Wall clock time and date at job start Tue Mar 31 2020 21:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35676 * 116.99911 * 2 1 4 4 C 1.38702 * 120.13949 * 0.22945 * 3 2 1 5 5 C 1.38051 * 120.10067 * 180.27716 * 4 3 2 6 6 C 1.38650 * 120.37720 * 359.74543 * 5 4 3 7 7 Cl 1.73596 * 119.86292 * 180.02562 * 6 5 4 8 8 C 1.37893 * 120.26970 * 359.97438 * 6 5 4 9 9 C 1.39711 * 119.89689 * 0.02562 * 8 6 5 10 10 C 1.47540 * 120.18353 * 179.97438 * 9 8 6 11 11 O 1.21592 * 119.99850 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00121 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99995 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.90491 * 336.24925 * 13 12 10 15 15 C 1.53783 * 113.61751 * 107.49735 * 13 12 10 16 16 C 1.53778 * 87.07870 * 89.11467 * 15 13 12 17 17 H 1.09005 * 113.69741 * 270.87283 * 16 15 13 18 18 C 1.53005 * 113.61656 * 139.98028 * 16 15 13 19 19 N 1.46505 * 109.46904 * 87.50303 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53778 * 113.61520 * 204.99794 * 13 12 10 29 29 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47371 * 300.00363 * 1 2 3 31 31 H 1.09004 * 109.47173 * 60.00240 * 1 2 3 32 32 H 1.08001 * 119.94881 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.81135 * 179.76391 * 5 4 3 34 34 H 1.08008 * 120.04672 * 179.97438 * 8 6 5 35 35 H 0.96995 * 119.99863 * 359.97438 * 12 10 9 36 36 H 1.09006 * 113.61401 * 334.57145 * 15 13 12 37 37 H 1.09000 * 113.61601 * 203.66407 * 15 13 12 38 38 H 1.09003 * 109.46946 * 327.51062 * 18 16 15 39 39 H 1.08993 * 109.47679 * 207.50605 * 18 16 15 40 40 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 41 41 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 42 42 H 1.08997 * 113.61899 * 156.33389 * 28 13 12 43 43 H 1.09004 * 113.61300 * 25.42925 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3740 0.0048 5 6 1.9198 3.6036 -0.0010 6 6 3.3039 3.6844 -0.0063 7 17 4.0791 5.2376 -0.0129 8 6 4.0672 2.5360 -0.0053 9 6 3.4440 1.2856 0.0005 10 6 4.2545 0.0528 0.0010 11 8 3.7086 -1.0337 0.0056 12 7 5.6001 0.1309 -0.0036 13 6 6.4048 -1.0933 -0.0037 14 1 5.8713 -1.9518 0.4043 15 6 7.0928 -1.3782 -1.3492 16 6 8.2734 -0.5385 -0.8338 17 1 8.1870 0.5243 -1.0602 18 6 9.6423 -1.1147 -1.2017 19 7 10.0446 -0.6148 -2.5187 20 6 11.2425 -0.9984 -3.0599 21 1 11.8906 -1.6698 -2.5161 22 6 11.6211 -0.5293 -4.3103 23 7 12.7701 -0.9022 -4.8329 24 14 10.5000 0.6314 -5.2513 25 1 10.8325 2.0351 -4.8987 26 1 10.6902 0.4291 -6.7101 27 1 9.0860 0.3527 -4.8930 28 6 7.8123 -0.9052 0.5866 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2137 2.3191 0.0090 33 1 1.3292 4.5077 -0.0011 34 1 5.1452 2.6031 -0.0099 35 1 6.0355 0.9976 -0.0077 36 1 6.5816 -0.9346 -2.2036 37 1 7.3378 -2.4295 -1.5004 38 1 9.5830 -2.2028 -1.2287 39 1 10.3772 -0.8092 -0.4570 40 1 9.4624 -0.0121 -3.0073 41 1 13.0349 -0.5742 -5.7065 42 1 8.2540 -1.8272 0.9647 43 1 7.8819 -0.0797 1.2951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485703494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:11 Heat of formation + Delta-G solvation = -13.586254 kcal Electronic energy + Delta-G solvation = -26160.501004 eV Core-core repulsion = 22233.304056 eV Total energy + Delta-G solvation = -3927.196949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08918 -39.88770 -38.31028 -38.00021 -36.55045 -34.69337 -33.38923 -31.82126 -31.01611 -30.45912 -27.81476 -27.18413 -25.57520 -24.72480 -23.17529 -22.54194 -21.35854 -21.09386 -19.31848 -18.81287 -17.74982 -17.45505 -16.96521 -16.27870 -15.94434 -15.80069 -15.27562 -14.99624 -14.81364 -14.37447 -14.29859 -14.20744 -13.76356 -13.68775 -13.34145 -13.05083 -12.62890 -12.54383 -12.42782 -12.34168 -12.26625 -11.82757 -11.75485 -11.41278 -11.38946 -11.13528 -10.87938 -10.61617 -10.22328 -10.15419 -10.00484 -9.87211 -9.72179 -9.55406 -9.06852 -8.84577 -8.63371 -7.18727 -5.74074 -3.08827 0.27992 0.66359 1.69192 2.49202 2.75556 2.92754 3.33411 3.39428 3.42302 3.47112 4.09407 4.11296 4.42299 4.59684 4.61570 4.62465 4.69451 4.70494 4.71359 4.84629 5.02863 5.03876 5.07500 5.12037 5.22161 5.52793 5.56830 5.58288 5.67186 5.71806 5.85406 5.88180 5.89137 5.98185 6.14230 6.15185 6.28857 6.57378 6.71618 6.82126 6.85031 7.36939 8.02957 8.09908 8.45386 9.25047 9.97642 10.17954 11.44570 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.002688 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.493909 B =10414.286632 C =11667.924492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.275 6.275 3 C 0.191 3.809 4 C -0.209 4.209 5 C -0.043 4.043 6 C -0.083 4.083 7 Cl -0.062 7.062 8 C -0.037 4.037 9 C -0.159 4.159 10 C 0.563 3.437 11 O -0.515 6.515 12 N -0.708 5.708 13 C 0.118 3.882 14 H 0.102 0.898 15 C -0.141 4.141 16 C -0.120 4.120 17 H 0.086 0.914 18 C 0.167 3.833 19 N -0.756 5.756 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.136 4.136 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.098 0.902 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.259 9.394 14.609 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.185 6.185 3 C 0.142 3.858 4 C -0.228 4.228 5 C -0.062 4.062 6 C -0.110 4.110 7 Cl -0.033 7.033 8 C -0.057 4.057 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.390 6.390 12 N -0.360 5.360 13 C 0.013 3.987 14 H 0.120 0.880 15 C -0.180 4.180 16 C -0.139 4.139 17 H 0.104 0.896 18 C 0.040 3.960 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.175 4.175 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.285 8.387 14.590 32.912 hybrid contribution -0.596 1.713 -0.922 2.035 sum -28.880 10.101 13.667 33.510 Atomic orbital electron populations 1.23234 0.78325 1.04754 1.01333 1.86416 1.21076 1.24935 1.86109 1.19098 0.90925 0.85181 0.90619 1.21215 1.00779 0.91167 1.09600 1.21016 0.92398 0.98268 0.94500 1.20620 0.92961 0.87099 1.10319 1.98393 1.80990 1.26765 1.97180 1.21090 1.00415 0.89427 0.94725 1.19298 0.90990 0.93612 1.12408 1.17791 0.81971 0.88321 0.76907 1.90836 1.71465 1.28335 1.48412 1.45590 1.05514 1.09581 1.75284 1.21935 0.91086 0.87534 0.98165 0.87968 1.23459 0.96424 1.01440 0.96661 1.22829 0.96038 0.99790 0.95203 0.89604 1.20619 0.91462 0.96261 0.87681 1.42708 1.21753 1.57583 1.18059 1.19083 0.94084 1.23803 1.00265 0.89264 1.24678 0.96952 1.00355 0.97333 1.69702 1.21735 1.48630 1.18326 0.86537 0.80719 0.81527 0.79716 1.21128 1.21763 1.20325 1.23305 0.94331 1.02850 0.96969 0.87630 0.92380 0.92338 0.83751 0.84108 0.83812 0.76629 0.91458 0.88777 0.95364 0.95512 0.80733 0.93107 0.88400 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.28 -2.99 8.57 -40.62 -0.35 -3.34 16 3 C 0.19 1.92 6.70 -38.70 -0.26 1.66 16 4 C -0.21 -1.46 9.03 -39.48 -0.36 -1.82 16 5 C -0.04 -0.29 9.81 -39.50 -0.39 -0.68 16 6 C -0.08 -0.68 6.31 -39.56 -0.25 -0.93 16 7 Cl -0.06 -0.50 28.94 -51.86 -1.50 -2.00 16 8 C -0.04 -0.33 9.31 -39.16 -0.36 -0.69 16 9 C -0.16 -1.72 5.89 -104.85 -0.62 -2.33 16 10 C 0.56 7.36 7.76 -12.47 -0.10 7.26 16 11 O -0.51 -8.48 14.76 -16.60 -0.25 -8.73 16 12 N -0.71 -7.99 5.21 -54.06 -0.28 -8.27 16 13 C 0.12 1.44 4.32 -67.12 -0.29 1.15 16 14 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 15 C -0.14 -2.00 7.43 -25.92 -0.19 -2.19 16 16 C -0.12 -1.73 3.63 -89.80 -0.33 -2.06 16 17 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.17 3.17 6.10 -4.04 -0.02 3.14 16 19 N -0.76 -18.13 5.41 -59.90 -0.32 -18.45 16 20 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 23 N -0.94 -29.82 13.97 55.49 0.78 -29.04 16 24 Si 0.88 22.45 27.74 -169.99 -4.72 17.74 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.28 -6.64 6.51 56.52 0.37 -6.27 16 28 C -0.14 -1.54 7.39 -25.92 -0.19 -1.73 16 29 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.14 0.61 6.30 -52.49 -0.33 0.28 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.14 1.03 6.41 -52.48 -0.34 0.70 16 35 H 0.40 3.62 6.73 -40.82 -0.27 3.35 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 38 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 42 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -35.74 371.51 -9.38 -45.12 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.72 Total: 6.67 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.62 Total: -5.28 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.17 Total: -55.77 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.59 Total: -12.07 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.72 Total: 17.74 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.74 -9.38 -45.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485703494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.534 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds