Wall clock time and date at job start Tue Mar 31 2020 20:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34253 * 125.75700 * 2 1 4 4 C 1.38041 * 107.41744 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41583 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99689 * 0.02562 * 5 4 3 7 7 N 1.34768 * 120.00235 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00173 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.63793 * 323.30849 * 8 7 5 10 10 C 1.55160 * 110.72023 * 199.97687 * 8 7 5 11 11 C 1.54910 * 101.58122 * 206.13218 * 10 8 7 12 12 N 1.47425 * 104.83231 * 37.00939 * 11 10 8 13 13 C 1.34771 * 125.64767 * 156.13676 * 12 11 10 14 14 O 1.21278 * 120.00143 * 179.69193 * 13 12 11 15 15 C 1.50706 * 119.99931 * 359.69212 * 13 12 11 16 16 S 1.81003 * 109.46955 * 180.02562 * 15 13 12 17 17 C 1.76194 * 99.99790 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99728 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47031 * 59.99347 * 21 19 17 23 23 H 1.48497 * 109.47081 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46938 * 299.99681 * 21 19 17 25 25 C 1.47026 * 108.70074 * 335.87083 * 12 11 10 26 26 C 1.41287 * 107.17010 * 0.22967 * 4 3 2 27 27 N 1.30442 * 108.02408 * 359.61305 * 26 4 3 28 28 H 1.08996 * 109.47028 * 89.99543 * 1 2 3 29 29 H 1.08992 * 109.47015 * 209.99742 * 1 2 3 30 30 H 1.08998 * 109.46840 * 329.99767 * 1 2 3 31 31 H 1.08004 * 126.29229 * 359.97438 * 3 2 1 32 32 H 0.96997 * 120.00309 * 0.02562 * 7 5 4 33 33 H 1.08991 * 111.00600 * 324.20835 * 10 8 7 34 34 H 1.09002 * 111.00329 * 88.06048 * 10 8 7 35 35 H 1.09001 * 110.36852 * 278.17238 * 11 10 8 36 36 H 1.08998 * 110.36449 * 155.84885 * 11 10 8 37 37 H 1.09000 * 109.46686 * 299.99326 * 15 13 12 38 38 H 1.08989 * 109.47272 * 60.00000 * 15 13 12 39 39 H 0.97003 * 119.99609 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.87531 * 120.47707 * 25 12 11 41 41 H 1.08996 * 109.88343 * 241.48426 * 25 12 11 42 42 H 1.08000 * 125.98604 * 179.73849 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6551 0.0006 5 6 4.7639 1.5059 0.0003 6 8 4.6527 2.7169 -0.0001 7 7 5.9878 0.9416 0.0004 8 6 7.1843 1.7870 0.0007 9 1 7.0261 2.6768 -0.6088 10 6 8.4197 0.9900 -0.4950 11 6 9.5783 1.7490 0.1987 12 7 9.0456 2.1235 1.5214 13 6 9.7819 2.3816 2.6203 14 8 9.2349 2.6872 3.6587 15 6 11.2849 2.2904 2.5588 16 16 11.9805 2.6902 4.1813 17 6 13.6978 2.5102 3.8308 18 1 14.0198 2.2280 2.8393 19 6 14.6366 2.7300 4.8292 20 7 14.2440 3.0734 6.0377 21 14 16.4574 2.5399 4.4574 22 1 16.8453 3.4903 3.3845 23 1 17.2455 2.8284 5.6825 24 1 16.7286 1.1502 4.0096 25 6 7.5784 2.1749 1.4413 26 6 3.5310 -0.7574 -0.0045 27 7 2.2827 -1.1357 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9167 2.1169 -0.0004 32 1 6.0765 -0.0243 0.0003 33 1 8.3760 -0.0464 -0.1605 34 1 8.5108 1.0452 -1.5798 35 1 9.8422 2.6405 -0.3702 36 1 10.4456 1.0982 0.3094 37 1 11.5763 1.2782 2.2784 38 1 11.6617 2.9954 1.8179 39 1 14.9002 3.2273 6.7353 40 1 7.1437 1.4678 2.1478 41 1 7.2301 3.1833 1.6647 42 1 4.3918 -1.4097 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491793521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:29 Heat of formation + Delta-G solvation = 15.662719 kcal Electronic energy + Delta-G solvation = -25421.951641 eV Core-core repulsion = 21530.359480 eV Total energy + Delta-G solvation = -3891.592161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80819 -40.18657 -39.04170 -37.17049 -34.47514 -33.81176 -32.41393 -31.24480 -30.56240 -29.67924 -28.23507 -27.16255 -25.47067 -23.92623 -22.95538 -21.70589 -21.07007 -20.47667 -19.30998 -18.40190 -17.67403 -16.97931 -16.56411 -16.16395 -16.12739 -15.60771 -15.14010 -15.02218 -14.79248 -14.71872 -14.23953 -13.95892 -13.81211 -13.52746 -13.41769 -13.20724 -13.12547 -12.83580 -12.54535 -12.46067 -12.12268 -11.84575 -11.76007 -11.52843 -11.10492 -11.02647 -11.02308 -10.75881 -10.16117 -10.09567 -9.81582 -9.54181 -9.33160 -9.08909 -9.04413 -8.49257 -8.21554 -6.48546 -6.19765 -3.90566 1.10103 1.73639 1.83898 2.71396 3.06852 3.11405 3.15843 3.24640 3.28241 3.31154 3.64500 3.93120 4.17044 4.22206 4.27738 4.37899 4.47972 4.55267 4.69207 4.75823 4.82840 4.98448 4.99280 5.10297 5.13549 5.15212 5.25849 5.45830 5.48358 5.61856 5.70352 5.77072 5.86781 5.90320 5.94949 6.14659 6.20894 6.29219 6.43675 7.02435 7.24314 7.60551 7.67438 8.00228 8.36509 8.58529 9.25139 10.87585 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031892 B = 0.001784 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.760458 B =15693.075369 C =15956.239841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.131 3.869 4 C -0.295 4.295 5 C 0.598 3.402 6 O -0.544 6.544 7 N -0.718 5.718 8 C 0.138 3.862 9 H 0.107 0.893 10 C -0.138 4.138 11 C 0.102 3.898 12 N -0.626 5.626 13 C 0.548 3.452 14 O -0.514 6.514 15 C -0.146 4.146 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.099 3.901 26 C 0.083 3.917 27 N -0.298 5.298 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.190 0.810 32 H 0.401 0.599 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.754 -8.404 -19.013 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.021 4.021 4 C -0.310 4.310 5 C 0.386 3.614 6 O -0.422 6.422 7 N -0.369 5.369 8 C 0.033 3.967 9 H 0.125 0.875 10 C -0.177 4.177 11 C -0.021 4.021 12 N -0.364 5.364 13 C 0.336 3.664 14 O -0.387 6.387 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.025 4.025 26 C -0.105 4.105 27 N -0.117 5.117 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.207 0.793 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.528 -8.016 -17.184 32.608 hybrid contribution 2.352 -0.295 -1.431 2.769 sum -24.175 -8.312 -18.616 31.624 Atomic orbital electron populations 1.22031 0.73256 1.05212 1.04030 1.48454 1.07377 1.03837 1.54608 1.23017 0.90090 0.93845 0.95130 1.20219 0.93438 0.93509 1.23863 1.17232 0.82148 0.86935 0.75117 1.90806 1.86767 1.14108 1.50521 1.45673 1.04882 1.10075 1.76270 1.21949 0.83787 0.94856 0.96127 0.87538 1.23083 0.93425 0.99829 1.01335 1.22269 0.96960 0.99256 0.83649 1.48452 1.06239 1.71292 1.10453 1.20049 0.88808 0.75864 0.81652 1.90717 1.73083 1.45867 1.29066 1.23506 0.93063 1.04960 1.08145 1.85431 1.03035 1.90231 1.04683 1.22821 0.91223 1.54683 0.99700 0.90963 1.24990 0.99579 0.94546 0.94432 1.70011 1.34811 1.43660 1.01771 0.86224 0.82636 0.78759 0.77872 1.19936 1.20818 1.19950 1.22246 0.81194 1.02645 0.96455 1.24079 0.95420 0.93844 0.97179 1.77206 1.01948 1.07856 1.24719 0.90077 0.88720 0.88841 0.79325 0.76389 0.89787 0.88975 0.90875 0.89729 0.89276 0.89218 0.92131 0.91242 0.90863 0.79271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.24 11.44 59.85 0.68 0.93 16 2 N -0.36 -2.50 3.98 -67.60 -0.27 -2.76 16 3 C 0.13 0.97 11.30 -16.57 -0.19 0.78 16 4 C -0.30 -2.55 6.13 -105.07 -0.64 -3.20 16 5 C 0.60 6.19 7.81 -12.52 -0.10 6.09 16 6 O -0.54 -7.62 16.62 5.27 0.09 -7.53 16 7 N -0.72 -5.76 5.12 -53.10 -0.27 -6.03 16 8 C 0.14 1.28 3.24 -66.10 -0.21 1.06 16 9 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 10 C -0.14 -0.95 6.69 -24.58 -0.16 -1.12 16 11 C 0.10 1.02 6.69 -2.53 -0.02 1.00 16 12 N -0.63 -9.17 3.33 -170.52 -0.57 -9.74 16 13 C 0.55 10.85 7.87 -10.98 -0.09 10.76 16 14 O -0.51 -12.38 16.19 5.56 0.09 -12.29 16 15 C -0.15 -3.01 5.16 36.01 0.19 -2.83 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.10 1.31 6.62 -3.07 -0.02 1.29 16 26 C 0.08 0.61 11.50 -16.98 -0.20 0.42 16 27 N -0.30 -2.60 12.50 30.86 0.39 -2.21 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.19 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.40 2.08 7.47 -40.82 -0.30 1.77 16 33 H 0.08 0.50 8.00 -51.93 -0.42 0.08 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.80 7.49 -51.93 -0.39 0.41 16 37 H 0.09 1.68 7.86 -51.92 -0.41 1.27 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.19 0.75 7.50 -52.49 -0.39 0.36 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -40.11 377.04 -7.58 -47.69 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.65 Total: -1.93 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.56 Total: 2.17 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.01 Total: -46.31 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.11 -7.58 -47.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491793521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.349 kcal (2) G-P(sol) polarization free energy of solvation -40.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds