Wall clock time and date at job start Tue Mar 31 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47025 * 2 1 4 4 C 1.46490 * 120.00180 * 274.11286 * 3 2 1 5 5 C 1.53000 * 109.47348 * 83.07605 * 4 3 2 6 6 H 1.09002 * 109.47280 * 305.59445 * 5 4 3 7 7 C 1.52999 * 109.47054 * 65.59516 * 5 4 3 8 8 C 1.47201 * 109.47295 * 185.59442 * 5 4 3 9 9 N 5.55432 * 85.11082 * 312.90230 * 2 1 3 10 10 S 1.65601 * 119.99807 * 93.83674 * 3 2 1 11 11 O 1.42102 * 106.40206 * 195.94441 * 10 3 2 12 12 O 1.42106 * 106.40334 * 328.86274 * 10 3 2 13 13 N 1.65598 * 107.21933 * 82.40063 * 10 3 2 14 14 C 1.38819 * 119.99890 * 64.01793 * 13 10 3 15 15 C 1.39799 * 119.58694 * 196.68294 * 14 13 10 16 16 C 1.38597 * 119.49051 * 179.76778 * 15 14 13 17 17 C 1.38386 * 118.68133 * 0.49979 * 16 15 14 18 18 C 1.40553 * 119.15208 * 359.75014 * 17 16 15 19 19 C 1.41315 * 119.79045 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99620 * 13.46286 * 19 18 17 21 21 C 1.40017 * 120.00489 * 193.46223 * 19 18 17 22 22 N 1.30743 * 120.00089 * 10.44156 * 21 19 18 23 23 Si 1.86799 * 120.00021 * 190.44060 * 21 19 18 24 24 H 1.48498 * 109.47345 * 90.00399 * 23 21 19 25 25 H 1.48505 * 109.47090 * 209.99903 * 23 21 19 26 26 H 1.48496 * 109.47221 * 330.00158 * 23 21 19 27 27 N 1.31957 * 119.58295 * 16.96176 * 14 13 10 28 28 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47259 * 300.00162 * 1 2 3 30 30 H 1.09000 * 109.46993 * 60.00290 * 1 2 3 31 31 H 1.08995 * 109.47579 * 240.00451 * 2 1 3 32 32 H 1.09000 * 109.46993 * 119.99710 * 2 1 3 33 33 H 1.09002 * 109.47342 * 203.07808 * 4 3 2 34 34 H 1.09004 * 109.47082 * 323.07478 * 4 3 2 35 35 H 1.09006 * 109.47002 * 299.88542 * 7 5 4 36 36 H 1.08997 * 109.47371 * 59.88447 * 7 5 4 37 37 H 1.09001 * 109.47435 * 179.88760 * 7 5 4 38 38 H 0.96999 * 120.00166 * 244.01512 * 13 10 3 39 39 H 1.07994 * 120.25024 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.65668 * 180.24787 * 16 15 14 41 41 H 1.07994 * 120.42739 * 179.76975 * 17 16 15 42 42 H 0.97002 * 120.00652 * 184.65731 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1767 2.1022 -1.2654 5 6 0.8291 2.6894 -1.6900 6 1 0.0815 1.8969 -1.7224 7 6 0.3976 3.7567 -0.6822 8 6 0.9575 3.2978 -3.0242 9 7 1.0566 3.7673 -4.0538 10 16 2.3848 2.1299 1.4310 11 8 2.4583 3.5207 1.1489 12 8 1.5104 1.5800 2.4070 13 7 3.9143 1.6570 1.8540 14 6 4.9941 2.0019 1.0526 15 6 6.2092 1.3274 1.2037 16 6 7.2845 1.6701 0.3992 17 6 7.1233 2.6843 -0.5284 18 6 5.8782 3.3286 -0.6290 19 6 5.6984 4.3656 -1.5720 20 1 6.4285 4.5175 -2.3533 21 6 4.5739 5.1962 -1.4936 22 7 3.7996 5.1505 -0.4411 23 14 4.1801 6.3696 -2.8926 24 1 3.3004 5.6891 -3.8767 25 1 3.4864 7.5671 -2.3539 26 1 5.4400 6.7855 -3.5595 27 7 4.8622 2.9662 0.1615 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8996 2.9078 -1.1366 34 1 2.5316 1.4148 -2.0332 35 1 0.3006 3.3057 0.3055 36 1 1.1462 4.5482 -0.6482 37 1 -0.5614 4.1764 -0.9857 38 1 4.0559 1.1389 2.6618 39 1 6.3080 0.5425 1.9388 40 1 8.2306 1.1587 0.4973 41 1 7.9435 2.9768 -1.1671 42 1 2.9844 5.6757 -0.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434648643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:28 Heat of formation + Delta-G solvation = -20.614937 kcal Electronic energy + Delta-G solvation = -29565.875109 eV Core-core repulsion = 25672.709831 eV Total energy + Delta-G solvation = -3893.165278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19884 -39.15651 -37.98889 -37.21457 -36.49748 -36.27173 -34.86801 -34.03848 -32.23968 -30.96885 -30.54052 -27.34632 -27.25664 -24.28176 -23.55393 -23.20373 -23.05317 -20.17550 -19.60104 -19.06734 -18.47794 -17.93641 -17.72525 -16.74845 -16.54565 -16.25509 -16.04467 -15.71679 -15.31261 -15.06534 -14.74334 -14.64329 -14.47675 -14.22775 -13.93683 -13.83111 -13.71332 -13.47506 -13.13169 -13.05907 -12.98107 -12.86831 -12.76504 -12.69697 -12.49035 -12.42193 -12.33537 -12.23535 -12.04648 -11.98759 -11.77071 -11.64549 -11.35635 -10.90066 -10.04321 -9.93101 -9.42788 -8.94235 -8.21914 -6.31915 -0.20822 1.02116 1.24937 1.41981 1.45126 1.53814 1.69677 1.75747 2.02919 2.25349 2.64166 2.91737 3.01455 3.75198 3.79961 3.94111 3.97490 4.08587 4.14302 4.19263 4.44884 4.51630 4.54492 4.73210 4.79068 4.85902 4.90355 4.91475 5.02056 5.04655 5.10473 5.25005 5.29069 5.36697 5.45400 5.54828 5.59937 5.74195 5.83556 5.98523 6.03985 6.37988 6.42701 6.54463 6.88810 7.09079 8.13177 8.53782 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.008232 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.939730 B = 3400.684136 C = 5262.117828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 N -0.984 5.984 4 C 0.118 3.882 5 C -0.010 4.010 6 H 0.150 0.850 7 C -0.142 4.142 8 C 0.237 3.763 9 N -0.481 5.481 10 S 2.777 3.223 11 O -0.924 6.924 12 O -1.008 7.008 13 N -1.042 6.042 14 C 0.374 3.626 15 C -0.336 4.336 16 C -0.032 4.032 17 C -0.319 4.319 18 C 0.267 3.733 19 C -0.459 4.459 20 H 0.079 0.921 21 C 0.050 3.950 22 N -0.679 5.679 23 Si 0.920 3.080 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.261 1.261 27 N -0.528 5.528 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.428 0.572 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -10.222 2.473 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.824 5.824 4 C -0.009 4.009 5 C -0.033 4.033 6 H 0.167 0.833 7 C -0.200 4.200 8 C -0.081 4.081 9 N -0.158 5.158 10 S 2.785 3.215 11 O -0.906 6.906 12 O -0.992 6.992 13 N -0.792 5.792 14 C 0.135 3.865 15 C -0.363 4.363 16 C -0.056 4.056 17 C -0.342 4.342 18 C 0.142 3.858 19 C -0.490 4.490 20 H 0.097 0.903 21 C -0.178 4.178 22 N -0.299 5.299 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.185 1.185 27 N -0.248 5.248 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.264 0.736 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.096 -8.244 1.361 11.634 hybrid contribution 1.159 -0.330 0.062 1.207 sum -6.937 -8.574 1.423 11.120 Atomic orbital electron populations 1.22379 0.94855 1.03674 1.02529 1.21523 0.95561 0.80429 1.04059 1.57627 1.79406 1.24055 1.21288 1.21500 0.95660 0.98204 0.85562 1.19652 1.01698 0.99039 0.82951 0.83280 1.21876 1.02560 0.98447 0.97160 1.29391 0.91845 0.92426 0.94421 1.81192 1.09825 1.10496 1.14242 1.02402 0.72222 0.74235 0.72649 1.93814 1.84920 1.28826 1.83062 1.93571 1.63638 1.81436 1.60588 1.53510 1.23397 1.68469 1.33851 1.18305 0.86588 0.90520 0.91111 1.21044 0.94702 1.09756 1.10759 1.21042 0.97697 0.94202 0.92694 1.21793 0.98624 1.06224 1.07592 1.18336 0.86816 0.91261 0.89361 1.19636 1.07125 1.10860 1.11409 0.90254 1.26284 0.96326 0.98169 0.97021 1.70078 1.07903 1.28095 1.23823 0.86120 0.79375 0.79388 0.80757 1.19599 1.20115 1.18523 1.67945 1.33368 1.13117 1.10407 0.89451 0.93122 0.91040 0.88586 0.90411 0.86848 0.89968 0.92182 0.91880 0.90113 0.73645 0.85736 0.85106 0.87855 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 10.01 71.98 0.72 -2.29 16 2 C 0.11 2.24 6.07 86.38 0.52 2.76 16 3 N -0.98 -27.77 2.58 -515.80 -1.33 -29.10 16 4 C 0.12 3.68 4.89 86.38 0.42 4.10 16 5 C -0.01 -0.28 2.81 -12.60 -0.04 -0.31 16 6 H 0.15 2.79 5.40 -2.39 -0.01 2.78 16 7 C -0.14 -4.04 7.72 71.98 0.56 -3.48 16 8 C 0.24 7.67 14.64 89.44 1.31 8.98 16 9 N -0.48 -18.19 18.54 20.01 0.37 -17.82 16 10 S 2.78 95.21 4.73 -56.49 -0.27 94.95 16 11 O -0.92 -38.12 10.78 -128.00 -1.38 -39.50 16 12 O -1.01 -35.16 17.06 -128.00 -2.18 -37.34 16 13 N -1.04 -35.59 5.87 -55.37 -0.32 -35.92 16 14 C 0.37 15.35 7.39 133.42 0.99 16.34 16 15 C -0.34 -12.71 9.97 22.73 0.23 -12.49 16 16 C -0.03 -1.24 10.15 22.39 0.23 -1.01 16 17 C -0.32 -14.27 9.83 22.87 0.22 -14.05 16 18 C 0.27 13.24 6.46 40.18 0.26 13.50 16 19 C -0.46 -23.09 9.12 23.46 0.21 -22.87 16 20 H 0.08 3.89 7.87 -2.91 -0.02 3.87 16 21 C 0.05 2.41 5.32 85.29 0.45 2.86 16 22 N -0.68 -33.25 8.76 21.83 0.19 -33.06 16 23 Si 0.92 38.95 29.58 68.60 2.03 40.98 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 27 N -0.53 -24.67 4.64 -186.58 -0.87 -25.53 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.05 7.79 -2.39 -0.02 1.03 16 30 H 0.07 1.05 5.51 -2.39 -0.01 1.04 16 31 H 0.10 1.61 8.01 -2.39 -0.02 1.59 16 32 H 0.08 1.53 7.85 -2.39 -0.02 1.51 16 33 H 0.11 4.52 4.53 -2.39 -0.01 4.51 16 34 H 0.08 2.35 8.02 -2.38 -0.02 2.33 16 35 H 0.06 1.69 6.15 -2.38 -0.01 1.68 16 36 H 0.06 2.20 6.72 -2.39 -0.02 2.18 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.43 11.86 8.86 -96.75 -0.86 11.00 16 39 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.28 13.28 7.43 -92.71 -0.69 12.59 16 Total: -1.00 -63.76 352.83 2.63 -61.14 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.30 Total: 29.17 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 6.09 Total: -7.96 kcal Atomic # 7 Polarization: -139.48 SS G_CDS: -1.96 Total: -141.44 kcal Atomic # 8 Polarization: -73.27 SS G_CDS: -3.56 Total: -76.84 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: 95.21 SS G_CDS: -0.27 Total: 94.95 kcal Total: -63.76 2.63 -61.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434648643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.522 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds