 1.23656 0.87667 0.95085 0.96839 1.49732 1.15701 1.60471 1.12769 1.19579 0.80634 0.75585 0.88907 1.90714 1.74784 1.56325 1.22638 1.23282 0.98795 1.04566 1.00331 1.85638 1.14976 1.77643 1.13945 1.23201 1.06527 1.46078 0.93162 0.89880 1.26109 0.97479 0.94754 1.00787 1.70188 1.17851 1.41094 1.25656 0.84923 0.77852 0.77890 0.77401 1.17918 1.20163 1.19964 1.23783 0.94287 0.95825 0.88764 0.92197 0.87332 0.90598 0.78900 0.76937 0.88728 0.87146 0.87828 0.83133 0.91818 0.85974 0.87700 0.87288 0.92031 0.84659 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 7.94 127.77 1.01 1.95 16 2 N -0.57 -10.04 3.12 -825.56 -2.57 -12.61 16 3 C 0.60 12.19 7.65 86.59 0.66 12.85 16 4 O -0.56 -12.92 14.31 -4.14 -0.06 -12.98 16 5 C -0.06 -1.17 6.80 40.79 0.28 -0.90 16 6 C -0.20 -3.49 8.87 22.66 0.20 -3.29 16 7 C -0.01 -0.15 12.03 85.18 1.02 0.88 16 8 N -0.30 -6.19 11.90 -57.14 -0.68 -6.87 16 9 N -0.27 -5.30 3.75 -356.03 -1.33 -6.64 16 10 C 0.08 1.11 10.78 127.77 1.38 2.49 16 11 C 0.12 1.66 4.68 45.55 0.21 1.88 16 12 C 0.09 1.66 8.24 83.18 0.69 2.35 16 13 N -0.65 -15.20 2.40 -857.86 -2.06 -17.26 16 14 C 0.56 19.87 7.48 87.66 0.66 20.53 16 15 O -0.57 -25.87 16.64 -3.04 -0.05 -25.92 16 16 C -0.12 -4.46 5.98 71.24 0.43 -4.03 16 17 S -0.15 -8.02 20.57 -56.49 -1.16 -9.19 16 18 C -0.54 -29.93 9.50 67.96 0.65 -29.28 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 22 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.10 1.30 7.45 83.27 0.62 1.92 16 27 H 0.06 1.16 7.64 -2.39 -0.02 1.15 16 28 H 0.11 1.55 4.90 -2.39 -0.01 1.54 16 29 H 0.08 1.47 5.02 -2.39 -0.01 1.45 16 30 H 0.19 2.72 4.62 -2.91 -0.01 2.71 16 31 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.55 6.45 -2.39 -0.02 1.53 16 35 H 0.15 1.74 7.28 -2.39 -0.02 1.73 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 3.60 8.14 -2.40 -0.02 3.58 16 39 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.20 7.40 -2.39 -0.02 1.18 16 Total: -1.00 -82.09 364.13 3.73 -78.36 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.06 Total: 14.70 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 8.27 Total: 8.55 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -6.36 Total: -98.03 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.11 Total: -38.90 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.19 kcal Total: -82.09 3.73 -78.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358720795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.338 kcal (2) G-P(sol) polarization free energy of solvation -82.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds