Wall clock time and date at job start Tue Mar 31 2020 21:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35656 * 116.99998 * 2 1 4 4 C 1.38647 * 120.14210 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.06838 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.81254 * 180.02562 * 5 4 3 7 7 C 1.38693 * 120.36763 * 359.97438 * 5 4 3 8 8 C 1.37728 * 120.28623 * 0.02562 * 7 5 4 9 9 C 1.39746 * 119.92364 * 359.97438 * 8 7 5 10 10 C 1.47473 * 120.18419 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00150 * 154.15075 * 10 9 8 12 12 N 1.34783 * 119.99805 * 334.16090 * 10 9 8 13 13 C 1.47423 * 125.64751 * 4.56514 * 12 10 9 14 14 C 1.54689 * 104.93947 * 204.08218 * 13 12 10 15 15 C 1.55163 * 101.67606 * 323.27685 * 14 13 12 16 16 C 1.47016 * 125.64440 * 184.88562 * 12 10 9 17 17 H 1.08998 * 109.88692 * 59.48054 * 16 12 10 18 18 C 1.53001 * 109.88349 * 298.31293 * 16 12 10 19 19 N 1.46496 * 109.47100 * 73.00681 * 18 16 12 20 20 C 1.36940 * 120.00001 * 187.39293 * 19 18 16 21 21 H 1.08001 * 120.00023 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99915 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46843 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47111 * 120.00114 * 24 22 20 27 27 H 1.48501 * 109.46740 * 240.00231 * 24 22 20 28 28 H 1.08999 * 109.47144 * 300.00061 * 1 2 3 29 29 H 1.09005 * 109.47136 * 60.00372 * 1 2 3 30 30 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.96087 * 359.70875 * 4 3 2 32 32 H 1.07996 * 119.85841 * 180.02562 * 7 5 4 33 33 H 1.08005 * 120.04327 * 179.97438 * 8 7 5 34 34 H 1.09001 * 110.36748 * 323.00910 * 13 12 10 35 35 H 1.08998 * 110.36548 * 85.33337 * 13 12 10 36 36 H 1.09005 * 111.10247 * 205.11354 * 14 13 12 37 37 H 1.08999 * 110.85341 * 81.34146 * 14 13 12 38 38 H 1.08997 * 110.71786 * 276.97373 * 15 14 13 39 39 H 1.08999 * 110.87090 * 153.77466 * 15 14 13 40 40 H 1.08999 * 109.47075 * 193.01217 * 18 16 12 41 41 H 1.09000 * 109.46927 * 313.00711 * 18 16 12 42 42 H 0.96994 * 120.00074 * 7.39367 * 19 18 16 43 43 H 0.96999 * 120.00642 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3734 -0.0005 5 6 1.9216 3.6040 0.0000 6 17 0.9732 5.0581 0.0000 7 6 3.3062 3.6837 0.0016 8 6 4.0680 2.5363 0.0022 9 6 3.4445 1.2856 0.0016 10 6 4.2546 0.0533 0.0028 11 8 3.7962 -0.9753 0.4616 12 7 5.5033 0.0672 -0.5045 13 6 6.2151 1.2582 -1.0026 14 6 7.2651 0.7086 -1.9967 15 6 7.6913 -0.6130 -1.3043 16 6 6.3784 -1.1040 -0.6588 17 1 5.9010 -1.8411 -1.3044 18 6 6.6706 -1.7195 0.7111 19 7 5.4749 -2.4095 1.2015 20 6 5.4472 -2.9092 2.4761 21 1 6.3066 -2.7944 3.1200 22 6 4.3141 -3.5626 2.9409 23 7 3.2665 -3.7021 2.1565 24 14 4.2760 -4.2437 4.6800 25 1 5.5689 -3.9575 5.3521 26 1 3.1718 -3.6030 5.4385 27 1 4.0568 -5.7117 4.6318 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2140 2.3188 -0.0057 32 1 3.7892 4.6496 0.0024 33 1 5.1460 2.6029 0.0030 34 1 5.5230 1.9280 -1.5130 35 1 6.7090 1.7763 -0.1806 36 1 8.1105 1.3902 -2.0913 37 1 6.8134 0.5123 -2.9690 38 1 8.4479 -0.4229 -0.5431 39 1 8.0550 -1.3347 -2.0357 40 1 7.4905 -2.4321 0.6219 41 1 6.9484 -0.9318 1.4114 42 1 4.7029 -2.5123 0.6233 43 1 2.4748 -4.1590 2.4811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483941836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:49 Heat of formation + Delta-G solvation = 4.187795 kcal Electronic energy + Delta-G solvation = -28081.357509 eV Core-core repulsion = 24154.931300 eV Total energy + Delta-G solvation = -3926.426208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61679 -39.32322 -37.64859 -36.80339 -36.35562 -34.17320 -32.05218 -31.10691 -30.40140 -30.29378 -28.63893 -27.20365 -25.13608 -24.04321 -22.66245 -22.39719 -21.39781 -20.92842 -19.06445 -17.82438 -17.39998 -16.48663 -16.42965 -16.21666 -15.64496 -15.37434 -14.88743 -14.38318 -14.29755 -13.80610 -13.77060 -13.46888 -13.37887 -13.26758 -12.85988 -12.82955 -12.41618 -12.34620 -11.91913 -11.82886 -11.57858 -11.40899 -11.34323 -11.17043 -11.06897 -10.94302 -10.70484 -10.65462 -10.53347 -10.39830 -9.84721 -9.45823 -9.00706 -8.74480 -8.57851 -8.26175 -8.00589 -6.47483 -5.38096 -2.64829 0.75756 1.23913 1.87023 3.13284 3.33945 3.37612 3.58940 3.63700 3.65973 3.93918 4.52923 4.61153 4.68990 4.82215 4.86935 4.91091 4.99955 5.07096 5.19610 5.25382 5.33837 5.41339 5.44665 5.48264 5.60525 5.67618 5.78794 5.85660 5.89520 5.93146 6.00083 6.05047 6.09946 6.16007 6.30011 6.43162 6.56025 6.73686 6.91416 7.09091 7.40362 7.95873 8.07290 8.72970 9.00885 9.92180 10.59253 11.00576 11.82258 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.004440 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.196651 B = 6305.379554 C = 8260.513566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.267 6.267 3 C 0.197 3.803 4 C -0.216 4.216 5 C 0.021 3.979 6 Cl -0.071 7.071 7 C -0.163 4.163 8 C -0.056 4.056 9 C -0.145 4.145 10 C 0.547 3.453 11 O -0.424 6.424 12 N -0.615 5.615 13 C 0.091 3.909 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.133 3.867 17 H 0.072 0.928 18 C 0.145 3.855 19 N -0.719 5.719 20 C -0.235 4.235 21 H 0.059 0.941 22 C -0.009 4.009 23 N -0.911 5.911 24 Si 0.892 3.108 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.401 0.599 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 18.265 -11.553 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.177 6.177 3 C 0.147 3.853 4 C -0.236 4.236 5 C -0.005 4.005 6 Cl -0.042 7.042 7 C -0.182 4.182 8 C -0.075 4.075 9 C -0.149 4.149 10 C 0.333 3.667 11 O -0.291 6.291 12 N -0.354 5.354 13 C -0.032 4.032 14 C -0.172 4.172 15 C -0.163 4.163 16 C 0.030 3.970 17 H 0.090 0.910 18 C 0.016 3.984 19 N -0.372 5.372 20 C -0.367 4.367 21 H 0.077 0.923 22 C -0.206 4.206 23 N -0.559 5.559 24 Si 0.724 3.276 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.222 1.222 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.245 0.755 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.016 17.513 -11.098 20.733 hybrid contribution -0.658 0.068 1.003 1.201 sum -0.674 17.581 -10.095 20.284 Atomic orbital electron populations 1.23186 0.78497 1.04819 1.00723 1.86485 1.20970 1.24267 1.85959 1.18881 0.90886 0.84698 0.90803 1.21026 1.00860 0.90363 1.11322 1.20770 0.91831 0.86924 1.01021 1.98369 1.72634 1.36501 1.96701 1.20822 0.91228 0.99495 1.06629 1.21750 1.01212 0.90054 0.94461 1.19573 0.90890 0.94757 1.09665 1.17632 0.80586 0.88505 0.80015 1.91022 1.68358 1.30471 1.39236 1.48297 1.14082 1.08611 1.64422 1.22568 0.94576 0.89524 0.96563 1.22750 0.98471 0.97418 0.98517 1.22631 0.96828 0.96981 0.99828 1.21865 0.89260 0.87626 0.98280 0.90967 1.20964 0.91951 0.94241 0.91242 1.43001 1.13955 1.65953 1.14295 1.19162 0.98601 1.28349 0.90566 0.92269 1.24645 0.96510 1.02192 0.97214 1.69768 1.04197 1.47341 1.34594 0.86334 0.76913 0.78427 0.85879 1.20937 1.22324 1.22242 0.92556 0.92893 0.87484 0.84006 0.84545 0.82795 0.90389 0.91604 0.90176 0.90776 0.90418 0.90240 0.96730 0.96497 0.75522 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.27 -4.91 8.89 -38.70 -0.34 -5.26 16 3 C 0.20 3.23 6.67 -38.70 -0.26 2.97 16 4 C -0.22 -2.83 8.80 -39.44 -0.35 -3.18 16 5 C 0.02 0.26 6.32 -39.42 -0.25 0.01 16 6 Cl -0.07 -0.73 28.94 -51.86 -1.50 -2.23 16 7 C -0.16 -1.80 9.80 -39.60 -0.39 -2.19 16 8 C -0.06 -0.71 7.94 -39.20 -0.31 -1.02 16 9 C -0.14 -2.41 5.74 -104.84 -0.60 -3.02 16 10 C 0.55 11.06 7.41 -12.50 -0.09 10.97 16 11 O -0.42 -11.00 11.55 -14.75 -0.17 -11.17 16 12 N -0.62 -10.30 3.07 -164.40 -0.50 -10.80 16 13 C 0.09 1.02 5.01 -2.65 -0.01 1.01 16 14 C -0.13 -1.25 7.07 -24.70 -0.17 -1.43 16 15 C -0.12 -1.47 6.46 -24.89 -0.16 -1.63 16 16 C 0.13 2.30 3.11 -66.96 -0.21 2.09 16 17 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 18 C 0.15 3.18 5.63 -4.04 -0.02 3.16 16 19 N -0.72 -20.17 4.11 -59.91 -0.25 -20.41 16 20 C -0.23 -7.20 9.99 -15.06 -0.15 -7.35 16 21 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.91 -29.81 13.06 55.49 0.72 -29.08 16 24 Si 0.89 24.06 29.55 -169.99 -5.02 19.04 16 25 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 27 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 28 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.14 1.56 6.30 -52.49 -0.33 1.23 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.15 1.59 4.40 -52.48 -0.23 1.36 16 34 H 0.08 0.76 5.99 -51.93 -0.31 0.45 16 35 H 0.07 0.67 7.37 -51.93 -0.38 0.28 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.40 12.03 4.82 -40.91 -0.20 11.83 16 43 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -37.96 358.98 -9.32 -47.28 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.58 Total: 5.92 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.08 Total: 1.30 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.03 Total: -60.30 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.51 Total: -16.42 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.96 -9.32 -47.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483941836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.471 kcal (2) G-P(sol) polarization free energy of solvation -37.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds