Wall clock time and date at job start Tue Mar 31 2020 20:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35036 * 124.88083 * 2 1 4 4 C 1.35366 * 107.22871 * 179.76295 * 3 2 1 5 5 C 1.41495 * 105.50166 * 0.35965 * 4 3 2 6 6 C 1.47710 * 126.51820 * 179.90600 * 5 4 3 7 7 O 1.21571 * 120.00013 * 359.70491 * 6 5 4 8 8 N 1.34782 * 120.00166 * 179.71011 * 6 5 4 9 9 C 1.47419 * 125.64589 * 0.03722 * 8 6 5 10 10 C 1.55123 * 104.94292 * 203.96846 * 9 8 6 11 11 C 1.55162 * 101.48511 * 323.22290 * 10 9 8 12 12 H 1.08997 * 110.72023 * 276.82961 * 11 10 9 13 13 N 1.46499 * 110.72027 * 153.73303 * 11 10 9 14 14 C 1.34773 * 119.99849 * 157.44351 * 13 11 10 15 15 O 1.21283 * 120.00144 * 359.97438 * 14 13 11 16 16 C 1.50705 * 119.99721 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46942 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00017 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00153 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00093 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 90.00077 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00257 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00251 * 22 20 18 26 26 C 1.47019 * 125.64621 * 179.97438 * 8 6 5 27 27 N 1.28461 * 124.89208 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47045 * 269.96952 * 1 2 3 29 29 H 1.09002 * 109.47572 * 29.97612 * 1 2 3 30 30 H 1.09003 * 109.46886 * 149.97467 * 1 2 3 31 31 H 1.08001 * 126.38811 * 0.03287 * 3 2 1 32 32 H 1.08000 * 127.24698 * 180.24247 * 4 3 2 33 33 H 1.09004 * 110.36963 * 322.93498 * 9 8 6 34 34 H 1.09007 * 110.36487 * 85.14733 * 9 8 6 35 35 H 1.08999 * 111.16282 * 205.13670 * 10 9 8 36 36 H 1.09000 * 110.93718 * 81.21315 * 10 9 8 37 37 H 0.97000 * 119.99965 * 337.44139 * 13 11 10 38 38 H 1.08997 * 109.46935 * 60.00104 * 16 14 13 39 39 H 1.09000 * 109.47082 * 299.99666 * 16 14 13 40 40 H 0.97006 * 119.99745 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.87934 * 59.56381 * 26 8 6 42 42 H 1.08996 * 110.01449 * 298.46920 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.1078 0.0000 4 6 3.5271 0.6973 0.0053 5 6 3.4741 -0.7167 0.0000 6 6 4.6273 -1.6396 0.0008 7 8 5.7598 -1.1973 0.0011 8 7 4.4243 -2.9720 0.0010 9 6 3.1105 -3.6408 -0.0002 10 6 3.3747 -5.0425 0.6095 11 6 4.7747 -5.3734 0.0282 12 1 4.6876 -5.7813 -0.9788 13 7 5.4920 -6.3048 0.9024 14 6 6.4872 -7.0653 0.4048 15 8 6.7887 -6.9789 -0.7668 16 6 7.2255 -8.0229 1.3042 17 16 8.4940 -8.8916 0.3490 18 6 9.1795 -9.9141 1.6095 19 1 8.7885 -9.8672 2.6152 20 6 10.2229 -10.7793 1.3104 21 7 10.7354 -11.5428 2.2522 22 14 10.8997 -10.8601 -0.4288 23 1 12.0023 -9.8763 -0.5771 24 1 9.8188 -10.5416 -1.3960 25 1 11.4163 -12.2265 -0.6960 26 6 5.4762 -3.9990 0.0013 27 7 2.1998 -1.0537 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.8904 2.1306 0.0005 32 1 4.4107 1.3183 0.0105 33 1 2.4018 -3.0860 0.6147 34 1 2.7344 -3.7362 -1.0189 35 1 2.6311 -5.7647 0.2724 36 1 3.4050 -4.9944 1.6980 37 1 5.2507 -6.3741 1.8393 38 1 6.5234 -8.7463 1.7190 39 1 7.6979 -7.4688 2.1153 40 1 11.4643 -12.1477 2.0430 41 1 6.1042 -3.8862 0.8852 42 1 6.0843 -3.9105 -0.8990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493221193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:47 Heat of formation + Delta-G solvation = 24.970421 kcal Electronic energy + Delta-G solvation = -25703.409336 eV Core-core repulsion = 21812.220788 eV Total energy + Delta-G solvation = -3891.188548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.04485 -40.29293 -39.12355 -37.41481 -34.29926 -33.83510 -32.42405 -31.47117 -30.90691 -29.64359 -28.63014 -27.38136 -25.60104 -24.45899 -22.53499 -21.80777 -21.41720 -20.46931 -19.62100 -18.04549 -17.68469 -17.13010 -16.96239 -16.66002 -16.22433 -15.68814 -15.36836 -15.02912 -14.92947 -14.46802 -14.30703 -13.87632 -13.63309 -13.60460 -13.41185 -13.26617 -13.20190 -12.95775 -12.78642 -12.60467 -12.29554 -12.21341 -11.70468 -11.34977 -11.24911 -10.99114 -10.95134 -10.59086 -10.36128 -9.84594 -9.68621 -9.56967 -9.48672 -9.12516 -8.98242 -8.83280 -8.49083 -6.90544 -6.27525 -3.99287 1.22154 1.74825 1.97614 2.57587 2.82971 2.93091 3.16614 3.32198 3.36245 3.52220 3.65280 3.84324 4.15452 4.24425 4.34484 4.34772 4.46501 4.53033 4.73624 4.74749 4.76019 4.85464 4.97237 5.09245 5.11667 5.25838 5.30020 5.34199 5.45713 5.48941 5.63337 5.75636 5.79374 5.81355 5.92261 6.01874 6.11541 6.30961 6.49035 7.20672 7.44318 7.54710 7.95451 7.95806 8.42863 8.44111 9.18684 10.81630 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.001892 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.921329 B =14795.905281 C =15152.533575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.287 5.287 3 C -0.019 4.019 4 C -0.177 4.177 5 C -0.011 4.011 6 C 0.616 3.384 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.141 4.141 11 C 0.138 3.862 12 H 0.107 0.893 13 N -0.728 5.728 14 C 0.532 3.468 15 O -0.515 6.515 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C 0.096 3.904 27 N -0.260 5.260 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.076 0.924 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.868 24.822 -2.376 36.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.075 5.075 3 C -0.161 4.161 4 C -0.205 4.205 5 C -0.170 4.170 6 C 0.403 3.597 7 O -0.403 6.403 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.179 4.179 11 C 0.032 3.968 12 H 0.125 0.875 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.200 1.200 26 C -0.028 4.028 27 N -0.097 5.097 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.200 0.800 32 H 0.181 0.819 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.435 24.212 -4.287 36.103 hybrid contribution 0.394 0.426 1.299 1.423 sum -26.041 24.638 -2.988 35.974 Atomic orbital electron populations 1.22194 0.73106 1.05575 1.04546 1.45488 1.07869 1.03243 1.50946 1.22881 0.90928 0.93798 1.08500 1.21806 0.97473 0.93433 1.07822 1.21834 0.90531 0.94081 1.10601 1.16515 0.86669 0.79825 0.76706 1.90833 1.22674 1.76209 1.50583 1.48173 1.08679 1.04512 1.72663 1.22482 0.85461 0.92004 1.01816 1.23167 0.96557 0.96660 1.01539 1.21863 0.90357 0.88172 0.96430 0.87478 1.45927 1.37153 1.41807 1.13311 1.20358 0.79052 0.80084 0.88652 1.90713 1.64493 1.66660 1.17011 1.23282 1.01936 1.00255 1.02031 1.84805 1.40128 1.49297 1.17221 1.22316 1.22186 1.25542 0.96882 0.89369 1.24714 0.95033 0.93840 0.97726 1.69942 1.25140 1.23714 1.32876 0.86734 0.81577 0.78331 0.85203 1.19182 1.15922 1.19958 1.22460 0.90494 0.86191 1.03651 1.73579 1.02968 1.13745 1.19395 0.89617 0.88554 0.88438 0.79999 0.81910 0.88526 0.90985 0.88809 0.89883 0.76294 0.88340 0.88374 0.91951 0.90543 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.12 11.31 59.84 0.68 0.79 16 2 N -0.29 -1.78 3.70 -68.13 -0.25 -2.03 16 3 C -0.02 -0.11 11.46 -17.17 -0.20 -0.31 16 4 C -0.18 -1.62 10.81 -39.37 -0.43 -2.04 16 5 C -0.01 -0.12 6.97 -82.77 -0.58 -0.70 16 6 C 0.62 8.45 7.86 -12.39 -0.10 8.35 16 7 O -0.53 -9.04 17.25 5.30 0.09 -8.95 16 8 N -0.61 -7.17 3.33 -171.54 -0.57 -7.74 16 9 C 0.11 0.89 6.16 -2.42 -0.01 0.88 16 10 C -0.14 -1.04 6.73 -24.46 -0.16 -1.20 16 11 C 0.14 1.51 3.27 -66.09 -0.22 1.30 16 12 H 0.11 1.31 7.62 -51.93 -0.40 0.92 16 13 N -0.73 -8.82 5.12 -52.03 -0.27 -9.08 16 14 C 0.53 9.19 7.85 -10.98 -0.09 9.10 16 15 O -0.51 -10.88 15.55 5.56 0.09 -10.79 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 19 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 22 Si 0.86 21.94 27.74 -169.99 -4.71 17.23 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.10 1.22 6.63 -3.06 -0.02 1.20 16 27 N -0.26 -2.37 9.09 33.42 0.30 -2.06 16 28 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.10 -0.10 8.13 -51.93 -0.42 -0.52 16 30 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.10 0.78 6.20 -51.93 -0.32 0.46 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 37 H 0.40 3.71 8.54 -40.82 -0.35 3.36 16 38 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.08 1.04 8.03 -51.93 -0.42 0.63 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -38.88 371.92 -7.32 -46.21 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.70 Total: -0.12 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.68 Total: 3.18 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.01 Total: -46.80 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.88 -7.32 -46.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.177 kcal (2) G-P(sol) polarization free energy of solvation -38.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds