Wall clock time and date at job start Tue Mar 31 2020 20:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35036 * 124.88083 * 2 1 4 4 C 1.35366 * 107.22871 * 179.76295 * 3 2 1 5 5 C 1.41495 * 105.50166 * 0.35965 * 4 3 2 6 6 C 1.47710 * 126.51820 * 179.90600 * 5 4 3 7 7 O 1.21571 * 120.00013 * 359.70491 * 6 5 4 8 8 N 1.34782 * 120.00166 * 179.71011 * 6 5 4 9 9 C 1.47419 * 125.64589 * 0.03722 * 8 6 5 10 10 C 1.55123 * 104.94292 * 203.96846 * 9 8 6 11 11 C 1.55162 * 101.48511 * 323.22290 * 10 9 8 12 12 H 1.08997 * 110.72023 * 276.82961 * 11 10 9 13 13 N 1.46499 * 110.72027 * 153.73303 * 11 10 9 14 14 C 1.34773 * 119.99849 * 157.44351 * 13 11 10 15 15 O 1.21283 * 120.00144 * 359.97438 * 14 13 11 16 16 C 1.50705 * 119.99721 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46942 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00017 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00153 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00093 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 90.00077 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00257 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00251 * 22 20 18 26 26 C 1.47019 * 125.64621 * 179.97438 * 8 6 5 27 27 N 1.28461 * 124.89208 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47045 * 269.96952 * 1 2 3 29 29 H 1.09002 * 109.47572 * 29.97612 * 1 2 3 30 30 H 1.09003 * 109.46886 * 149.97467 * 1 2 3 31 31 H 1.08001 * 126.38811 * 0.03287 * 3 2 1 32 32 H 1.08000 * 127.24698 * 180.24247 * 4 3 2 33 33 H 1.09004 * 110.36963 * 322.93498 * 9 8 6 34 34 H 1.09007 * 110.36487 * 85.14733 * 9 8 6 35 35 H 1.08999 * 111.16282 * 205.13670 * 10 9 8 36 36 H 1.09000 * 110.93718 * 81.21315 * 10 9 8 37 37 H 0.97000 * 119.99965 * 337.44139 * 13 11 10 38 38 H 1.08997 * 109.46935 * 60.00104 * 16 14 13 39 39 H 1.09000 * 109.47082 * 299.99666 * 16 14 13 40 40 H 0.97006 * 119.99745 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.87934 * 59.56381 * 26 8 6 42 42 H 1.08996 * 110.01449 * 298.46920 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.1078 0.0000 4 6 3.5271 0.6973 0.0053 5 6 3.4741 -0.7167 0.0000 6 6 4.6273 -1.6396 0.0008 7 8 5.7598 -1.1973 0.0011 8 7 4.4243 -2.9720 0.0010 9 6 3.1105 -3.6408 -0.0002 10 6 3.3747 -5.0425 0.6095 11 6 4.7747 -5.3734 0.0282 12 1 4.6876 -5.7813 -0.9788 13 7 5.4920 -6.3048 0.9024 14 6 6.4872 -7.0653 0.4048 15 8 6.7887 -6.9789 -0.7668 16 6 7.2255 -8.0229 1.3042 17 16 8.4940 -8.8916 0.3490 18 6 9.1795 -9.9141 1.6095 19 1 8.7885 -9.8672 2.6152 20 6 10.2229 -10.7793 1.3104 21 7 10.7354 -11.5428 2.2522 22 14 10.8997 -10.8601 -0.4288 23 1 12.0023 -9.8763 -0.5771 24 1 9.8188 -10.5416 -1.3960 25 1 11.4163 -12.2265 -0.6960 26 6 5.4762 -3.9990 0.0013 27 7 2.1998 -1.0537 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.8904 2.1306 0.0005 32 1 4.4107 1.3183 0.0105 33 1 2.4018 -3.0860 0.6147 34 1 2.7344 -3.7362 -1.0189 35 1 2.6311 -5.7647 0.2724 36 1 3.4050 -4.9944 1.6980 37 1 5.2507 -6.3741 1.8393 38 1 6.5234 -8.7463 1.7190 39 1 7.6979 -7.4688 2.1153 40 1 11.4643 -12.1477 2.0430 41 1 6.1042 -3.8862 0.8852 42 1 6.0843 -3.9105 -0.8990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493221193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:45 Heat of formation + Delta-G solvation = -4.708487 kcal Electronic energy + Delta-G solvation = -25704.696310 eV Core-core repulsion = 21812.220788 eV Total energy + Delta-G solvation = -3892.475522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.61457 -41.34124 -40.36664 -38.49727 -35.43943 -34.66779 -34.36153 -32.39895 -31.64749 -30.76730 -29.57248 -28.05728 -27.79995 -25.28434 -23.24017 -22.51294 -22.24955 -21.67658 -20.45358 -19.89377 -18.55225 -18.12905 -17.84991 -17.52604 -17.18617 -17.07017 -16.77808 -16.37325 -16.34265 -15.70031 -15.27393 -14.94932 -14.78868 -14.73451 -14.52868 -14.13918 -14.00919 -13.77367 -13.56197 -13.42841 -13.34837 -13.31022 -13.05217 -13.01355 -12.72629 -12.60031 -12.07705 -11.86717 -11.66430 -11.41045 -11.17125 -11.04953 -10.53094 -10.29179 -10.25905 -10.10981 -9.76128 -8.99250 -8.51403 -6.21909 0.46051 0.97788 1.18237 1.31662 1.41829 1.47471 1.54046 1.57816 1.87120 2.23409 2.25667 2.29978 2.71921 2.86930 3.19805 3.40360 3.51627 3.85525 3.92253 4.00451 4.01824 4.12979 4.24719 4.27859 4.45130 4.47957 4.48428 4.58405 4.71005 4.72599 4.75278 4.78142 4.81204 4.93408 5.02199 5.14594 5.35095 5.41883 5.71007 5.89900 6.11833 6.29110 6.42139 6.76840 6.93972 7.03224 7.15015 8.60851 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.001892 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.921329 B =14795.905281 C =15152.533575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.278 5.278 3 C 0.005 3.995 4 C -0.208 4.208 5 C -0.046 4.046 6 C 0.607 3.393 7 O -0.580 6.580 8 N -0.605 5.605 9 C 0.106 3.894 10 C -0.122 4.122 11 C 0.141 3.859 12 H 0.097 0.903 13 N -0.701 5.701 14 C 0.538 3.462 15 O -0.558 6.558 16 C -0.111 4.111 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.064 0.936 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.236 1.236 25 H -0.258 1.258 26 C 0.097 3.903 27 N -0.264 5.264 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.421 0.579 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.277 0.723 41 H 0.064 0.936 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.607 26.189 -2.428 40.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.067 5.067 3 C -0.138 4.138 4 C -0.237 4.237 5 C -0.204 4.204 6 C 0.396 3.604 7 O -0.459 6.459 8 N -0.338 5.338 9 C -0.016 4.016 10 C -0.160 4.160 11 C 0.035 3.965 12 H 0.116 0.884 13 N -0.355 5.355 14 C 0.324 3.676 15 O -0.436 6.436 16 C -0.262 4.262 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.160 1.160 25 H -0.183 1.183 26 C -0.028 4.028 27 N -0.102 5.102 28 H 0.120 0.880 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.244 0.756 32 H 0.175 0.825 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.259 0.741 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -30.252 25.566 -4.294 39.840 hybrid contribution 1.340 0.156 1.401 1.945 sum -28.912 25.723 -2.893 38.806 Atomic orbital electron populations 1.22671 0.70023 1.07463 1.06227 1.46030 1.09499 1.02672 1.48502 1.23445 0.89493 0.95406 1.05500 1.21994 0.99176 0.92792 1.09704 1.21580 0.90651 0.94431 1.13699 1.17027 0.86962 0.80560 0.75858 1.90780 1.24776 1.77213 1.53129 1.48269 1.09751 1.04040 1.71734 1.22680 0.83917 0.92273 1.02702 1.23189 0.94219 0.96251 1.02362 1.21908 0.92028 0.86371 0.96225 0.88446 1.45644 1.35259 1.40220 1.14412 1.20024 0.79706 0.80256 0.87640 1.90709 1.66054 1.68169 1.18633 1.23273 1.00561 1.00724 1.01657 1.84748 1.42749 1.49687 1.17920 1.22463 1.22280 1.26058 0.96780 0.91818 1.25552 0.95439 0.93642 1.01343 1.70017 1.25991 1.24622 1.34788 0.85881 0.80802 0.79026 0.80743 1.18963 1.16011 1.18262 1.22321 0.90930 0.87830 1.01691 1.73485 1.02154 1.15017 1.19552 0.87964 0.85421 0.87958 0.75566 0.82526 0.87506 0.90228 0.85980 0.88197 0.74094 0.86223 0.86928 0.91391 0.91804 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.11 11.31 127.77 1.44 1.34 16 2 N -0.28 -2.60 3.70 -369.45 -1.37 -3.96 16 3 C 0.00 0.04 11.46 83.54 0.96 1.00 16 4 C -0.21 -3.75 10.81 22.41 0.24 -3.51 16 5 C -0.05 -1.04 6.97 42.46 0.30 -0.74 16 6 C 0.61 17.53 7.86 86.75 0.68 18.22 16 7 O -0.58 -21.52 17.25 -3.94 -0.07 -21.59 16 8 N -0.61 -14.51 3.33 -814.90 -2.71 -17.22 16 9 C 0.11 1.60 6.16 86.93 0.54 2.14 16 10 C -0.12 -1.42 6.73 32.06 0.22 -1.20 16 11 C 0.14 2.91 3.27 46.18 0.15 3.06 16 12 H 0.10 2.31 7.62 -2.39 -0.02 2.29 16 13 N -0.70 -15.72 5.12 -436.90 -2.24 -17.96 16 14 C 0.54 18.06 7.85 87.66 0.69 18.75 16 15 O -0.56 -23.64 15.55 -3.04 -0.05 -23.69 16 16 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 17 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 18 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.70 5.50 84.86 0.47 3.17 16 21 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 22 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 23 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.10 2.54 6.63 86.73 0.57 3.11 16 27 N -0.26 -4.35 9.09 -48.18 -0.44 -4.79 16 28 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.13 -0.92 8.13 -2.39 -0.02 -0.94 16 30 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.23 -0.22 8.06 -2.91 -0.02 -0.24 16 32 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.11 1.46 6.20 -2.39 -0.01 1.45 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.91 8.00 -2.39 -0.02 0.89 16 37 H 0.42 6.50 8.54 -92.71 -0.79 5.71 16 38 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 39 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 40 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 41 H 0.06 1.81 8.03 -2.38 -0.02 1.79 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -89.55 371.92 1.89 -87.66 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.22 Total: 8.52 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.37 Total: 11.44 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -6.45 Total: -99.76 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.12 Total: -45.27 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -89.55 1.89 -87.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.955 kcal (2) G-P(sol) polarization free energy of solvation -89.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds