Wall clock time and date at job start Tue Mar 31 2020 20:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34225 * 125.69345 * 2 1 4 4 C 1.38684 * 107.32037 * 180.13414 * 3 2 1 5 5 C 1.46357 * 126.49960 * 179.89266 * 4 3 2 6 6 C 1.37902 * 119.99983 * 315.75849 * 5 4 3 7 7 C 1.43199 * 119.99818 * 169.46991 * 6 5 4 8 8 N 6.82067 * 140.58626 * 352.46843 * 2 1 3 9 9 C 1.46989 * 120.00315 * 349.47534 * 6 5 4 10 10 O 1.21672 * 119.99552 * 352.61932 * 9 6 5 11 11 N 1.34772 * 120.00294 * 172.89753 * 9 6 5 12 12 C 1.39850 * 120.00221 * 184.44403 * 11 9 6 13 13 C 1.38981 * 120.03779 * 145.01416 * 12 11 9 14 14 C 1.38155 * 120.05929 * 179.74850 * 13 12 11 15 15 C 1.38167 * 120.14480 * 0.55214 * 14 13 12 16 16 C 1.38915 * 120.07504 * 359.70286 * 15 14 13 17 17 O 1.35749 * 120.03418 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99946 * 5.01165 * 17 16 15 19 19 H 1.07997 * 119.99859 * 5.35435 * 18 17 16 20 20 C 1.38653 * 119.99617 * 185.34707 * 18 17 16 21 21 N 1.31562 * 119.99375 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00374 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47042 * 89.99873 * 22 20 18 24 24 H 1.48496 * 109.47144 * 209.99382 * 22 20 18 25 25 H 1.48492 * 109.47090 * 329.99683 * 22 20 18 26 26 C 1.38738 * 120.03513 * 325.29883 * 12 11 9 27 27 C 1.41674 * 107.00015 * 359.62942 * 4 3 2 28 28 N 1.30355 * 107.99351 * 0.23002 * 27 4 3 29 29 H 1.09002 * 109.47009 * 270.30382 * 1 2 3 30 30 H 1.08997 * 109.46852 * 30.30521 * 1 2 3 31 31 H 1.09000 * 109.46724 * 150.29971 * 1 2 3 32 32 H 1.08006 * 126.33545 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.00315 * 135.75920 * 5 4 3 34 34 H 0.96994 * 120.00144 * 4.44123 * 11 9 6 35 35 H 1.07999 * 119.96967 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.92716 * 180.28091 * 14 13 12 37 37 H 1.08005 * 119.96481 * 179.72525 * 15 14 13 38 38 H 0.97009 * 119.99593 * 180.02562 * 21 20 18 39 39 H 1.07996 * 120.07012 * 359.94744 * 26 12 11 40 40 H 1.08001 * 126.00617 * 180.20204 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2481 1.0901 0.0000 4 6 3.5643 0.6530 -0.0031 5 6 4.7613 1.4951 -0.0064 6 6 4.8308 2.5913 -0.8403 7 6 5.8923 3.5403 -0.6882 8 7 6.7345 4.2932 -0.5676 9 6 3.8154 2.7856 -1.8851 10 8 2.9932 1.9157 -2.1036 11 7 3.7984 3.9249 -2.6048 12 6 2.7777 4.1500 -3.5339 13 6 2.2921 5.4365 -3.7359 14 6 1.2873 5.6601 -4.6574 15 6 0.7542 4.6050 -5.3725 16 6 1.2315 3.3160 -5.1714 17 8 0.7068 2.2798 -5.8740 18 6 -0.2006 2.5819 -6.8244 19 1 -0.4153 3.6144 -7.0573 20 6 -0.8580 1.5669 -7.5028 21 7 -1.7431 1.8618 -8.4305 22 14 -0.4870 -0.2189 -7.0996 23 1 -1.4004 -0.6838 -6.0249 24 1 -0.6859 -1.0518 -8.3128 25 1 0.9199 -0.3407 -6.6406 26 6 2.2446 3.0885 -4.2507 27 6 3.5303 -0.7633 0.0038 28 7 2.2813 -1.1362 0.0055 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5092 32 1 1.9149 2.1175 -0.0004 33 1 5.5901 1.2581 0.6441 34 1 4.4942 4.5888 -2.4784 35 1 2.7037 6.2627 -3.1753 36 1 0.9147 6.6614 -4.8159 37 1 -0.0343 4.7825 -6.0889 38 1 -2.2033 1.1517 -8.9049 39 1 2.6176 2.0874 -4.0928 40 1 4.3886 -1.4190 0.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464241543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:35 Heat of formation + Delta-G solvation = 88.814791 kcal Electronic energy + Delta-G solvation = -27917.416671 eV Core-core repulsion = 23893.552671 eV Total energy + Delta-G solvation = -4023.864000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20574 -41.49869 -40.43995 -38.41708 -37.72978 -35.65342 -35.02062 -34.43965 -33.72200 -31.40153 -30.85201 -29.86699 -28.02654 -27.23437 -25.33932 -23.90055 -23.06443 -22.32231 -21.97862 -21.04175 -19.93914 -19.80957 -19.11153 -17.90667 -17.20604 -16.90259 -16.64791 -16.51161 -16.18213 -15.99147 -15.71551 -15.55919 -15.40460 -15.27597 -14.63595 -14.52227 -14.36810 -14.25558 -14.15828 -13.94552 -13.87345 -13.64560 -13.46859 -13.26489 -13.20227 -12.94866 -12.73067 -12.51696 -12.06923 -11.75989 -11.55544 -11.30142 -11.03004 -10.87457 -10.65232 -10.32483 -9.37631 -8.98054 -8.85892 -8.51608 -6.23029 -0.48801 0.44983 0.65510 1.09115 1.27515 1.30207 1.48328 1.53289 1.64954 1.66171 1.90047 2.03632 2.25468 2.57851 2.76161 2.87550 3.08184 3.15571 3.63289 3.79925 3.92393 4.12390 4.16900 4.34815 4.37109 4.38916 4.40316 4.56197 4.61579 4.66112 4.68923 4.72658 4.88267 4.95111 5.17812 5.36496 5.38837 5.44164 5.68599 5.69343 5.78555 5.90912 6.00597 6.21464 6.39783 6.45510 6.75289 6.83752 7.12361 7.60333 8.60014 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.004085 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.414319 B = 6852.540147 C = 8928.994238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.369 5.369 3 C 0.152 3.848 4 C -0.279 4.279 5 C 0.176 3.824 6 C -0.173 4.173 7 C 0.281 3.719 8 N -0.452 5.452 9 C 0.566 3.434 10 O -0.529 6.529 11 N -0.658 5.658 12 C 0.187 3.813 13 C -0.197 4.197 14 C -0.052 4.052 15 C -0.247 4.247 16 C 0.135 3.865 17 O -0.247 6.247 18 C -0.395 4.395 19 H 0.087 0.913 20 C 0.016 3.984 21 N -0.920 5.920 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.264 1.264 25 H -0.273 1.273 26 C -0.193 4.193 27 C 0.091 3.909 28 N -0.348 5.348 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.418 0.582 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.120 0.880 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.229 0.674 22.365 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.001 4.001 4 C -0.291 4.291 5 C 0.151 3.849 6 C -0.182 4.182 7 C -0.033 4.033 8 N -0.129 5.129 9 C 0.356 3.644 10 O -0.405 6.405 11 N -0.303 5.303 12 C 0.092 3.908 13 C -0.218 4.218 14 C -0.070 4.070 15 C -0.267 4.267 16 C 0.086 3.914 17 O -0.155 6.155 18 C -0.472 4.472 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.785 3.215 23 H -0.192 1.192 24 H -0.189 1.189 25 H -0.197 1.197 26 C -0.214 4.214 27 C -0.096 4.096 28 N -0.168 5.168 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.200 0.800 33 H 0.209 0.791 34 H 0.256 0.744 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 10.837 -0.129 22.283 24.778 hybrid contribution -0.052 0.198 -0.836 0.860 sum 10.785 0.069 21.447 24.006 Atomic orbital electron populations 1.22177 0.72685 1.05284 1.04960 1.48514 1.08055 1.03832 1.54157 1.23350 0.90802 0.93516 0.92393 1.19196 0.92296 0.93524 1.24087 1.22635 0.92999 0.83561 0.85666 1.17563 0.96101 1.00029 1.04467 1.25312 0.92209 0.92739 0.93009 1.81355 1.11275 1.10794 1.09433 1.18168 0.83989 0.81089 0.81144 1.90955 1.39912 1.41338 1.68339 1.43337 1.27192 1.21714 1.38102 1.17203 0.90532 0.93131 0.89908 1.20890 1.01385 0.95413 1.04103 1.20959 0.94362 0.98455 0.93273 1.21340 1.05771 0.92965 1.06624 1.19379 0.93072 0.87733 0.91256 1.83544 1.53686 1.32305 1.45925 1.20728 1.17636 0.95895 1.12909 0.89603 1.25137 0.94626 1.03362 0.95128 1.69718 1.26159 1.35608 1.24564 0.85344 0.79200 0.78560 0.78366 1.19162 1.18872 1.19742 1.20176 1.01002 1.00297 0.99968 1.24589 0.95343 0.93993 0.95641 1.77044 1.03268 1.09169 1.27307 0.87921 0.88683 0.89554 0.80014 0.79113 0.74359 0.82546 0.83048 0.87018 0.90564 0.86217 0.76379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 11.44 127.77 1.46 3.01 16 2 N -0.37 -8.42 3.98 -367.23 -1.46 -9.88 16 3 C 0.15 3.10 8.48 84.43 0.72 3.81 16 4 C -0.28 -4.80 4.71 -20.21 -0.10 -4.90 16 5 C 0.18 1.92 9.88 24.30 0.24 2.16 16 6 C -0.17 -2.70 5.86 -19.82 -0.12 -2.81 16 7 C 0.28 4.64 14.20 88.33 1.25 5.89 16 8 N -0.45 -9.36 18.54 19.00 0.35 -9.00 16 9 C 0.57 13.32 7.12 86.54 0.62 13.94 16 10 O -0.53 -16.16 9.75 -4.26 -0.04 -16.20 16 11 N -0.66 -15.62 5.29 -306.85 -1.62 -17.24 16 12 C 0.19 5.85 6.30 38.16 0.24 6.09 16 13 C -0.20 -5.45 9.96 22.43 0.22 -5.22 16 14 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 15 C -0.25 -10.57 9.14 22.41 0.20 -10.37 16 16 C 0.14 6.46 6.65 22.56 0.15 6.61 16 17 O -0.25 -13.87 8.58 -22.71 -0.19 -14.06 16 18 C -0.40 -23.50 9.91 67.92 0.67 -22.82 16 19 H 0.09 5.26 5.50 -2.91 -0.02 5.25 16 20 C 0.02 0.95 5.49 84.83 0.47 1.42 16 21 N -0.92 -55.03 13.96 21.61 0.30 -54.73 16 22 Si 0.96 46.98 28.62 68.60 1.96 48.95 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 26 C -0.19 -7.93 8.64 22.52 0.19 -7.74 16 27 C 0.09 1.67 12.04 85.76 1.03 2.70 16 28 N -0.35 -8.61 12.48 -56.06 -0.70 -9.30 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.18 3.23 7.69 -2.91 -0.02 3.21 16 33 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 34 H 0.42 7.72 7.71 -92.71 -0.72 7.01 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.11 5.23 5.69 -2.91 -0.02 5.22 16 38 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 39 H 0.12 5.30 6.19 -2.91 -0.02 5.29 16 40 H 0.22 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -79.35 360.12 6.49 -72.85 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.41 Total: 18.28 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 7.48 Total: -9.66 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.13 Total: -100.16 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.24 Total: -30.26 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.96 Total: 48.95 kcal Total: -79.35 6.49 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464241543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.669 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds