Wall clock time and date at job start Tue Mar 31 2020 20:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47025 * 2 1 4 4 C 1.46490 * 120.00180 * 274.11286 * 3 2 1 5 5 C 1.53000 * 109.47348 * 83.07605 * 4 3 2 6 6 H 1.09002 * 109.47280 * 305.59445 * 5 4 3 7 7 C 1.52999 * 109.47054 * 65.59516 * 5 4 3 8 8 C 1.47201 * 109.47295 * 185.59442 * 5 4 3 9 9 N 5.55432 * 85.11082 * 312.90230 * 2 1 3 10 10 S 1.65601 * 119.99807 * 93.83674 * 3 2 1 11 11 O 1.42102 * 106.40206 * 195.94441 * 10 3 2 12 12 O 1.42106 * 106.40334 * 328.86274 * 10 3 2 13 13 N 1.65598 * 107.21933 * 82.40063 * 10 3 2 14 14 C 1.38819 * 119.99890 * 64.01793 * 13 10 3 15 15 C 1.39799 * 119.58694 * 196.68294 * 14 13 10 16 16 C 1.38597 * 119.49051 * 179.76778 * 15 14 13 17 17 C 1.38386 * 118.68133 * 0.49979 * 16 15 14 18 18 C 1.40553 * 119.15208 * 359.75014 * 17 16 15 19 19 C 1.41315 * 119.79045 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99620 * 13.46286 * 19 18 17 21 21 C 1.40017 * 120.00489 * 193.46223 * 19 18 17 22 22 N 1.30743 * 120.00089 * 10.44156 * 21 19 18 23 23 Si 1.86799 * 120.00021 * 190.44060 * 21 19 18 24 24 H 1.48498 * 109.47345 * 90.00399 * 23 21 19 25 25 H 1.48505 * 109.47090 * 209.99903 * 23 21 19 26 26 H 1.48496 * 109.47221 * 330.00158 * 23 21 19 27 27 N 1.31957 * 119.58295 * 16.96176 * 14 13 10 28 28 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47259 * 300.00162 * 1 2 3 30 30 H 1.09000 * 109.46993 * 60.00290 * 1 2 3 31 31 H 1.08995 * 109.47579 * 240.00451 * 2 1 3 32 32 H 1.09000 * 109.46993 * 119.99710 * 2 1 3 33 33 H 1.09002 * 109.47342 * 203.07808 * 4 3 2 34 34 H 1.09004 * 109.47082 * 323.07478 * 4 3 2 35 35 H 1.09006 * 109.47002 * 299.88542 * 7 5 4 36 36 H 1.08997 * 109.47371 * 59.88447 * 7 5 4 37 37 H 1.09001 * 109.47435 * 179.88760 * 7 5 4 38 38 H 0.96999 * 120.00166 * 244.01512 * 13 10 3 39 39 H 1.07994 * 120.25024 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.65668 * 180.24787 * 16 15 14 41 41 H 1.07994 * 120.42739 * 179.76975 * 17 16 15 42 42 H 0.97002 * 120.00652 * 184.65731 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1767 2.1022 -1.2654 5 6 0.8291 2.6894 -1.6900 6 1 0.0815 1.8969 -1.7224 7 6 0.3976 3.7567 -0.6822 8 6 0.9575 3.2978 -3.0242 9 7 1.0566 3.7673 -4.0538 10 16 2.3848 2.1299 1.4310 11 8 2.4583 3.5207 1.1489 12 8 1.5104 1.5800 2.4070 13 7 3.9143 1.6570 1.8540 14 6 4.9941 2.0019 1.0526 15 6 6.2092 1.3274 1.2037 16 6 7.2845 1.6701 0.3992 17 6 7.1233 2.6843 -0.5284 18 6 5.8782 3.3286 -0.6290 19 6 5.6984 4.3656 -1.5720 20 1 6.4285 4.5175 -2.3533 21 6 4.5739 5.1962 -1.4936 22 7 3.7996 5.1505 -0.4411 23 14 4.1801 6.3696 -2.8926 24 1 3.3004 5.6891 -3.8767 25 1 3.4864 7.5671 -2.3539 26 1 5.4400 6.7855 -3.5595 27 7 4.8622 2.9662 0.1615 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8996 2.9078 -1.1366 34 1 2.5316 1.4148 -2.0332 35 1 0.3006 3.3057 0.3055 36 1 1.1462 4.5482 -0.6482 37 1 -0.5614 4.1764 -0.9857 38 1 4.0559 1.1389 2.6618 39 1 6.3080 0.5425 1.9388 40 1 8.2306 1.1587 0.4973 41 1 7.9435 2.9768 -1.1671 42 1 2.9844 5.6757 -0.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434648643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:29 Heat of formation + Delta-G solvation = -3.777806 kcal Electronic energy + Delta-G solvation = -29565.144996 eV Core-core repulsion = 25672.709831 eV Total energy + Delta-G solvation = -3892.435165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.54672 -37.93616 -36.57528 -35.91708 -35.04124 -34.66829 -33.19446 -32.87178 -30.55908 -29.95799 -28.86741 -26.12902 -25.57010 -23.20180 -22.13381 -21.82410 -21.42360 -18.79618 -17.98597 -17.75368 -17.15285 -16.43167 -16.27557 -15.49685 -14.92788 -14.75650 -14.63566 -14.19069 -13.88200 -13.81698 -13.55138 -13.20817 -13.01521 -12.82897 -12.71697 -12.42961 -12.25402 -12.15287 -11.98460 -11.63543 -11.54211 -11.50197 -11.39614 -11.13566 -11.07962 -10.96766 -10.83244 -10.72224 -10.62013 -10.59157 -10.39047 -10.17452 -10.05864 -9.17737 -8.88333 -8.24548 -7.74892 -7.27611 -6.47641 -4.53141 1.16715 2.72666 2.90996 3.02174 3.06565 3.14225 3.15211 3.24704 3.36543 3.98256 3.99119 4.27043 4.65275 4.91105 5.05427 5.18523 5.20268 5.25515 5.34305 5.46545 5.54234 5.66713 5.78065 5.85966 5.97133 6.00938 6.04040 6.08349 6.28093 6.30795 6.40501 6.59938 6.65764 6.69123 6.71638 6.94688 7.01847 7.22662 7.47794 7.52493 7.66200 7.84533 8.02063 8.19726 8.63135 8.85153 9.83924 10.28544 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.008232 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.939730 B = 3400.684136 C = 5262.117828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.120 3.880 5 C -0.018 4.018 6 H 0.110 0.890 7 C -0.142 4.142 8 C 0.217 3.783 9 N -0.436 5.436 10 S 2.768 3.232 11 O -0.893 6.893 12 O -1.002 7.002 13 N -1.048 6.048 14 C 0.386 3.614 15 C -0.341 4.341 16 C -0.034 4.034 17 C -0.296 4.296 18 C 0.290 3.710 19 C -0.427 4.427 20 H 0.084 0.916 21 C 0.070 3.930 22 N -0.665 5.665 23 Si 0.872 3.128 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.518 5.518 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.415 0.585 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -8.148 1.908 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.006 4.006 3 N -0.829 5.829 4 C -0.007 4.007 5 C -0.042 4.042 6 H 0.128 0.872 7 C -0.200 4.200 8 C -0.102 4.102 9 N -0.112 5.112 10 S 2.775 3.225 11 O -0.875 6.875 12 O -0.987 6.987 13 N -0.797 5.797 14 C 0.148 3.852 15 C -0.369 4.369 16 C -0.058 4.058 17 C -0.319 4.319 18 C 0.166 3.834 19 C -0.458 4.458 20 H 0.102 0.898 21 C -0.160 4.160 22 N -0.285 5.285 23 Si 0.696 3.304 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.187 1.187 27 N -0.239 5.239 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.249 0.751 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.436 -6.149 0.757 9.678 hybrid contribution 0.923 -0.810 0.120 1.234 sum -6.513 -6.959 0.877 9.571 Atomic orbital electron populations 1.22391 0.96249 1.02120 1.02867 1.21175 0.94335 0.82328 1.02741 1.57873 1.79526 1.22763 1.22755 1.21637 0.95358 0.98691 0.85053 1.19527 1.01631 0.98411 0.84598 0.87207 1.21903 1.02199 0.98998 0.96903 1.28996 0.93230 0.93524 0.94417 1.81178 1.08320 1.09032 1.12640 1.02851 0.72445 0.74820 0.72360 1.93839 1.84602 1.26582 1.82504 1.93580 1.63660 1.81444 1.59969 1.53586 1.24003 1.68521 1.33560 1.18006 0.85328 0.90740 0.91151 1.20616 0.95374 1.09912 1.10963 1.20661 0.96186 0.95064 0.93921 1.21635 0.98948 1.05021 1.06295 1.18037 0.85756 0.90769 0.88852 1.19522 1.06214 1.09531 1.10499 0.89789 1.25981 0.96540 0.97589 0.95860 1.70031 1.07768 1.27590 1.23085 0.86839 0.80048 0.80787 0.82767 1.18266 1.20204 1.18674 1.67945 1.33391 1.12450 1.10097 0.91892 0.91497 0.92071 0.90619 0.90940 0.83523 0.90948 0.92228 0.89045 0.92516 0.75146 0.88818 0.88477 0.88223 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 10.01 37.16 0.37 -1.45 16 2 C 0.12 1.41 6.07 -4.04 -0.02 1.39 16 3 N -0.99 -14.87 2.58 -114.38 -0.30 -15.16 16 4 C 0.12 1.93 4.89 -4.05 -0.02 1.91 16 5 C -0.02 -0.26 2.81 -93.41 -0.26 -0.52 16 6 H 0.11 1.21 5.40 -51.93 -0.28 0.93 16 7 C -0.14 -2.08 7.72 37.16 0.29 -1.80 16 8 C 0.22 3.60 14.64 -20.76 -0.30 3.29 16 9 N -0.44 -8.28 18.54 42.15 0.78 -7.50 16 10 S 2.77 48.88 4.73 -107.50 -0.51 48.37 16 11 O -0.89 -18.35 10.78 -57.17 -0.62 -18.97 16 12 O -1.00 -18.23 17.06 -57.17 -0.98 -19.21 16 13 N -1.05 -18.67 5.87 31.15 0.18 -18.49 16 14 C 0.39 8.18 7.39 -155.32 -1.15 7.03 16 15 C -0.34 -6.89 9.97 -38.87 -0.39 -7.28 16 16 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 17 C -0.30 -6.66 9.83 -38.65 -0.38 -7.04 16 18 C 0.29 7.10 6.46 -85.00 -0.55 6.55 16 19 C -0.43 -10.43 9.12 -37.75 -0.34 -10.78 16 20 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 21 C 0.07 1.64 5.32 -17.35 -0.09 1.55 16 22 N -0.67 -15.89 8.76 55.55 0.49 -15.40 16 23 Si 0.87 18.36 29.58 -169.99 -5.03 13.34 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 27 N -0.52 -12.10 4.64 -10.33 -0.05 -12.15 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 30 H 0.06 0.57 5.51 -51.93 -0.29 0.28 16 31 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 32 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.15 2.91 4.53 -51.93 -0.24 2.68 16 34 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 35 H 0.06 0.87 6.15 -51.93 -0.32 0.55 16 36 H 0.09 1.58 6.72 -51.93 -0.35 1.23 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.42 6.18 8.86 -34.47 -0.31 5.88 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 42 H 0.28 6.44 7.43 -40.82 -0.30 6.14 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -29.23 352.83 -9.00 -38.23 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.05 Total: 9.86 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.25 Total: -8.24 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: 1.11 Total: -68.70 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.59 Total: -38.18 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 48.88 SS G_CDS: -0.51 Total: 48.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.23 -9.00 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434648643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds