Wall clock time and date at job start Tue Mar 31 2020 21:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35656 * 116.99998 * 2 1 4 4 C 1.38647 * 120.14210 * 359.97438 * 3 2 1 5 5 C 1.38209 * 120.06838 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.81254 * 180.02562 * 5 4 3 7 7 C 1.38693 * 120.36763 * 359.97438 * 5 4 3 8 8 C 1.37728 * 120.28623 * 0.02562 * 7 5 4 9 9 C 1.39746 * 119.92364 * 359.97438 * 8 7 5 10 10 C 1.47473 * 120.18419 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00150 * 154.15075 * 10 9 8 12 12 N 1.34783 * 119.99805 * 334.16090 * 10 9 8 13 13 C 1.47423 * 125.64751 * 4.56514 * 12 10 9 14 14 C 1.54689 * 104.93947 * 204.08218 * 13 12 10 15 15 C 1.55163 * 101.67606 * 323.27685 * 14 13 12 16 16 C 1.47016 * 125.64440 * 184.88562 * 12 10 9 17 17 H 1.08998 * 109.88692 * 59.48054 * 16 12 10 18 18 C 1.53001 * 109.88349 * 298.31293 * 16 12 10 19 19 N 1.46496 * 109.47100 * 73.00681 * 18 16 12 20 20 C 1.36940 * 120.00001 * 187.39293 * 19 18 16 21 21 H 1.08001 * 120.00023 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99915 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46843 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47111 * 120.00114 * 24 22 20 27 27 H 1.48501 * 109.46740 * 240.00231 * 24 22 20 28 28 H 1.08999 * 109.47144 * 300.00061 * 1 2 3 29 29 H 1.09005 * 109.47136 * 60.00372 * 1 2 3 30 30 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.96087 * 359.70875 * 4 3 2 32 32 H 1.07996 * 119.85841 * 180.02562 * 7 5 4 33 33 H 1.08005 * 120.04327 * 179.97438 * 8 7 5 34 34 H 1.09001 * 110.36748 * 323.00910 * 13 12 10 35 35 H 1.08998 * 110.36548 * 85.33337 * 13 12 10 36 36 H 1.09005 * 111.10247 * 205.11354 * 14 13 12 37 37 H 1.08999 * 110.85341 * 81.34146 * 14 13 12 38 38 H 1.08997 * 110.71786 * 276.97373 * 15 14 13 39 39 H 1.08999 * 110.87090 * 153.77466 * 15 14 13 40 40 H 1.08999 * 109.47075 * 193.01217 * 18 16 12 41 41 H 1.09000 * 109.46927 * 313.00711 * 18 16 12 42 42 H 0.96994 * 120.00074 * 7.39367 * 19 18 16 43 43 H 0.96999 * 120.00642 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3734 -0.0005 5 6 1.9216 3.6040 0.0000 6 17 0.9732 5.0581 0.0000 7 6 3.3062 3.6837 0.0016 8 6 4.0680 2.5363 0.0022 9 6 3.4445 1.2856 0.0016 10 6 4.2546 0.0533 0.0028 11 8 3.7962 -0.9753 0.4616 12 7 5.5033 0.0672 -0.5045 13 6 6.2151 1.2582 -1.0026 14 6 7.2651 0.7086 -1.9967 15 6 7.6913 -0.6130 -1.3043 16 6 6.3784 -1.1040 -0.6588 17 1 5.9010 -1.8411 -1.3044 18 6 6.6706 -1.7195 0.7111 19 7 5.4749 -2.4095 1.2015 20 6 5.4472 -2.9092 2.4761 21 1 6.3066 -2.7944 3.1200 22 6 4.3141 -3.5626 2.9409 23 7 3.2665 -3.7021 2.1565 24 14 4.2760 -4.2437 4.6800 25 1 5.5689 -3.9575 5.3521 26 1 3.1718 -3.6030 5.4385 27 1 4.0568 -5.7117 4.6318 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2140 2.3188 -0.0057 32 1 3.7892 4.6496 0.0024 33 1 5.1460 2.6029 0.0030 34 1 5.5230 1.9280 -1.5130 35 1 6.7090 1.7763 -0.1806 36 1 8.1105 1.3902 -2.0913 37 1 6.8134 0.5123 -2.9690 38 1 8.4479 -0.4229 -0.5431 39 1 8.0550 -1.3347 -2.0357 40 1 7.4905 -2.4321 0.6219 41 1 6.9484 -0.9318 1.4114 42 1 4.7029 -2.5123 0.6233 43 1 2.4748 -4.1590 2.4811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483941836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:49 Heat of formation + Delta-G solvation = -21.244191 kcal Electronic energy + Delta-G solvation = -28082.460322 eV Core-core repulsion = 24154.931300 eV Total energy + Delta-G solvation = -3927.529022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79054 -40.54164 -38.69814 -38.14018 -37.36020 -36.15085 -33.56696 -32.77228 -31.55200 -31.33569 -30.21439 -28.25339 -26.75318 -25.47105 -24.26642 -23.46226 -22.81378 -21.95254 -20.38648 -19.25130 -18.90113 -18.04680 -17.58495 -17.38960 -16.77370 -16.66189 -16.36533 -16.13511 -15.41430 -15.19116 -14.99396 -14.95557 -14.72489 -14.51928 -14.27562 -14.02292 -13.68061 -13.53217 -13.16317 -13.06217 -12.91168 -12.88519 -12.76701 -12.64456 -12.35357 -12.20796 -12.11024 -11.96164 -11.85790 -11.59544 -11.55883 -11.44579 -10.86798 -10.37107 -9.98698 -9.50508 -9.26533 -8.71187 -7.74564 -5.01714 -0.31029 0.23137 0.94326 1.40830 1.44066 1.53090 1.94427 2.12471 2.29611 2.61012 2.69700 3.51089 3.55932 3.59542 3.76896 3.83356 3.93426 4.00253 4.07489 4.20308 4.28899 4.31464 4.36659 4.40300 4.47434 4.54909 4.65459 4.67894 4.84184 4.86104 4.92445 4.95532 5.05356 5.06162 5.11092 5.20655 5.22496 5.44829 5.47904 5.51638 5.68975 6.32529 6.41316 6.76457 7.42756 7.62289 8.41784 8.70905 9.46642 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.004440 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.196651 B = 6305.379554 C = 8260.513566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.315 6.315 3 C 0.171 3.829 4 C -0.214 4.214 5 C 0.022 3.978 6 Cl -0.050 7.050 7 C -0.149 4.149 8 C -0.045 4.045 9 C -0.177 4.177 10 C 0.535 3.465 11 O -0.499 6.499 12 N -0.616 5.616 13 C 0.080 3.920 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.132 3.868 17 H 0.043 0.957 18 C 0.143 3.857 19 N -0.735 5.735 20 C -0.244 4.244 21 H 0.061 0.939 22 C -0.074 4.074 23 N -0.948 5.948 24 Si 0.963 3.037 25 H -0.268 1.268 26 H -0.299 1.299 27 H -0.291 1.291 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.021 0.979 41 H 0.011 0.989 42 H 0.390 0.610 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 21.874 -12.201 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.227 6.227 3 C 0.123 3.877 4 C -0.233 4.233 5 C -0.005 4.005 6 Cl -0.021 7.021 7 C -0.167 4.167 8 C -0.063 4.063 9 C -0.181 4.181 10 C 0.323 3.677 11 O -0.372 6.372 12 N -0.352 5.352 13 C -0.041 4.041 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.028 3.972 17 H 0.062 0.938 18 C 0.015 3.985 19 N -0.386 5.386 20 C -0.377 4.377 21 H 0.079 0.921 22 C -0.267 4.267 23 N -0.598 5.598 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.227 1.227 27 H -0.218 1.218 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.196 0.804 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.232 0.768 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.828 21.191 -11.780 24.313 hybrid contribution -1.188 -0.919 1.150 1.892 sum 0.640 20.272 -10.630 22.898 Atomic orbital electron populations 1.23372 0.76677 1.05092 1.02599 1.86422 1.23294 1.26297 1.86672 1.19187 0.91290 0.85024 0.92248 1.21145 1.01544 0.89847 1.10775 1.20960 0.92613 0.87192 0.99700 1.98383 1.72257 1.34939 1.96483 1.21216 0.90800 1.00402 1.04328 1.21979 1.02449 0.88715 0.93177 1.19596 0.90990 0.94809 1.12751 1.18349 0.81462 0.88885 0.78961 1.90966 1.70189 1.33168 1.42885 1.48419 1.13295 1.10341 1.63149 1.22989 0.95236 0.87991 0.97926 1.22778 0.98965 0.96212 0.97627 1.22625 0.93574 0.98750 1.00278 1.21833 0.92148 0.87907 0.95278 0.93836 1.21167 0.89957 0.93762 0.93660 1.43266 1.15473 1.66413 1.13466 1.19573 0.98554 1.27682 0.91844 0.92081 1.25494 0.96304 1.03378 1.01517 1.69995 1.04674 1.48566 1.36548 0.85217 0.77181 0.77453 0.80823 1.19238 1.22682 1.21842 0.91515 0.89998 0.88173 0.82425 0.80827 0.80410 0.88401 0.89590 0.86160 0.90281 0.89362 0.88652 0.96111 0.97109 0.76849 0.95080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.32 -12.56 8.89 -70.56 -0.63 -13.19 16 3 C 0.17 5.82 6.67 22.84 0.15 5.97 16 4 C -0.21 -5.43 8.80 22.36 0.20 -5.23 16 5 C 0.02 0.48 6.32 22.37 0.14 0.62 16 6 Cl -0.05 -0.86 28.94 -2.72 -0.08 -0.94 16 7 C -0.15 -2.77 9.80 22.26 0.22 -2.55 16 8 C -0.05 -1.03 7.94 22.51 0.18 -0.85 16 9 C -0.18 -6.02 5.74 -20.01 -0.11 -6.14 16 10 C 0.54 22.78 7.41 86.68 0.64 23.42 16 11 O -0.50 -28.04 11.55 15.13 0.17 -27.87 16 12 N -0.62 -20.70 3.07 -792.29 -2.43 -23.13 16 13 C 0.08 1.55 5.01 86.78 0.43 1.98 16 14 C -0.12 -1.72 7.07 31.91 0.23 -1.50 16 15 C -0.11 -2.41 6.46 31.79 0.21 -2.21 16 16 C 0.13 4.65 3.11 45.34 0.14 4.79 16 17 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 18 C 0.14 6.45 5.63 86.38 0.49 6.93 16 19 N -0.73 -43.44 4.11 -343.46 -1.41 -44.85 16 20 C -0.24 -15.54 9.99 84.03 0.84 -14.70 16 21 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -4.79 5.50 84.86 0.47 -4.32 16 23 N -0.95 -65.42 13.06 21.65 0.28 -65.14 16 24 Si 0.96 51.29 29.55 68.60 2.03 53.32 16 25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 27 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 28 H 0.07 1.62 7.67 -2.39 -0.02 1.60 16 29 H 0.08 1.68 7.66 -2.38 -0.02 1.66 16 30 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 31 H 0.16 3.32 6.30 -2.91 -0.02 3.30 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.18 3.05 4.40 -2.91 -0.01 3.04 16 34 H 0.10 1.55 5.99 -2.39 -0.01 1.54 16 35 H 0.09 1.38 7.37 -2.39 -0.02 1.36 16 36 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.02 0.92 8.12 -2.39 -0.02 0.91 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.39 25.10 4.82 -94.11 -0.45 24.64 16 43 H 0.24 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -90.89 358.98 3.86 -87.03 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.60 Total: 26.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.33 Total: 7.79 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -3.56 Total: -133.12 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.45 Total: -41.06 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.03 Total: 53.32 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -90.89 3.86 -87.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483941836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.784 kcal (2) G-P(sol) polarization free energy of solvation -90.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds