Wall clock time and date at job start Tue Mar 31 2020 21:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35675 * 117.00171 * 2 1 4 4 C 1.38704 * 120.13298 * 0.23068 * 3 2 1 5 5 C 1.38056 * 120.09708 * 180.25671 * 4 3 2 6 6 C 1.38649 * 120.37576 * 359.78902 * 5 4 3 7 7 Cl 1.73600 * 119.86275 * 179.97438 * 6 5 4 8 8 C 1.37886 * 120.27424 * 359.95593 * 6 5 4 9 9 C 1.39721 * 119.89579 * 0.02562 * 8 6 5 10 10 C 1.47531 * 120.18606 * 179.97438 * 9 8 6 11 11 O 1.21590 * 120.00210 * 153.83848 * 10 9 8 12 12 N 1.34784 * 119.99857 * 333.83514 * 10 9 8 13 13 C 1.47422 * 125.65081 * 4.83964 * 12 10 9 14 14 C 1.54903 * 104.83464 * 204.17364 * 13 12 10 15 15 C 1.55164 * 101.58095 * 322.99288 * 14 13 12 16 16 C 1.47018 * 125.64535 * 184.89055 * 12 10 9 17 17 H 1.09006 * 110.01372 * 59.40836 * 16 12 10 18 18 C 1.53002 * 109.88689 * 298.31739 * 16 12 10 19 19 N 1.46495 * 109.47479 * 73.40476 * 18 16 12 20 20 C 1.36931 * 120.00238 * 187.53914 * 19 18 16 21 21 H 1.08002 * 120.00043 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00070 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99989 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47235 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.47104 * 300.00038 * 24 22 20 27 27 H 1.48495 * 109.47177 * 59.99852 * 24 22 20 28 28 H 1.09004 * 109.47174 * 299.99918 * 1 2 3 29 29 H 1.08998 * 109.47510 * 60.00212 * 1 2 3 30 30 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.95673 * 0.04184 * 4 3 2 32 32 H 1.07999 * 119.81648 * 179.76349 * 5 4 3 33 33 H 1.08006 * 120.05690 * 180.02562 * 8 6 5 34 34 H 1.08999 * 110.36291 * 85.33268 * 13 12 10 35 35 H 1.08995 * 110.45835 * 323.06231 * 13 12 10 36 36 H 1.09001 * 111.00500 * 204.92171 * 14 13 12 37 37 H 1.08997 * 111.03760 * 81.07434 * 14 13 12 38 38 H 1.09005 * 110.71390 * 277.13749 * 15 14 13 39 39 H 1.09000 * 110.72100 * 153.86580 * 15 14 13 40 40 H 1.09011 * 109.46762 * 313.40456 * 18 16 12 41 41 H 1.08996 * 109.47313 * 193.40863 * 18 16 12 42 42 H 0.97007 * 119.99742 * 7.53264 * 19 18 16 43 43 H 0.97000 * 120.00310 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2922 2.3739 0.0048 5 6 1.9198 3.6036 -0.0005 6 6 3.3039 3.6843 -0.0063 7 17 4.0791 5.2376 -0.0137 8 6 4.0672 2.5360 -0.0059 9 6 3.4440 1.2855 -0.0001 10 6 4.2545 0.0528 -0.0002 11 8 3.8007 -0.9733 0.4685 12 7 5.4980 0.0639 -0.5200 13 6 6.2070 1.2530 -1.0266 14 6 7.2449 0.6971 -2.0331 15 6 7.6780 -0.6208 -1.3380 16 6 6.3716 -1.1082 -0.6767 17 1 5.8892 -1.8508 -1.3122 18 6 6.6775 -1.7162 0.6936 19 7 5.4898 -2.4117 1.1954 20 6 5.4732 -2.9038 2.4731 21 1 6.3359 -2.7796 3.1108 22 6 4.3476 -3.5624 2.9487 23 7 3.2964 -3.7142 2.1714 24 14 4.3247 -4.2331 4.6920 25 1 3.0179 -4.8880 4.9533 26 1 5.4169 -5.2261 4.8547 27 1 4.5216 -3.1189 5.6537 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2137 2.3191 0.0093 32 1 1.3293 4.5078 -0.0006 33 1 5.1452 2.6030 -0.0100 34 1 6.7100 1.7711 -0.2101 35 1 5.5122 1.9250 -1.5303 36 1 8.0892 1.3782 -2.1399 37 1 6.7835 0.4955 -2.9998 38 1 8.4422 -0.4266 -0.5853 39 1 8.0327 -1.3450 -2.0713 40 1 6.9554 -0.9239 1.3888 41 1 7.5011 -2.4241 0.6014 42 1 4.7150 -2.5235 0.6225 43 1 3.3080 -3.3656 1.2663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483954730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:55 Heat of formation + Delta-G solvation = 0.953261 kcal Electronic energy + Delta-G solvation = -28230.583340 eV Core-core repulsion = 24304.016872 eV Total energy + Delta-G solvation = -3926.566468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70663 -39.40551 -37.72654 -36.89315 -36.23629 -34.43686 -32.31309 -31.15574 -30.60253 -30.06533 -28.44490 -27.24419 -25.09409 -24.02045 -22.67986 -22.41527 -21.60856 -20.96687 -19.16975 -17.78812 -17.45971 -16.67188 -16.53157 -16.29759 -15.73492 -15.61425 -15.13178 -14.41300 -14.10492 -13.88675 -13.77862 -13.41932 -13.39906 -13.23058 -13.14926 -12.91129 -12.61982 -12.55329 -12.01869 -11.99969 -11.73779 -11.50107 -11.35696 -11.18123 -10.94612 -10.82012 -10.69193 -10.57376 -10.51040 -10.27118 -9.78554 -9.25839 -9.07407 -8.74843 -8.56609 -8.25138 -8.08344 -6.52317 -5.71174 -2.65341 0.78109 1.07495 1.98451 3.04919 3.26487 3.27695 3.66082 3.71782 3.81619 3.88392 4.42323 4.47564 4.61112 4.72395 4.87791 4.93803 4.94907 5.02250 5.13857 5.20251 5.24176 5.34246 5.41862 5.49118 5.58234 5.61416 5.70097 5.74499 5.84127 5.91563 5.94598 5.99290 5.99763 6.08220 6.23268 6.32643 6.46342 6.56778 6.84321 7.00508 7.33483 7.94550 8.12027 8.78327 9.22726 9.78068 10.59801 10.78544 11.80513 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004611 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.799429 B = 6071.103300 C = 7640.042912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.272 6.272 3 C 0.190 3.810 4 C -0.210 4.210 5 C -0.051 4.051 6 C -0.087 4.087 7 Cl -0.074 7.074 8 C -0.057 4.057 9 C -0.141 4.141 10 C 0.558 3.442 11 O -0.444 6.444 12 N -0.613 5.613 13 C 0.090 3.910 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.131 3.869 17 H 0.072 0.928 18 C 0.151 3.849 19 N -0.730 5.730 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.043 4.043 23 N -0.942 5.942 24 Si 1.074 2.926 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.300 1.300 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.385 0.615 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 18.386 -11.461 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.141 3.859 4 C -0.229 4.229 5 C -0.070 4.070 6 C -0.113 4.113 7 Cl -0.045 7.045 8 C -0.076 4.076 9 C -0.145 4.145 10 C 0.344 3.656 11 O -0.313 6.313 12 N -0.351 5.351 13 C -0.033 4.033 14 C -0.171 4.171 15 C -0.162 4.162 16 C 0.028 3.972 17 H 0.090 0.910 18 C 0.022 3.978 19 N -0.384 5.384 20 C -0.461 4.461 21 H 0.070 0.930 22 C -0.241 4.241 23 N -0.588 5.588 24 Si 0.907 3.093 25 H -0.213 1.213 26 H -0.227 1.227 27 H -0.229 1.229 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.227 0.773 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.070 16.895 -9.893 19.608 hybrid contribution 0.674 1.364 -1.074 1.862 sum -0.396 18.259 -10.967 21.303 Atomic orbital electron populations 1.23195 0.78308 1.04901 1.00781 1.86444 1.21151 1.24744 1.85872 1.19122 0.90986 0.85272 0.90510 1.21169 1.00606 0.91201 1.09931 1.20911 0.92351 0.98000 0.95746 1.20565 0.92827 0.86463 1.11482 1.98353 1.81253 1.27561 1.97351 1.21653 1.01372 0.89313 0.95238 1.19329 0.90991 0.93866 1.10333 1.17523 0.80447 0.88187 0.79439 1.90903 1.68835 1.31234 1.40303 1.48302 1.14432 1.08883 1.63504 1.22630 0.94742 0.89365 0.96569 1.22787 0.98556 0.97381 0.98350 1.22636 0.96769 0.97075 0.99757 1.21898 0.89456 0.87546 0.98284 0.91026 1.20890 0.91717 0.94171 0.91009 1.42884 1.14175 1.67089 1.14239 1.19920 1.01523 1.33607 0.91053 0.93044 1.25495 0.92763 1.00327 1.05559 1.70667 1.30025 1.48308 1.09772 0.83339 0.75203 0.75651 0.75098 1.21313 1.22711 1.22851 0.92431 0.92822 0.87486 0.83987 0.84537 0.82771 0.91461 0.90357 0.90027 0.90677 0.90314 0.90142 0.96429 0.96673 0.77318 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.27 -4.88 8.91 -38.65 -0.34 -5.23 16 3 C 0.19 3.05 6.67 -38.70 -0.26 2.79 16 4 C -0.21 -2.51 9.03 -39.48 -0.36 -2.87 16 5 C -0.05 -0.55 9.81 -39.50 -0.39 -0.94 16 6 C -0.09 -1.02 6.31 -39.56 -0.25 -1.27 16 7 Cl -0.07 -0.76 28.94 -51.86 -1.50 -2.26 16 8 C -0.06 -0.77 7.71 -39.16 -0.30 -1.07 16 9 C -0.14 -2.37 5.74 -104.85 -0.60 -2.98 16 10 C 0.56 11.39 7.40 -12.47 -0.09 11.29 16 11 O -0.44 -11.46 11.22 -14.64 -0.16 -11.63 16 12 N -0.61 -10.50 3.06 -164.24 -0.50 -11.01 16 13 C 0.09 1.08 5.02 -2.53 -0.01 1.07 16 14 C -0.13 -1.30 7.09 -24.58 -0.17 -1.48 16 15 C -0.12 -1.51 6.46 -24.89 -0.16 -1.67 16 16 C 0.13 2.31 3.10 -66.95 -0.21 2.11 16 17 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 18 C 0.15 3.41 5.63 -4.04 -0.02 3.39 16 19 N -0.73 -20.79 4.10 -59.91 -0.25 -21.04 16 20 C -0.33 -10.36 9.99 -15.06 -0.15 -10.51 16 21 H 0.05 1.60 7.83 -52.49 -0.41 1.18 16 22 C -0.04 -1.36 5.50 -17.43 -0.10 -1.46 16 23 N -0.94 -31.89 13.70 55.49 0.76 -31.13 16 24 Si 1.07 28.38 29.92 -169.99 -5.09 23.30 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 30 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.16 1.86 4.43 -52.48 -0.23 1.62 16 34 H 0.07 0.75 7.38 -51.93 -0.38 0.37 16 35 H 0.08 0.84 5.99 -51.93 -0.31 0.53 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 42 H 0.38 11.46 3.80 -40.83 -0.16 11.31 16 43 H 0.27 9.13 6.39 -40.82 -0.26 8.87 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -39.26 356.74 -9.25 -48.51 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.46 Total: 7.42 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.08 Total: -2.32 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.01 Total: -63.17 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.51 Total: -16.86 kcal Atomic # 14 Polarization: 28.38 SS G_CDS: -5.09 Total: 23.30 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.26 -9.25 -48.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483954730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.461 kcal (2) G-P(sol) polarization free energy of solvation -39.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds